mRNA_Ecto-sp13_S_contig7547.18736.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7547.18736.1
Unique NamemRNA_Ecto-sp13_S_contig7547.18736.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7547.18736.1 vs. uniprot
Match: D8LHA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA7_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 9.330e-125
Identity = 203/226 (89.82%), Postives = 211/226 (93.36%), Query Frame = 3 
Query: 3315 IVQDRRFKKGLDQAVKDGHKQQAETFQADVEAGRAPTVADPDDSLFVTYPLMRLTFYLYEPPAKAMFKVVGPLFLVLYLMLMNFNEFYGLRNIWDDGCPGEERDSDYLANGIGIAITAAFVVPAIRADRMKSPYISFTRDDLMAVAFLLGLALSTSPYCRWVISGCFVSFLVVVSAVVASVRHYFKCLHLKKTAAQHPAVMVE-ASKEVKAAGSEFKMSEWFHASV 3989
            IVQDRRFKK L+QAVKDGHKQQAET+QADVEAG  PTVADPDD+LFVTYPLMRLTFYLYEPPAKAMFK+VGPLFLV+YLMLMNFNEFYGLRNIWDDGCPGEERDSDYLANGIGIAITAAFVVPAIRADRMKSPYISFTRDDLMAVAFL+GLALSTSPYC W ISGCFVSFLVVVSAVVASVRHYFKC HL+KT  Q P V VE +SKEVKA  SEF MSEWFHASV
Sbjct:  203 IVQDRRFKKNLEQAVKDGHKQQAETYQADVEAGLPPTVADPDDNLFVTYPLMRLTFYLYEPPAKAMFKIVGPLFLVMYLMLMNFNEFYGLRNIWDDGCPGEERDSDYLANGIGIAITAAFVVPAIRADRMKSPYISFTRDDLMAVAFLIGLALSTSPYCHWAISGCFVSFLVVVSAVVASVRHYFKCKHLRKTVKQRPPVTVEVSSKEVKATSSEFNMSEWFHASV 428
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7547.18736.1 vs. uniprot
Match: A0A6H5JJB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJB2_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 4.080e-109
Identity = 181/207 (87.44%), Postives = 190/207 (91.79%), Query Frame = 3 
Query: 3327 RRFKKGLDQAVKDGHKQQAETFQADVEAGRAPTVADPDDSLFVTYPLMRLTFYLYEPPAKAMFKVVGPLFLVLYLMLMNFNEFYGLRNIWDDGCPGEERDSDYLANGIGIAITAAFVVPAIRADRMKSPYISFTRDDLMAVAFLLGLALSTSPYCRWVISGCFVSFLVVVSAVVASVRHYFKCLHLKKTAAQHPAVMVEASK-EVKA 3944
            +RFKKGL+QAV DGHKQQAET+QADVEA RAPTVADPDD +FVTYPLMRLTFYLYEPPAKAM+K+VGPLFLVLYLMLMNFNEFYGLRNIWDDGCP  +RDSDYLANGIGIAITAAFVVPAIRADRMKSPYISFTRDDL AV FLLGLALSTS YC W ISGCFVSFLVVVSAVVASVRHYFKC H++KT  Q P VMVEAS  EVKA
Sbjct:  125 QRFKKGLEQAVMDGHKQQAETYQADVEASRAPTVADPDDDVFVTYPLMRLTFYLYEPPAKAMYKIVGPLFLVLYLMLMNFNEFYGLRNIWDDGCPRGKRDSDYLANGIGIAITAAFVVPAIRADRMKSPYISFTRDDLTAVTFLLGLALSTSSYCHWAISGCFVSFLVVVSAVVASVRHYFKCKHMRKTVEQRPPVMVEASSTEVKA 331
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7547.18736.1 vs. uniprot
Match: D8LHA5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA5_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 1.090e-54
Identity = 124/235 (52.77%), Postives = 149/235 (63.40%), Query Frame = 3 
Query: 3312 EIVQDRRFKKGLDQAVKDGHKQQAETFQADVEAGRAPTVADPDDSLFVTYPLMRLTFYLYEPPAKAMFKVVGPLFLVLYLMLMNFNEFYGLRNIWDDGCPGEERDSDYLANGIGIAITAAFVVP--AIRADRMKSPYIS-FTRDDLMAVAFLLGLALSTSPYCRWVISGCFVSFLVVVSAVVASVRHYFKCLHLKKTAAQHPAVMVEASKEVKAAGSEFKMSEWFHASV*ARGSC 4007
            ++VQD R KKGL Q VKDGH QQ ET+QADVEAGRAP VA+PD++LFV+ P MRL FYLYEP    +FK+  PL LVL LMLMNF+E YG  +     CP EERD  YLAN IGI ITAAFV+P  A R + +KSP I  F+ ++LM   FL GLAL+T   C  V  G  ++  V VS V  ++   + C  LKK  A     +VEASK V    S F +  W  ASV   GSC
Sbjct:   34 QLVQDTRLKKGLTQDVKDGHNQQLETYQADVEAGRAPRVANPDENLFVSCPRMRLIFYLYEPVLNVLFKIGVPLILVLVLMLMNFHENYGPLDDTLGTCPSEERDPGYLANAIGIVITAAFVIPELACRKELVKSPNIRCFSVNELMPALFLAGLALATVRKCLVVSLGILLNCWVPVSMVFGALLQLYTCRKLKKETATSVPQVVEASKNV----SNFDIDRWRRASV--EGSC 262
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7547.18736.1 vs. uniprot
Match: D7FKB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB9_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.300e-34
Identity = 88/195 (45.13%), Postives = 118/195 (60.51%), Query Frame = 3 
Query: 3414 RAPTVADPDDSLFVTYPLMRLTFYLYEPPAKAMFKVVGPLFLVLYLMLMNFNEFYGLRN-IWDDGC---PGEERDSDYLANGIGIAITAAFVVPAIRADRMKSPYISFTRDDLMAVAFLLGLALSTSPYCRWVISGCFVSFLVVVSAVVASVRHYFKCLHLKKTAAQHPA----VMVEASKEVKAAGSEFKMSEW 3974
            RA   A  D++L + YP + L F+LYEP +KA+FK++GPL LVL LMLMNF EF+G    +  + C   P  +   DYLANGIGI + A F +P+IR   +KSP ISF RDD MAVAFL+GLALS +  CR  + G  +S +VVV A+++ V   F+   L+K A + P     V  +  K+ K    EF    W
Sbjct:  255 RADDEAGLDNNLLIRYPQLTLRFWLYEPISKAVFKILGPLALVLALMLMNFQEFFGFSAAVQSNDCLEQPASDTYRDYLANGIGIVLAAFFAIPSIREGNIKSPGISFKRDDFMAVAFLIGLALSNARQCRVALVGILLSCVVVVWALISFVWFMFELRGLRKRAEREPLRVNKVTKDKKKKAKPRAVEFDKKWW 449
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7547.18736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LHA7_ECTSI9.330e-12589.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJB2_9PHAE4.080e-10987.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHA5_ECTSI1.090e-5452.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKB9_ECTSI2.300e-3445.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7547contigEcto-sp13_S_contig7547:951..7428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size4676
Hectar predicted targeting categoryother localisation
Exons6
Cds size783
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7547.18736.1prot_Ecto-sp13_S_contig7547.18736.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7547 1635..4056 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.2479024-UTR-Ecto-sp13_S_contig7547:950..16341681464023.2479024-UTR-Ecto-sp13_S_contig7547:950..1634Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7547 951..1634 -
1681464023.3225944-UTR-Ecto-sp13_S_contig7547:4056..45231681464023.3225944-UTR-Ecto-sp13_S_contig7547:4056..4523Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7547 4057..4523 -
1681464023.3344746-UTR-Ecto-sp13_S_contig7547:4686..74281681464023.3344746-UTR-Ecto-sp13_S_contig7547:4686..7428Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7547 4687..7428 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464023.2661815-CDS-Ecto-sp13_S_contig7547:1634..16791681464023.2661815-CDS-Ecto-sp13_S_contig7547:1634..1679Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7547 1635..1679 -
1681464023.2777045-CDS-Ecto-sp13_S_contig7547:2108..23341681464023.2777045-CDS-Ecto-sp13_S_contig7547:2108..2334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7547 2109..2334 -
1681464023.2882068-CDS-Ecto-sp13_S_contig7547:2613..27771681464023.2882068-CDS-Ecto-sp13_S_contig7547:2613..2777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7547 2614..2777 -
1681464023.2998142-CDS-Ecto-sp13_S_contig7547:3158..34011681464023.2998142-CDS-Ecto-sp13_S_contig7547:3158..3401Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7547 3159..3401 -
1681464023.310744-CDS-Ecto-sp13_S_contig7547:3951..40561681464023.310744-CDS-Ecto-sp13_S_contig7547:3951..4056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7547 3952..4056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7547.18736.1

>prot_Ecto-sp13_S_contig7547.18736.1 ID=prot_Ecto-sp13_S_contig7547.18736.1|Name=mRNA_Ecto-sp13_S_contig7547.18736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp
MAPRFEFKTNQSATRWHFSVLLHTVISEYSATSSEIVQDRRFKKGLDQAV
KDGHKQQAETFQADVEAGRAPTVADPDDSLFVTYPLMRLTFYLYEPPAKA
MFKVVGPLFLVLYLMLMNFNEFYGLRNIWDDGCPGEERDSDYLANGIGIA
ITAAFVVPAIRADRMKSPYISFTRDDLMAVAFLLGLALSTSPYCRWVISG
CFVSFLVVVSAVVASVRHYFKCLHLKKTAAQHPAVMVEASKEVKAAGSEF
KMSEWFHASV*
back to top

mRNA from alignment at Ecto-sp13_S_contig7547:951..7428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7547.18736.1 ID=mRNA_Ecto-sp13_S_contig7547.18736.1|Name=mRNA_Ecto-sp13_S_contig7547.18736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6478bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7547:951..7428- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGATTAAAAACTGCTGCTGTTGTTATGGGTGTCCTGTTGAACACAACCA
ACTACGACACAGCAGTATACGATGTCACATATGTACATCATGAGCGTTTC
AGTCGCACAAAACATACCGGTTTCAGCTCCTTCGTTAATAGCTGAAGAAA
TGCCCACCACGCCAGCAACCACTTGTTTGTGCTTTTTTGCCCGTGTCGCA
ACAACATTGGTTTACCGATGACCCCTCGCCACTCAAGCAACCACGATGAC
AAAGGTACCCGCCGCGAGCTGTATGTATCGTCCGTTCTGTGTGGTGGTTG
ACACCAGGAGACTGAACGGCGCTCGGCAGTGGTTAGTGCAAAGTCGTGGA
CCAGCGGGAAACATTACCCGCCTCGTGTTAGGCAGCTTTATTTGCTCTAA
TGCCCGTGTCGCAACTTTCGTTCAACGATGATCCCTCGCCACCCACTGAA
GCAAAAGCAGCAGAACAAAGGTATTCGCCGTGAGCTGTATGATTCGTCTT
GCTCGGTGGTTAATACGGACCAGGAGGCTTCGTATGCCCAGAAGTTGTGT
TCGCATAAATTGAAAGCCCTCGAAAAATGACCCACCGCTGCTCCGTCCAG
GTTCTCTCGGCTCGTTTGCCACTTGTTTGCGGCACACATCGGGTTGTCCA
CCTGGCCCAGCCGCATGTCAAAAACAACTGCTACCGCCTTTGCGACCGAC
TCTGTACGAGCCGACACAACTCGTGGTACCACCGTCAGAGTTTGCGGGAA
TCAACTGTCGAGAGATTCAAATTTGTAGGTACGAGTCTGTGGTTGTGACC
AAAAAAGGACATCATTTTTAGCAGCGACAATCGATCCAACAGTTCCTAAC
GAAATGACGGCGTGTCCAAAGGGTGGTATTTTTTTCCGGTCCTTCTTAGC
AAACAAAGACCTCGTAAGAAGGGGGTTCTTTCGCCAGTGTCATTTTTTGT
GATGGACAAAAGAAAGAGATTATCAACAACAGGAACCGCAAGAAATGGCG
TTAATGCAGGGAACGAACGATGAAAGCAAAAAGATTGTCGCCGGCAAAGC
CCAAATCATCCTCTACGGCAGCCCCGTCCACCCAGCAAGCCCCGCTCTGA
CTAGAAGAGCGACCCTGCCTGGCCTTCCCCTGGGAAGGACTGCCACATTG
CTCTTACCCTCGTAGAAAGGAAAGATAATCGAGGTTACTTTGCACCGCCG
TGCCAAGAAGACACGTGAAAGGACACCGGATTATCAAGAATCGTGCACGG
TTCTTGGGCTCTTGAACATTAACAACCCGAACGTGTGTGTCAGCTCTGCT
TGACAACTGTTGGAGAGACTCTTATCGTTTGGTGTTCCGATCGGCGTATA
GGTCTCGACTTACTAAATGTCCTCTCCTCCTTTGCTCATTGCCAGCTCTA
GCTCAGGACGGAGACCCGATCATGGGCCTCTACCCCTTCACAGAATATTT
TTGTCGTATACTCTATGCCCCATCTACTGAAACGGCAACGGGGAATTCAT
CAACCACCACTTCACCACTTGTTTGACTCGACCTCCCCCTCCCCCGCCCT
AAACACCGACTCCAACCCCCCAGCCCAAATATGAACGATGCACGGCTCTG
CCACTATCCCATGGCATGCGCCTTACGAGTACAAATCGATATTTTCAGAG
GACGAGGATTGGCGTTGTTGCAATAAATCTAGACAGACCATTGGGTCATG
TTTAGGGTGACGATGGGGTGATGACATGATCATGTCCCGGTTATGGTCCA
CTCTCCGTCAAGACCCAGTTATGATTGGGTCTCGACTCGGCAGTGACACA
ATCATGGCTGGATCACGGCCAGGTCATGATCTAGTAGCCTGGCCGAATGT
TCCTGCGACGTGAGAAACATCAATCTATGTCATGACCCGATGGGTCATCA
TCACCCGGTCATGGTCACAGAGGTACCCACCCAATACTAATGTCACTCAT
GGCAGCTTGGAGCGACATCTCCACTGTGGTTAATTTGCTCAACAAGACAG
TGTGGTGGCCATCTTGTGTATCGGGCTGCAGCCAAGTTGAGCTCGGAGGT
CCGTCTTTTCGTCCCTACTTGGCCATTTCTCGCGTTTCCTTTGGTGCTGA
GTTTATTTCACTGTACCTCATGACCCATCCGTCAGTTGTCAGTGCATGCA
GCCGCTTTCTCTTCCCCAAACAGCCGCTTTTGTTCCACACACACCATAAT
CCGAGGGGCTAGCGGGAAACAAGCGACATATATCTCCGCTGTGCTTCTGT
GCACATCGAACAAGGCCGTACAGCGGCGGTTGGTGGCGCGAACAACGGAG
GGGGACCGCGCCATTATCGGGCGTGTCGCAGGCGATTTGCACCGAAAAGC
CCCAAAGCTACTCCACCTGCATTTTCTTCGGGGAAATCACCGCGGCGTTT
GACAGACTGTCGTGCGCTTCGAACTTTTCCAGAATATATCGGTTGATCTT
TCGTTGCTTGGATGGTGGTTTAAAGGAGACGGTAATGCAATTATTCGGTG
TTTTGTCGCTGTCGTGGAGACGAAATATTATGTCGTCGGTAAAATATTGT
GATGGTTCGCGGTTAAAAGCTAGCTTAGGAGGTAGACCTCGAAACTCAGA
ACTACCCCGGCAATTCACACAAAACCATTTTCTACATGTAGGCATTTGTT
ACTGGCAAACGCATGTTACAGAAGGAGAACATTTTTGCCAGTGAGGTGTT
TTATGGCGCGGGAGATGTCAACGCCAAGGTCAGGCAGTCAAAGCGAAAGT
ATCGATCGATTTGACTTCACAAATAATCAACTTCTGTTATCGGGCTTGAT
CCATCGCTCCAGTCGTGTCTTTCTACTCTCATGATGTGACGTGCAAACGC
CAGGTTTCCGTTTCGTATCTTGAAAGCGACGATCGACCTAGAGCTACAGG
CGAAGAACGTCGACGTCGGGCGAACGAAAGTGCTCTTCTGCCCCGACCTC
TGCGCGAGCAACATCAAGGACAACGTTGCGAAGGTGCAGACGCGCGGTTC
CCTCAGCCGATCGAGCAAGCTGACGTTTCTGCGAGAGGAACCCCTCGTCC
ATGTACGTACGTGCAAGACACCGCACCTTGGATATGTATGCATGCACACC
TCGATAAGAGAATCACTGCTTCTAGACCTCAACCTTGTGTCGAGAAGACC
CGAAGGCACCTCCACATGGGCATTAACATCGCATCTCGCATTCCGTGCGG
TGATCAAATGTTCAAGTAGTTAAACAGTACCATTTGTCGTCTTGGGTGTT
TTTGTCGGGTCTCATGGGTAGTGGCGGTAAAAACGCTCCCGGGGCGTCAC
GAGTCTAACGTGATCCATTGTGTCCAAGCTGCTCTAATTTGACCCGTCGA
TGGACCTCGCCTGACCAAAAGAATGGCCCCAAGGTTCGAATTCAAGACCA
ACCAATCAGCCACAAGGTGGCACTTCTCGGTGCTACTCCACACCGTGATT
AGCGAATATTCGGCGACGTCAAGCGAGGTACCATCGCTGTTGACCTAAAC
GCGCCGTACGTGAATATGGAAACCTTGAGACGTCATGAGCGGAATCGATC
TAGATGAAGATCATTGGAAATGCTAAATCTTGGCAAACACCAGAACGGCT
AGTTCTAGAAAGAAACATGATTTTTTTTTGTCGTCGCCGGAAGCACATAA
ACTAGACGACATCGGTGTTGGATGCTGAACGCAAGCTTCCCAATGCCCCA
TTCTAATACCCAAGGTTGGCCCCTGCGTGTCTGCCGTCGAGGCACGGATC
CTTGCACGGACGGGCGCAACATTTTTTCACTCGTGCCGAACCCGTGGCTA
ACCCTAACCCTACCTTTTGGAGTGCCACGATCGGTTAGAATCCGGCCATG
AATTTCCCGAGGTTTGGCAGAGTCAGTAGGATCCGCATCGTTTGGTGGAT
GAGAGCCGGGCCCTGTTGATGTTGGTTTCACTCGACTCATGAAAAATTTC
ACTCTTGGGTTTATGGGTGGTGGGCGTTGGAAGTATCAACGTCGACGTTG
ACGCTTTCGTTGCAAAAATGAACCCAGATCGTGCAAGACAGAAGGTTCAA
GAAGGGTTTAGACCAGGCAGTGAAGGACGGACACAAGCAGCAGGCGGAGA
CCTTCCAAGCAGACGTCGAGGCAGGCCGGGCACCAACGGTGGCCGACCCT
GACGACAGCTTGTTCGTCACGTACCCCCTGATGAGGCTCACTTTCTACTT
GTACGAGCCGCCCGCCAAGGCCATGTTTAAAGTCGTCGGTCCGCTGTTTC
TGGTACTGTACCTGATGCTGGTGAGCTACTACATCAGTCTATAGTAGGAC
TGTGTGATTCTTTGCGTTTTAGCTTGCAAAAGGTTTTAAACGTGAAATGT
ACACATTCGGCCTGCAGCTTCCGGAAAGCTGTAAACAAGCTAAAGACCCA
CGATGGGGCGGCAAGTACTTCGCTGCCGGTGAACGAGCGCAGAGGGCCAC
GGTTACAATAGCGAAGGTGATTTCTACCTCTGAACTACGGCATACCGAAC
TATAAAAATCGTGCCCGGGAAATGCGCCGCTTCGAGGTAATGGCACGTGC
ATATCATCAAAATGATTTCCTCCGTTGCAGCCCAGCGAAAGGAGAAACAT
GACCAAAGGGTGCGGCAAATTCCTTGGCTTTGATTCAAAAATTGCCATCA
GATGAACTTCAACGAGTTCTATGGATTGCGTAACATCTGGGACGACGGTT
GTCCCGGGGAAGAACGAGACTCGGACTATCTCGCCAATGGGATCGGCATT
GCTATTACGGCGGCTTTTGTGGTTCCTGCGATTCGTGCGGACAGAATGAA
GTCGCCGTACATCAGGTGGGGTCTTTCGATTAAATACCGTCGTTTGTACG
CTACCCACCCTTGGCCAACAACGCTCGTAGTCACGAAAGGTTGGTGCGGT
CTCTAAGGACTGGGAATGGGACGTGGCTGTTACCGAATGACAAAACTTCC
TCTCCCCCATCGCTACACCCCTGAGCAACCTACAACACCGCCAGATGCCT
TTCTCTTTGTCTTTTTCACGTTCGTGACTACTTCCTTCGACACCTTGATA
ATTTGACGCGCTGCAATCGACGCGCCTCGGACTCCCGAACGCAGCTTTAC
TCGGGATGACTTGATGGCGGTGGCATTTCTGCTAGGGCTGGCGCTGTCTA
CATCACCGTACTGCCGCTGGGTGATATCAGGATGCTTTGTGAGCTTTCTG
GTGGTTGTTAGCGCGGTCGTCGCGAGCGTGCGCCACTACTTCAAGTGCTT
GCACTTGAAGAAAACTGCGGCGCAGCACCCAGCCGTGATGGTGGAGGCTA
GCAAGGAGGTCAAGGCCGCGGTGAGCGTCCGCCGCACCTGTTCCACACAG
ATATCGTTTCATACGGGAACAACTTGAAACCTTTTGCGGATACCCTTGCC
GGCCCTTGTATGGATGGAACTGACAGCACGTATGCACGTTTAGGCAGCAC
CCTGACCGACATGTGCAAAAAAGCGCAAAGATGCCTAGGGAAACCATCTC
AACATCATCGCACAAGTTTCAGCGGCATCGAAACCCTGCCGAAGACGCGT
TGTGCCGTTTTATTCATGCACAGATCCTGAGTTTCACTCGGCAAGCAACT
TGTGATTTACTATTTTGCCCGGTGTTGGCACGCTGTCATTGTGAACAGGG
CGGAAAGCAAGTGCCTATTATTTGAAAATGAAAATGTTTTGACTTTTGGC
GTGTTGACGCCTGGCTGTTGCTGGCTTGCAATTCTTTTTGTTTCCGCAGG
GCTCGGAATTCAAGATGAGCGAGTGGTTTCATGCGAGCGTCTAGGCAAGG
GGTTCATGCTGAAGAAGCTCGAAGCATCGGACAACCTATTCCGATATGTA
CCATACGGAGCTTGAAGACCATGATGGCATTTCTGCGAAGAGCAGGTCCT
GTAAAATCGTTGCACTGTCTTGTACACAATAGAGGTTGCATGTGTTCATT
CAGCAAAAAAAATCATTTCGCCGCAGATACCCCTCTTTATGAGGGACTGC
ACCTCTCCCAAGGCGTTCACTAGATCCAACCTGGGATGCCGCAAGACTGC
AGGCATTTTTGCTGTCGTTGCAGGTCTGGCTTGGTGTAGGAGACATAGAT
TGACGACCATTGATGACTGCAAGAGGAAAGACACGCCGCATCTGGGAGAC
AGAACTCTTCGTCAGCGAATGACTTAACCCTTGAAAAGCATAGTGCGAAA
AGTCTTGTTTATTGTTTTTGTACGAAAAGCGGTTGACATACATATGTTTG
TTTCCCTTGGTGAAGAGATCGTTGGGTTGCAGCAGAGGGCTGGCCCAGCA
ATACCAGCTGTGATATTAAAGAGATGAATGCGAGACCTCCACTGATAATC
TCGGAAGCTTTTGTATGTCATGCGGATGGGATCGACCGCGAGGGCTGTGT
GCATTCAATCCGTGTGATGAACATGACGCGAGAGGCTATGGTTGCTGCGC
CGGTGACTCTCTCAGCCCTTGATCGGAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7547:951..7428-

>mRNA_Ecto-sp13_S_contig7547.18736.1 ID=mRNA_Ecto-sp13_S_contig7547.18736.1|Name=mRNA_Ecto-sp13_S_contig7547.18736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7547:951..7428- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCCAAGGTTCGAATTCAAGACCAACCAATCAGCCACAAGGTGGCA
CTTCTCGGTGCTACTCCACACCGTGATTAGCGAATATTCGGCGACGTCAA
GCGAGATCGTGCAAGACAGAAGGTTCAAGAAGGGTTTAGACCAGGCAGTG
AAGGACGGACACAAGCAGCAGGCGGAGACCTTCCAAGCAGACGTCGAGGC
AGGCCGGGCACCAACGGTGGCCGACCCTGACGACAGCTTGTTCGTCACGT
ACCCCCTGATGAGGCTCACTTTCTACTTGTACGAGCCGCCCGCCAAGGCC
ATGTTTAAAGTCGTCGGTCCGCTGTTTCTGGTACTGTACCTGATGCTGAT
GAACTTCAACGAGTTCTATGGATTGCGTAACATCTGGGACGACGGTTGTC
CCGGGGAAGAACGAGACTCGGACTATCTCGCCAATGGGATCGGCATTGCT
ATTACGGCGGCTTTTGTGGTTCCTGCGATTCGTGCGGACAGAATGAAGTC
GCCGTACATCAGCTTTACTCGGGATGACTTGATGGCGGTGGCATTTCTGC
TAGGGCTGGCGCTGTCTACATCACCGTACTGCCGCTGGGTGATATCAGGA
TGCTTTGTGAGCTTTCTGGTGGTTGTTAGCGCGGTCGTCGCGAGCGTGCG
CCACTACTTCAAGTGCTTGCACTTGAAGAAAACTGCGGCGCAGCACCCAG
CCGTGATGGTGGAGGCTAGCAAGGAGGTCAAGGCCGCGGGCTCGGAATTC
AAGATGAGCGAGTGGTTTCATGCGAGCGTCTAG
back to top