mRNA_Ecto-sp13_S_contig7484.18670.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7484.18670.1 vs. uniprot
Match: D7FTJ6_ECTSI (Oxa1 or Cox18/Oxa2 homolog, mitochondrial integral inner membrane protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTJ6_ECTSI) HSP 1 Score: 791 bits (2042), Expect = 5.780e-285 Identity = 433/487 (88.91%), Postives = 443/487 (90.97%), Query Frame = 1
Query: 1 MLTGTGLSRQSRRLAGRVHGSGTSLVAPAIVADRLAYHDGSDSSKRTCRGDPRPPQHLRQAQTLHVPALQQRGQRISSITRLGGDGGTSGVAAFGGERGLHLSATWRVAASAGGTLGTRRSFWGRSGGDGSEAGSSXXXXXXXXXXXXEDSAGFPETGGAADADGWSAPPDAWMPDEVPPEIPQDASMPGSDAGEGFSVDSAAAALDAVAGAAPDASAVGTAMTATGLSAADLGMYPHHLFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFLVMSKRLNMIKPEMAVHQGKMQDIKNRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKMILSMFAQFPVFISLFLATRDMGMYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNPKVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWPLPEDMPAPAAPADNK 1461
MLTG LSRQSRRL GRVHG+G SL APAI +RL +HDGSD+SKRTCRG RPPQHL QAQTLHVPALQQRG R SS+TRLGGDG G AA GG RGL LSA WR AA+AGGT+G RRSFWGRSGGDGS+ XXXXXXXXXXXX AADADGWSAPPDAW PDEVPPEIPQDAS+PG D GEGFSVDSAAAALDAVAGAAPDASAVGTAMTATGLSAADLGMYPHHLFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFL MSKRLNMIKPEMAVHQGKMQDIKNRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKM+LSMFAQFPVFISLFLATRDMG YFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNPKVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWPLPEDMPAPAAPAD K
Sbjct: 1 MLTGARLSRQSRRLVGRVHGNGASLTAPAIAENRLTHHDGSDNSKRTCRGYLRPPQHLLQAQTLHVPALQQRGHRSSSVTRLGGDGSAIGAAALGGGRGLDLSAAWRGAAAAGGTVGARRSFWGRSGGDGSQXXXXXXXXXXXXXXXXXXXXXXXXX--AADADGWSAPPDAWAPDEVPPEIPQDASVPGFDVGEGFSVDSAAAALDAVAGAAPDASAVGTAMTATGLSAADLGMYPHHLFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFLGMSKRLNMIKPEMAVHQGKMQDIKNRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKMMLSMFAQFPVFISLFLATRDMGTYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNPKVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWPLPEDMPAPAAPADKK 485
BLAST of mRNA_Ecto-sp13_S_contig7484.18670.1 vs. uniprot
Match: A0A482SHT9_9ARCH (YidC/Oxa1 family membrane protein insertase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHT9_9ARCH) HSP 1 Score: 148 bits (374), Expect = 9.060e-37 Identity = 93/252 (36.90%), Postives = 137/252 (54.37%), Query Frame = 1
Query: 661 TAMTATGLSAADLGMYPHHLFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFLVMSKRLNMIKPEMAVHQGKMQDIKNRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKMILSMFAQFPVFISLFLATRDMGMYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNPKVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWP 1416
T+ A ++ D Y M I+YV AGVPYWEAIV +V R +LP V S RL + +PEM Q M N ++ ++K +EM +L +H+++ + +L QFP+FI+ F+A RDMG YFPG++TGG W NL+APD + LPI S S +L++ELG+D P + + + R ++V VP+ SMP G+ VYW T NVF ++Q + + V++AL P
Sbjct: 75 TSTAAVAVANIDDANYVVGTVMKFIDYVHTLAGVPYWEAIVFTTVGLRFLLLPVVLKTTQSSARLAVARPEMQKVQEAMAKDTNTADSRVQLK---------YQKEMSAVLSKHKVNPVRALLWPVCQFPIFIAFFMALRDMGTYFPGFLTGGDFWFTNLSAPDSFYYLPIANSVSFLLMIELGAD----GMPTQQQATFRWVMRGLAVALVPLTSSMPQGLFVYWVTNNVFSLVQTMILKQESVRKALDIP 313
BLAST of mRNA_Ecto-sp13_S_contig7484.18670.1 vs. uniprot
Match: A0A7S3XPC4_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPC4_HETAK) HSP 1 Score: 136 bits (343), Expect = 8.700e-32 Identity = 103/317 (32.49%), Postives = 162/317 (51.10%), Query Frame = 1
Query: 502 APPDAWMPDE--VPPEIPQDASMPGSDAGEGFSVDSAAAALDAVAGAAPDASAVGTAMTATGLSAADLGMYPHHLFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFLVMSKRLNMIKPEMAVHQGKMQDIKNRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKMILSMFAQFPVFISLFLATRDMGMYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNP-KVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWP-LPEDMPAP 1440
A P ++PD + P Q+ S P A G S+DS+ A + V TGL + +G P + M +E + AG+PYW AIV +++A R A LP + + + ++ +I+PEM KMQ ++++ E ML++QEM LL +H +H K ++ F Q P+F+S+F ++MG +FPG TGGL +++L A DPT+ LP++T + ++ELG A P P K R M+V + + PAGV VYW T+N F ++Q + ++ AL P +PE + P
Sbjct: 96 ATPTDFLPDSSLIDPSTTQNISGPSDYAVVGASLDSSFA------------TEVAATEVLTGLES--IGYAPSEIVMRTVEMLHVGAGLPYWGAIVALTLALRTATLPIHVSSMRNAAKMAIIRPEMEAMTKKMQ----------QLQDPTSEEQMLMAQEMQALLNKHDVHPFKNLIYPFLQLPLFVSVFFGLKEMGTHFPGLATGGLGPVLDLTAADPTFVLPVVTGALFLGMVELGG---GADMPQTPTTRQLKWFMRAMAVATPVMTYQFPAGVFVYWMTSNAFTLMQSVALKNPTIKAALDIPEIPESIKNP 385
BLAST of mRNA_Ecto-sp13_S_contig7484.18670.1 vs. uniprot
Match: A0A452H4Y7_9SAUR (OXA1L mitochondrial inner membrane protein n=1 Tax=Gopherus agassizii TaxID=38772 RepID=A0A452H4Y7_9SAUR) HSP 1 Score: 120 bits (302), Expect = 1.030e-26 Identity = 87/252 (34.52%), Postives = 131/252 (51.98%), Query Frame = 1
Query: 679 GLSAADLGMY-PHHLFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFLVMSKRLNMIKPEMAVHQGKMQDIK---NRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKMILSMFAQFPVFISLFLATRDMG-MYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNP-KVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWP 1416
GL+ LG Y P L +++E++ G+P+W AIV +VAAR V P + + +LN PE+ MQD K N+ E + E +M + K H ++ + L Q P+FIS F+A R+M + P +GGL W M+L A DP + LP++ +G+M L++ELG++ G D PN K +FRVM +V +P+ S P V YW T+N+F + Q GL + V+ L P
Sbjct: 37 GLAELGLGSYTPVGLIQNLLEFLHTDLGLPWWGAIVAGTVAARCLVFPLIVKGQREAAKLNNHLPEITRLTQCMQDAKRSGNQFEFSKSYSELSMYQ------------KAHDVNPMRGFLVPLVQAPIFISFFIALREMAALPVPSMQSGGLAWFMDLTAADPLYVLPLVVTGTMWLILELGAES----GVDNPNLKVMKTVFRVMPLVILPLTISFPTAVFTYWLTSNLFSLAQVGLLRVPAVRARLRIP 272
BLAST of mRNA_Ecto-sp13_S_contig7484.18670.1 vs. uniprot
Match: A0A671V0G1_SPAAU (OXA1L mitochondrial inner membrane protein n=2 Tax=Sparus aurata TaxID=8175 RepID=A0A671V0G1_SPAAU) HSP 1 Score: 120 bits (301), Expect = 3.150e-26 Identity = 89/282 (31.56%), Postives = 140/282 (49.65%), Query Frame = 1
Query: 616 LDAVAGAAPDASAVGTAMTATGLSAADLGMY---PHHLFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFLVMSKRLNMIKPEMAVHQGKMQDIKNRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKMILSMFAQFPVFISLFLATRDMG-MYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNP-KVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWPLPEDMPAPAA 1446
++ VA AAP A V A T S +LG+ P L H++E++ G+P+W AIV+ +V AR+AV P + + +LN + PEM+ +M + K + ++ K+H ++ + L Q PVFIS F+A R M + P + TGGL W +L A DP + LPI +G+M ++ELG++ G D PN K +FR+M + +P+ + P V YW T+N F + Q L ++ L +PE + PA+
Sbjct: 61 IEQVADAAPTAVEVLQAAATTEQSLTELGLAGYTPVGLIQHLLEFMHVDLGLPWWGAIVIGTVVARMAVFPVIVKGQREAAKLNNVLPEMSKLTNRMNEAKQS---------GNKFDFAKAYSDLNLFQKKHDVNPLRGFLVPVVQAPVFISFFIALRKMAYLPVPSFQTGGLFWFHDLTAADPFYLLPIAVTGTMFFILELGAES----GIDNPNLRAMKTVFRIMPFIILPLTINFPTAVFTYWLTSNCFSLAQVALLRHPVIRTKLN--IPERIKHPAS 327
BLAST of mRNA_Ecto-sp13_S_contig7484.18670.1 vs. uniprot
Match: UPI00193FE51B (LOW QUALITY PROTEIN: mitochondrial inner membrane protein OXA1L n=1 Tax=Mauremys reevesii TaxID=260615 RepID=UPI00193FE51B) HSP 1 Score: 121 bits (303), Expect = 3.670e-26 Identity = 84/249 (33.73%), Postives = 129/249 (51.81%), Query Frame = 1
Query: 679 GLSAADLGMY-PHHLFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFLVMSKRLNMIKPEMAVHQGKMQDIKNRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKMILSMFAQFPVFISLFLATRDMG-MYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNP-KVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWP 1416
GL+ LG Y P L +++E++ A G+P+W AIV +VAAR V P + + +LN PE+ +MQD K + E E+ K H ++ + L Q PVFIS F+A R+M + P +GGL W ++L A DP + LP++ +G+M L++ELG++ G D PN K +FRVM +V +P+ S P + YW T+N+F + Q GL + ++ L P
Sbjct: 149 GLAELGLGSYTPVGLIQNLLEFLHADLGLPWWGAIVAGTVAARCLVFPLIVKGQREAAKLNNHLPEITRLTQRMQDAK---------RSGNQFEFSKSYSELNLYQKAHDVNPIRGFLVPLVQAPVFISFFIALREMAALPVPSMQSGGLAWFVDLTAADPLYVLPLVVTGTMWLILELGAES----GVDNPNLKVMKTVFRVMPLVILPLTISFPTAIFTYWLTSNLFSLAQVGLLRVPAIRTRLRIP 384
BLAST of mRNA_Ecto-sp13_S_contig7484.18670.1 vs. uniprot
Match: A0A8C2Z1Z6_CYCLU (OXA1L mitochondrial inner membrane protein n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2Z1Z6_CYCLU) HSP 1 Score: 119 bits (298), Expect = 3.960e-26 Identity = 94/286 (32.87%), Postives = 140/286 (48.95%), Query Frame = 1
Query: 607 AAALDAVAGAAPDASAVGTAMTATGLSAADLGMYPHH---LFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFLVMSKRLNMIKPEMAVHQGKMQDIKNRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKMILSMFAQFPVFISLFLATRDMG-MYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNP-KVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWPLPEDMPAPAAP 1449
AA L AAP A V A AT +S +LG+ H L H++E++ G+P+W AIV+ +V AR+AV P + + +LN + PEM +M + K + E+ K+H ++ + L Q PVFIS F+A R M + P TGGL W +L A DP + LP++ +G+M ++ELG++ G D PN K +FR+M V +P+ + P V YW T+N F + Q L + V++ L P PA A P
Sbjct: 25 AAVLSQAVDAAPTAVEVLQA-AATEISLTELGLAAHTPVGLVQHLLEFMHVDLGLPWWGAIVVGTVLARMAVFPVIVKGQREAAKLNNVMPEMTKLTARMNEAKQS---------GNKFDFAKAYSELNLFQKKHDVNPLRGFLIPVVQAPVFISFFIALRKMSYLPVPSMQTGGLLWFTDLTAADPFYILPVVVTGTMFFILELGAES----GVDNPNLRAMKTVFRIMPFVILPLTINFPTAVFTYWLTSNCFSLGQVALLKHPYVRERLRIPERIKHPASALP 296
BLAST of mRNA_Ecto-sp13_S_contig7484.18670.1 vs. uniprot
Match: A0A8B9LLG9_ASTMX (OXA1L mitochondrial inner membrane protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9LLG9_ASTMX) HSP 1 Score: 119 bits (298), Expect = 6.860e-26 Identity = 89/267 (33.33%), Postives = 136/267 (50.94%), Query Frame = 1
Query: 682 LSAADLGM---YPHHLFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFLVMSKRLNMIKPEMAVHQGKMQDIK---NRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKMILSMFAQFPVFISLFLATRDMG-MYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNP-KVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWPLPEDMPAPAAPADN 1458
LS DLG+ P L +++E++ G+P+W AIV ++ AR AV PA+ + +LN + PEM +M + K N+ E + A +E+M+ K+H ++ + L Q PVFIS F+A R M + P TGGL W +L A DP + LP +G+M ++ELG++ G D PN K +FR+M +V +P+ + P V VYW T+NVF + Q L V++ L P + P A P +
Sbjct: 82 LSLTDLGLGNYTPVGLIQNLLEFMHVNIGLPWWCAIVAGTIIARCAVFPAIVKGQREAVKLNNVLPEMTKISNRMNEAKHSGNKFEFSK-----AYSELMM-------FYKKHDVNPVRGFLVPLVQAPVFISFFIALRQMAYLPVPSLQTGGLGWFTDLTAADPYFILPFAVTGTMFAIVELGAES----GLDNPNLRAMKTVFRIMPLVILPMTINFPTAVFVYWLTSNVFSLGQVALLRHPAVRKKLRIPERKTHPPSALPPNE 332
BLAST of mRNA_Ecto-sp13_S_contig7484.18670.1 vs. uniprot
Match: A0A4D9DJ97_9SAUR (Protein ENL-like n=1 Tax=Platysternon megacephalum TaxID=55544 RepID=A0A4D9DJ97_9SAUR) HSP 1 Score: 119 bits (299), Expect = 9.940e-26 Identity = 84/249 (33.73%), Postives = 127/249 (51.00%), Query Frame = 1
Query: 679 GLSAADLGMY-PHHLFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFLVMSKRLNMIKPEMAVHQGKMQDIKNRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKMILSMFAQFPVFISLFLATRDMG-MYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNP-KVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWP 1416
GL+ L Y P L +++E++ A G+P+W AIV +VAAR V P + + +LN PE+ +MQD K + E E+ K H ++ + L Q P+FIS F+A R+M + P TGGL W ++L A DP + LP++ +G+M L++ELG++ G D PN K +FRVM +V +P+ S P V YW T+N+F + Q G + V+ L P
Sbjct: 103 GLAELGLSSYTPVGLIQNLLEFLHADLGLPWWGAIVAGTVAARCLVFPLIVKGQREAAKLNNHLPEITRLTQRMQDAK---------RSGNQFEFSKSYSELNLYQKAHDVNPMRGFLVPLVQAPIFISFFIALREMAALPVPSMQTGGLAWFVDLTAADPLYVLPLVVTGTMWLILELGAES----GVDNPNLKVMKTVFRVMPLVILPLTISFPTAVFTYWLTSNLFSLAQVGFLRVPAVRARLRIP 338
BLAST of mRNA_Ecto-sp13_S_contig7484.18670.1 vs. uniprot
Match: A0A507FCF3_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FCF3_9FUNG) HSP 1 Score: 118 bits (296), Expect = 2.120e-25 Identity = 93/270 (34.44%), Postives = 144/270 (53.33%), Query Frame = 1
Query: 637 APDASAVGTAMTATG-LSAADLGMY-PHHLFMHVIEYVQATAGVPYWEAIVMVSVAARIAVLPAVATFLVMSKRLNMIKPEMAVHQGKMQDIKNRMEANPEIKEAAMAEMMLVSQEMGNLLKQHRIHFPKMILSMFAQFPVFISLFLATRDMG-MYFPGYMTGGLDWMMNLNAPDPTWTLPILTSGSMILLMELGSDMPAAHGPDKPNFNPKVMFRVMSVVFVPVAFSMPAGVLVYWTTTNVFGMLQRGLFEMRPVQQALGWPLPEDMPA 1437
APDA + TA+T G L++ LG Y P + + E V T G+P+W I +V R+A+ P V +S ++ +KP + Q ++Q +K A ++ V ++M ++ K ++ P L Q PVFIS+F R M + PG+ TGG W +L DPT+ LP++ SG+M+++ME G +M AA P + K +FR M V F+P +MPA V VYW T+N ++Q + + V++ALG PL + PA
Sbjct: 130 APDAPVL-TAITQIGDLASLGLGGYGPVGIMQGMFEAVYVTTGLPWWATIASCTVFLRLALFPVVVKSQRVSGQMANLKPLLKPIQDELQLLK--------ASGADRSKQFPVMRKMQDVYKDAGVN-PLGGLWGLVQMPVFISVFFGLRGMADLPVPGFTTGGALWFHDLTLMDPTYILPVVASGTMLVVMEYGMEMQAAANPSQAALM-KNLFRFMLVAFIPFTAAMPAAVFVYWVTSNFLTLIQFLVLKNPAVRKALGIPLLKTFPA 388 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7484.18670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7484.18670.1 >prot_Ecto-sp13_S_contig7484.18670.1 ID=prot_Ecto-sp13_S_contig7484.18670.1|Name=mRNA_Ecto-sp13_S_contig7484.18670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=487bp MLTGTGLSRQSRRLAGRVHGSGTSLVAPAIVADRLAYHDGSDSSKRTCRGback to top mRNA from alignment at Ecto-sp13_S_contig7484:505..7429- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7484.18670.1 ID=mRNA_Ecto-sp13_S_contig7484.18670.1|Name=mRNA_Ecto-sp13_S_contig7484.18670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6925bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7484:505..7429- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7484:505..7429- >mRNA_Ecto-sp13_S_contig7484.18670.1 ID=mRNA_Ecto-sp13_S_contig7484.18670.1|Name=mRNA_Ecto-sp13_S_contig7484.18670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1461bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7484:505..7429- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |