mRNA_Ecto-sp13_S_contig75235.18709.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig75235.18709.1
Unique NamemRNA_Ecto-sp13_S_contig75235.18709.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig75235.18709.1 vs. uniprot
Match: A0A6H5KL44_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL44_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.690e-23
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:    1 GVEAERAHLLVDIIQNLERDSYFYETRTMQFRVRENDALHTAFKNAGEA 147
            GVEAERAHLLVDIIQNLERDSYFYETRTMQF VRENDALHTAFKNAGEA
Sbjct:  319 GVEAERAHLLVDIIQNLERDSYFYETRTMQFGVRENDALHTAFKNAGEA 367
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BLAST of mRNA_Ecto-sp13_S_contig75235.18709.1 vs. uniprot
Match: A0A2G9R714_LITCT (m7GpppX diphosphatase n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9R714_LITCT)

HSP 1 Score: 61.2 bits (147), Expect = 5.730e-10
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 GVEAERAHLLVDIIQNLERDSYFYETRTMQFRVRENDALHTAFKNAGE 144
            G+  ERAHLL D+IQNLE +S +YETRT+ + +RE+DAL   FK++G+
Sbjct:  181 GITVERAHLLSDVIQNLEMNSRYYETRTLTYALREDDALLKCFKDSGK 228
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BLAST of mRNA_Ecto-sp13_S_contig75235.18709.1 vs. uniprot
Match: UPI000854EBCA (m7GpppX diphosphatase n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854EBCA)

HSP 1 Score: 61.6 bits (148), Expect = 7.620e-10
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 GVEAERAHLLVDIIQNLERDSYFYETRTMQFRVRENDALHTAFKNAGE 144
            G   ERAHLL D+IQNLE DS +YETRT+ + +RE++AL  +FK+AG+
Sbjct:  281 GTTVERAHLLHDVIQNLEMDSRYYETRTLTYALREDEALLKSFKDAGK 328
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BLAST of mRNA_Ecto-sp13_S_contig75235.18709.1 vs. uniprot
Match: C1C436_LITCT (m7GpppX diphosphatase n=2 Tax=Ranidae TaxID=8397 RepID=C1C436_LITCT)

HSP 1 Score: 61.2 bits (147), Expect = 1.050e-9
Identity = 27/48 (56.25%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 GVEAERAHLLVDIIQNLERDSYFYETRTMQFRVRENDALHTAFKNAGE 144
            G+  ERAHLL D+IQNLE +S +YETRT+ + +RE+DAL   FK++G+
Sbjct:  281 GITVERAHLLSDVIQNLEMNSRYYETRTLTYALREDDALLKCFKDSGK 328
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BLAST of mRNA_Ecto-sp13_S_contig75235.18709.1 vs. uniprot
Match: A0A0F8AD40_LARCR (m7GpppX diphosphatase n=5 Tax=Sciaenidae TaxID=30870 RepID=A0A0F8AD40_LARCR)

HSP 1 Score: 58.5 bits (140), Expect = 9.820e-9
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 GVEAERAHLLVDIIQNLERDSYFYETRTMQFRVRENDALHTAFKNAG 141
            G   ERAHLL D+IQNL+ D  +YETRT+ F +R ND L + FK AG
Sbjct:  289 GCGVERAHLLADVIQNLQSDPCYYETRTLYFPLRANDGLLSKFKEAG 335
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BLAST of mRNA_Ecto-sp13_S_contig75235.18709.1 vs. uniprot
Match: A0A8B8BBU9_CRAVI (m7GpppX diphosphatase n=1 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8BBU9_CRAVI)

HSP 1 Score: 58.2 bits (139), Expect = 1.290e-8
Identity = 24/47 (51.06%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 GVEAERAHLLVDIIQNLERDSYFYETRTMQFRVRENDALHTAFKNAG 141
            G EA+RAHLL D+I+N+E  S++Y+ +T+ ++VRE+D L+TAF   G
Sbjct:  266 GFEADRAHLLTDVIENIEMKSHYYKEKTLVYKVREDDPLYTAFLEHG 312
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BLAST of mRNA_Ecto-sp13_S_contig75235.18709.1 vs. uniprot
Match: A0A6P7J6N1_9TELE (m7GpppX diphosphatase n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7J6N1_9TELE)

HSP 1 Score: 58.2 bits (139), Expect = 1.330e-8
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 GVEAERAHLLVDIIQNLERDSYFYETRTMQFRVRENDALHTAFKNAGE 144
            G   ERAHL+ D+IQNL+ D  +Y+TRT+ F+++END L + FK AG+
Sbjct:  279 GCGVERAHLIGDVIQNLQSDPQYYKTRTLYFQLKENDGLLSKFKEAGK 326
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BLAST of mRNA_Ecto-sp13_S_contig75235.18709.1 vs. uniprot
Match: UPI00144837CF (m7GpppX diphosphatase n=1 Tax=Epinephelus lanceolatus TaxID=310571 RepID=UPI00144837CF)

HSP 1 Score: 57.4 bits (137), Expect = 2.510e-8
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 GVEAERAHLLVDIIQNLERDSYFYETRTMQFRVRENDALHTAFKNAG 141
            G   ERAHLL D+IQNL+ D+ FY+TRT+ F +R +D L + FK AG
Sbjct:  282 GCGVERAHLLADVIQNLQSDAQFYKTRTLYFPLRADDGLLSKFKEAG 328
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BLAST of mRNA_Ecto-sp13_S_contig75235.18709.1 vs. uniprot
Match: UPI0018860937 (m7GpppX diphosphatase n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI0018860937)

HSP 1 Score: 57.0 bits (136), Expect = 3.440e-8
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    1 GVEAERAHLLVDIIQNLERDSYFYETRTMQFRVRENDALHTAFKNAGE 144
            G   ERAHLL D+IQNL+ D ++Y+TRT+ F +R +D L   FK AG+
Sbjct:  282 GCGVERAHLLTDVIQNLQSDPHYYKTRTLSFPLRADDGLLAQFKEAGK 329
[Close]
BLAST of mRNA_Ecto-sp13_S_contig75235.18709.1 vs. uniprot
Match: A0A672ZWW1_9TELE (m7GpppX diphosphatase n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672ZWW1_9TELE)

HSP 1 Score: 57.0 bits (136), Expect = 3.450e-8
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 GVEAERAHLLVDIIQNLERDSYFYETRTMQFRVRENDALHTAFKNAG 141
            G   ERAHLL D+IQNL+ D  +Y+TRT+ F +R +D L + FK+AG
Sbjct:  283 GCSVERAHLLTDVIQNLQSDPQYYKTRTLHFPLRADDGLLSRFKDAG 329
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig75235.18709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL44_9PHAE2.690e-2397.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2G9R714_LITCT5.730e-1056.25m7GpppX diphosphatase n=1 Tax=Lithobates catesbeia... [more]
UPI000854EBCA7.620e-1058.33m7GpppX diphosphatase n=1 Tax=Nanorana parkeri Tax... [more]
C1C436_LITCT1.050e-956.25m7GpppX diphosphatase n=2 Tax=Ranidae TaxID=8397 R... [more]
A0A0F8AD40_LARCR9.820e-957.45m7GpppX diphosphatase n=5 Tax=Sciaenidae TaxID=308... [more]
A0A8B8BBU9_CRAVI1.290e-851.06m7GpppX diphosphatase n=1 Tax=Crassostrea virginic... [more]
A0A6P7J6N1_9TELE1.330e-852.08m7GpppX diphosphatase n=1 Tax=Parambassis ranga Ta... [more]
UPI00144837CF2.510e-855.32m7GpppX diphosphatase n=1 Tax=Epinephelus lanceola... [more]
UPI00188609373.440e-852.08m7GpppX diphosphatase n=1 Tax=Syngnathus acus TaxI... [more]
A0A672ZWW1_9TELE3.450e-853.19m7GpppX diphosphatase n=1 Tax=Sphaeramia orbicular... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig75235contigEcto-sp13_S_contig75235:159..308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score101.7
Seed ortholog evalue1e-19
Seed eggNOG ortholog2880.D8LCA8
Preferred nameDCPS
Model size150
KEGG rclassRC00002
KEGG koko:K01301,ko:K03494,ko:K12584,ko:K12860
KEGG ReactionR04368,R06153
KEGG Pathwayko00601,ko01100,ko03018,ko03040,map00601,map01100,map03018,map03040
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000288,GO:0000290,GO:0000291,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000398,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004779,GO:0004780,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006163,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008047,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009117,GO:0009150,GO:0009259,GO:0009266,GO:0009267,GO:0009408,GO:0009605,GO:0009628,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010629,GO:0010941,GO:0016070,GO:0016071,GO:0016462,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0016819,GO:0019219,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0030234,GO:0031086,GO:0031323,GO:0031325,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032069,GO:0032075,GO:0032991,GO:0033554,GO:0034641,GO:0034655,GO:0035690,GO:0035770,GO:0036245,GO:0036464,GO:0042221,GO:0042493,GO:0042594,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044692,GO:0045292,GO:0045935,GO:0046483,GO:0046700,GO:0047627,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050072,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051716,GO:0055086,GO:0060255,GO:0060548,GO:0060700,GO:0065007,GO:0065009,GO:0070013,GO:0070566,GO:0070887,GO:0071310,GO:0071496,GO:0071704,GO:0072521,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0098772,GO:0140098,GO:1901135,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1901917,GO:1901919,GO:1905777,GO:1905779,GO:1990904
Exons1
EggNOG free text desc.m7G(5')pppN diphosphatase activity
EggNOG OGsCOG5075@1,KOG3969@2759
EC2.4.99.4,3.4.17.21,3.6.1.59
Cds size150
COG Functional cat.M
CAZyGT29
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko01003,ko03019,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464021.0266175-CDS-Ecto-sp13_S_contig75235:158..3081681464021.0266175-CDS-Ecto-sp13_S_contig75235:158..308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig75235 159..308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig75235.18709.1prot_Ecto-sp13_S_contig75235.18709.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig75235 159..308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig75235.18709.1

>prot_Ecto-sp13_S_contig75235.18709.1 ID=prot_Ecto-sp13_S_contig75235.18709.1|Name=mRNA_Ecto-sp13_S_contig75235.18709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
GVEAERAHLLVDIIQNLERDSYFYETRTMQFRVRENDALHTAFKNAGEA*
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mRNA from alignment at Ecto-sp13_S_contig75235:159..308+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig75235.18709.1 ID=mRNA_Ecto-sp13_S_contig75235.18709.1|Name=mRNA_Ecto-sp13_S_contig75235.18709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75235:159..308+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTGGAGGCGGAGCGAGCCCACCTACTCGTAGACATCATCCAAAACCT
CGAGAGAGACAGCTACTTTTACGAGACGCGTACGATGCAGTTCAGGGTCC
GCGAGAACGACGCCCTCCACACGGCCTTCAAGAACGCGGGCGAGGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig75235:159..308+

>mRNA_Ecto-sp13_S_contig75235.18709.1 ID=mRNA_Ecto-sp13_S_contig75235.18709.1|Name=mRNA_Ecto-sp13_S_contig75235.18709.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig75235:159..308+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTGGAGGCGGAGCGAGCCCACCTACTCGTAGACATCATCCAAAACCT
CGAGAGAGACAGCTACTTTTACGAGACGCGTACGATGCAGTTCAGGGTCC
GCGAGAACGACGCCCTCCACACGGCCTTCAAGAACGCGGGCGAGGCGTGA
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