mRNA_Ecto-sp13_S_contig12223.1874.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12223.1874.1
Unique NamemRNA_Ecto-sp13_S_contig12223.1874.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12223.1874.1 vs. uniprot
Match: A0A6H5KV68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV68_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.980e-38
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1
Query:    1 LVDQVLVACFHPRHAFQGLEQDDVLNYEKRSPHPTINLLRADMMDEYIAMGRTLGIAEHNERRLHQ 198
            LVDQVLVACFHPRHAF GLEQDDVLNYEKRSPHPTINLLRADM+DEYIAMGRTLGIAEHNERRLHQ
Sbjct:  174 LVDQVLVACFHPRHAFHGLEQDDVLNYEKRSPHPTINLLRADMVDEYIAMGRTLGIAEHNERRLHQ 239          
BLAST of mRNA_Ecto-sp13_S_contig12223.1874.1 vs. uniprot
Match: A0A835YZ09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ09_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 8.900e-23
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   16 LVACFHPRHAFQGLEQDDVLNYEKRSPHPTINLLRADMMDEYIAMGRTLGIAEHNERRLHQ 198
            +VACFHP H F GL  DD L+YEKRSP+P INLLRA  +DEYIA G+T GIA++NERRL Q
Sbjct:    1 MVACFHPGHTFAGLPPDDPLHYEKRSPYPVINLLRAPSVDEYIAQGKTQGIADNNERRLRQ 61          
BLAST of mRNA_Ecto-sp13_S_contig12223.1874.1 vs. uniprot
Match: D7G223_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G223_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.200e-19
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 LVDQVLVACFHPRHAFQGLEQDDVLNYEKRSPHPTINLLR 120
            LVDQVLVACFHPRHAF GLEQDDVLNYEKRSPHPTINLLR
Sbjct:  174 LVDQVLVACFHPRHAFHGLEQDDVLNYEKRSPHPTINLLR 213          
BLAST of mRNA_Ecto-sp13_S_contig12223.1874.1 vs. uniprot
Match: A0A2V3IJ06_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ06_9FLOR)

HSP 1 Score: 82.8 bits (203), Expect = 4.870e-18
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 LVDQVLVACFHPRHAFQGLEQDDVLNYEKRSPHPTINLLRADMMDEYIAMGRTLGIAEHNER 186
            LVD VL+A FHP H ++G+  D  LN+EKR+P+PTIN+LR  ++D+YI+ GRT+ I  HN++
Sbjct:  120 LVDAVLIAAFHPMHRYEGMGADSALNFEKRAPYPTINILRTPLLDDYISQGRTMNIPHHNKQ 181          
BLAST of mRNA_Ecto-sp13_S_contig12223.1874.1 vs. uniprot
Match: R7Q3Y7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3Y7_CHOCR)

HSP 1 Score: 73.9 bits (180), Expect = 7.840e-14
Identity = 31/65 (47.69%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 LVDQVLVACFHPRHAFQGL-EQDDVLNYEKRSPHPTINLLRADMMDEYIAMGRTLGIAEHNERRL 192
            +VD+V++ACFHPRH + G+ ++D  LN++KR+P+P IN LRA ++D+Y++ G+T  I E N+  L
Sbjct:  215 MVDEVMLACFHPRHEWAGVGDEDAALNFDKRAPYPVINFLRARVVDQYVSEGKTQRILEQNQETL 279          
BLAST of mRNA_Ecto-sp13_S_contig12223.1874.1 vs. uniprot
Match: A0A7J7IRP6_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IRP6_9RHOD)

HSP 1 Score: 55.1 bits (131), Expect = 2.660e-7
Identity = 30/69 (43.48%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   13 VLVACFHPRH-------AFQGLEQDDVLNYEKRSPHPTINLLRADMMDEYIAMGRTLGIAEHNERRLHQ 198
            +++  FHP H       A Q L   D L+YE+R+P PTINLLR D +DE +A G++  + E N  RL Q
Sbjct:  174 LVLVFFHPLHVYAKQNAALQRLVPVDSLDYERRAPLPTINLLRGDQVDEVVATGKSAEMLEQNAVRLSQ 242          
BLAST of mRNA_Ecto-sp13_S_contig12223.1874.1 vs. uniprot
Match: A0A4D9D0E5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0E5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.850e-7
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   13 VLVACFHPRHAFQG-LEQDDVLNYEKRSPHPTINLLRADMMDEYIAMGRTLGIAEHNERRL 192
            VL+A FHP++ F G L + D +++EKRSP P  NLLRA+ +  Y   G T  IA+ NE  L
Sbjct:   90 VLLAAFHPQYTFGGGLSELDPIHFEKRSPFPVFNLLRAERVWAYANEGLTEKIADRNEAAL 150          
BLAST of mRNA_Ecto-sp13_S_contig12223.1874.1 vs. uniprot
Match: W7TR03_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TR03_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 8.650e-7
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   13 VLVACFHPRHAFQG-LEQDDVLNYEKRSPHPTINLLRADMMDEYIAMGRTLGIAEHNERRL 192
            VL+A FHP++ F G L + D +++EKRSP P  NLLRA+ +  Y   G T  IA+ NE  L
Sbjct:  302 VLLAAFHPQYTFGGGLSELDPIHFEKRSPFPVFNLLRAERVWAYANEGLTEKIADRNEAAL 362          
BLAST of mRNA_Ecto-sp13_S_contig12223.1874.1 vs. uniprot
Match: M1VCX1_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VCX1_CYAM1)

HSP 1 Score: 53.1 bits (126), Expect = 1.290e-6
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 1
Query:    1 LVDQVLVACFHPRHAF-------QGLEQDDVLNYEKRSPHPTINLLRADMMDEYIAMGRTLGIAEHNERRL 192
            L D  ++  FHP H +        G    D L+YE+R+P PTINLLR D +D  +A G++  + EHN   L
Sbjct:  163 LSDSFVLVFFHPMHMYAKHGAPANGCIPVDQLDYERRAPLPTINLLRDDQVDAAVASGKSTEMLEHNAAHL 233          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12223.1874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KV68_9PHAE2.980e-3896.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZ09_9STRA8.900e-2368.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G223_ECTSI4.200e-1997.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2V3IJ06_9FLOR4.870e-1853.23Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q3Y7_CHOCR7.840e-1447.69Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7J7IRP6_9RHOD2.660e-743.48Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A0A4D9D0E5_9STRA3.850e-747.54Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TR03_9STRA8.650e-747.54Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
M1VCX1_CYAM11.290e-639.44Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12223contigEcto-sp13_S_contig12223:1203..1757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score85.9
Seed ortholog evalue7.8e-15
Seed eggNOG ortholog2880.D7G223
Model size198
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Protein of unknown function (DUF1415)
EggNOG OGs2S8QH@2759,COG3310@1
Cds size198
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462650.3135917-CDS-Ecto-sp13_S_contig12223:1202..13211681462650.3135917-CDS-Ecto-sp13_S_contig12223:1202..1321Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12223 1203..1321 +
1681462650.3326097-CDS-Ecto-sp13_S_contig12223:1678..17571681462650.3326097-CDS-Ecto-sp13_S_contig12223:1678..1757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12223 1679..1757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12223.1874.1prot_Ecto-sp13_S_contig12223.1874.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12223 1203..1757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12223.1874.1

>prot_Ecto-sp13_S_contig12223.1874.1 ID=prot_Ecto-sp13_S_contig12223.1874.1|Name=mRNA_Ecto-sp13_S_contig12223.1874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
LVDQVLVACFHPRHAFQGLEQDDVLNYEKRSPHPTINLLRADMMDEYIAM
GRTLGIAEHNERRLHQ
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mRNA from alignment at Ecto-sp13_S_contig12223:1203..1757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12223.1874.1 ID=mRNA_Ecto-sp13_S_contig12223.1874.1|Name=mRNA_Ecto-sp13_S_contig12223.1874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12223:1203..1757+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTTGACCAGGTGCTGGTGGCGTGCTTTCACCCCAGGCACGCCTTCCA AGGCCTGGAACAGGACGACGTGCTTAACTACGAAAAGAGGTCTCCGCACC CGACCATCAACCTACTAAGGTGTTGTACCACATGGTATTAGCGAGGTAGT ATCTGATGATCACGCTAACTCCCCCGTGGAGGAATCGAGCGGTCATCGAC GACCTAGGGGGATTGCACCGTACCCCACGGTAGAATCCTAATTGACAGCA CCGTGGGGCGGCGCGGGGTCTTGTTTTCACCCTTTTCACCCTCTTGCCGT CCCTCACTGCTGCTGCTCTGTTGAAATGAACATCACCAGTAGCTGCCCAT ACAATACTTTCGGTTGGGCGATCAACCCCGTACAGAGTGTAGATCTTCGT ACGTATCAGTCGTGCGCTACAGAGACAAGGCGCAAACCAAACCCCCCAAG TCGGCGCGTGTTTGGTTGTTGCGCAGGGCGGACATGATGGACGAGTACAT CGCCATGGGGAGAACGCTCGGCATCGCAGAGCACAACGAGAGGAGGTTAC ACCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12223:1203..1757+

>mRNA_Ecto-sp13_S_contig12223.1874.1 ID=mRNA_Ecto-sp13_S_contig12223.1874.1|Name=mRNA_Ecto-sp13_S_contig12223.1874.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12223:1203..1757+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTTGACCAGGTGCTGGTGGCGTGCTTTCACCCCAGGCACGCCTTCCA
AGGCCTGGAACAGGACGACGTGCTTAACTACGAAAAGAGGTCTCCGCACC
CGACCATCAACCTACTAAGGGCGGACATGATGGACGAGTACATCGCCATG
GGGAGAACGCTCGGCATCGCAGAGCACAACGAGAGGAGGTTACACCAG
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