mRNA_Ecto-sp13_S_contig7476.18664.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7476.18664.1
Unique NamemRNA_Ecto-sp13_S_contig7476.18664.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7476.18664.1 vs. uniprot
Match: D8LNF5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNF5_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 6.460e-106
Identity = 166/170 (97.65%), Postives = 169/170 (99.41%), Query Frame = 3 
Query:    3 WWGCSVAGAKTGERDEEEGRPVFTLHYDAYEAFEEADHDVCFVDRYRLVHLEDGAEMTWKREGEEVDREAVLASLADEDVNLQEVMAAQDEEDANEGAESVETRSMKAIAQLPPHQQAAMMAGYRRMADVIKEHLRAKITRTGGETVVSEADVENMFRDVRGSGGSSGSF 512
            WWGCSVAGAKTGERDEEEGRPVFTLHYDAYEAFEEADHDVCFVDRYRLVHLEDGAEMTWKREGEEVDREAVLASLADEDVNLQEVMAAQ+EEDANEGAESVETRSMKAIAQLPPHQQAAMMAGYRRMADVIK+HLRAKIT+TGGETVVSEADVENMFRDVRGSGGSSG F
Sbjct:  119 WWGCSVAGAKTGERDEEEGRPVFTLHYDAYEAFEEADHDVCFVDRYRLVHLEDGAEMTWKREGEEVDREAVLASLADEDVNLQEVMAAQEEEDANEGAESVETRSMKAIAQLPPHQQAAMMAGYRRMADVIKKHLRAKITQTGGETVVSEADVENMFRDVRGSGGSSGFF 288
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BLAST of mRNA_Ecto-sp13_S_contig7476.18664.1 vs. uniprot
Match: A0A7S2YY33_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2YY33_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 1.160e-5
Identity = 47/179 (26.26%), Postives = 78/179 (43.58%), Query Frame = 3 
Query:    3 WWGCSVAGA--KTGERDEEEGRPV------------FTLHYDAYEAFEEADHDVCFVDRYRLVHLEDGAEMTWKREGEEVDREA----VLASLADEDVNLQEVMAAQDEEDANEGAESVETRSMKAIAQLPPHQQAAMMAGYRRMADVIKEHLRAKITRTGGETVVSEADVENMFRDVR 485
            WW   +     K G+ + +EG+              + L Y  YEAFEE +  V F+D + L+  +D   + W+ +G + + E       A+   +DV     MA         GA++V +  M+ + ++P  +Q    + YR MAD  K+ LR  +   G   V  E DV  M   ++
Sbjct:    5 WWAGQLVAEEEKEGQEEVQEGQEAEAGSLPFAASSKWRLRYQKYEAFEEEERTVVFLDPHLLLDFDDMQVLEWREDGSDYEPEMRQRPEFAAAERDDVVAIGDMA---------GADAV-SEGMRELNKMPFDKQQIFASSYRVMADSFKQKLREILKNKGEGYVFGEEDVRTMIEGIK 173
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BLAST of mRNA_Ecto-sp13_S_contig7476.18664.1 vs. uniprot
Match: A0A7S2YY04_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2YY04_9CHLO)

HSP 1 Score: 56.2 bits (134), Expect = 4.660e-5
Identity = 47/179 (26.26%), Postives = 78/179 (43.58%), Query Frame = 3 
Query:    3 WWGCSVAGA--KTGERDEEEGRPV------------FTLHYDAYEAFEEADHDVCFVDRYRLVHLEDGAEMTWKREGEEVDREA----VLASLADEDVNLQEVMAAQDEEDANEGAESVETRSMKAIAQLPPHQQAAMMAGYRRMADVIKEHLRAKITRTGGETVVSEADVENMFRDVR 485
            WW   +     K G+ + +EG+              + L Y  YEAFEE +  V F+D + L+  +D   + W+ +G + + E       A+   +DV     MA         GA++V +  M+ + ++P  +Q    + YR MAD  K+ LR  +   G   V  E DV  M   ++
Sbjct:  131 WWAGQLVAEEEKEGQEEVQEGQEAEAGSLPFAASSKWRLRYQKYEAFEEEERTVVFLDPHLLLDFDDMQVLEWREDGSDYEPEMRQRPEFAAAERDDVVAIGDMA---------GADAV-SEGMRELNKMPFDKQQIFASSYRVMADSFKQKLREILKNKGEGYVFGEEDVRTMIEGIK 299
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7476.18664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNF5_ECTSI6.460e-10697.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2YY33_9CHLO1.160e-526.26Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A7S2YY04_9CHLO4.660e-526.26Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7476contigEcto-sp13_S_contig7476:776..3333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score211.5
Seed ortholog evalue2.1e-52
Seed eggNOG ortholog2880.D8LNF5
Model size1393
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2E99Q@1,2SFNQ@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_004050.1
Cds size345
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7476.18664.1prot_Ecto-sp13_S_contig7476.18664.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7476 1159..2455 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.526347-UTR-Ecto-sp13_S_contig7476:775..9111681464016.526347-UTR-Ecto-sp13_S_contig7476:775..911Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7476 776..911 +
1681464016.5394814-UTR-Ecto-sp13_S_contig7476:1124..11581681464016.5394814-UTR-Ecto-sp13_S_contig7476:1124..1158Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7476 1125..1158 +
1681464016.5962934-UTR-Ecto-sp13_S_contig7476:2455..33331681464016.5962934-UTR-Ecto-sp13_S_contig7476:2455..3333Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7476 2456..3333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464016.551068-CDS-Ecto-sp13_S_contig7476:1158..12421681464016.551068-CDS-Ecto-sp13_S_contig7476:1158..1242Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7476 1159..1242 +
1681464016.5712347-CDS-Ecto-sp13_S_contig7476:1661..17601681464016.5712347-CDS-Ecto-sp13_S_contig7476:1661..1760Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7476 1662..1760 +
1681464016.5847313-CDS-Ecto-sp13_S_contig7476:2293..24551681464016.5847313-CDS-Ecto-sp13_S_contig7476:2293..2455Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7476 2294..2455 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7476.18664.1

>prot_Ecto-sp13_S_contig7476.18664.1 ID=prot_Ecto-sp13_S_contig7476.18664.1|Name=mRNA_Ecto-sp13_S_contig7476.18664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MTWKREGEEVDREAVLASLADEDVNLQEVMAAQDEEDANEGAESVETRSM
KAIAQLPPHQQAAMMAGYRRMADVIKEHLRAKITRTGGETVVSEADVENM
FRDVRGSGGSSGSF*
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mRNA from alignment at Ecto-sp13_S_contig7476:776..3333+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7476.18664.1 ID=mRNA_Ecto-sp13_S_contig7476.18664.1|Name=mRNA_Ecto-sp13_S_contig7476.18664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2558bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7476:776..3333+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGTGGGGCTGCTCGGTGGCCGGAGCGAAGACGGGAGAGCGGGACGAA
GAGGAGGGCCGGCCGGTGTTCACGCTGCACTACGATGCCTACGAGGCGTT
CGAGGAGGCAGACCACGACGTGTGCTTCGTGGACAGGTAACTAACCAACC
GCCCGCTGGTTCCCTTCGCACCCAGTGCGCCTGGCGTGTTTTCGCCGCGT
GTGTATCGTGAATCGTTTTTGTTTGCACTTCTGGACGGTGGGTTTTGTCT
TGAGTGTTGCCATCCATGTGATTCCATCCATGTGACTTGCTTTACACTGC
ATAGTGACGCTTGCCAACGAACACTTTCTATGCCACTTTTTTGTATCAGG
TATCGCCTTGTGCACCTTGAGGACGGGGCGGAGATGACGTGGAAGCGGGA
AGGAGAGGAGGTGGATAGGGAGGCGGTGCTGGCTTCCCTCGCTGACGAAG
ACGTGAACCTCCAGGAGGTAAACAAACAACATGTGCCCGCCCGCGTTTTT
TTTCTAGCACAGAAGGCTTAGGCTTGGTAGGTGGGACGGGGGCTGCCTCG
ATGACTTTGATTGTTTTACTTATTTTGTGAGCAGATGTGAGGTCGTAGTA
CAACGTTACAGTAGCCTGACGGCGTTGCCACCATGACGCGCTCCCGGACG
CCCGTTGAGAAAACAATCGGTGTCACGAGGTCAACTCTTCGATACAGCCC
GACTGCAGTGGTTTGCTGCACCGCTTTCAGCATTCTCTCTCTCTCGAGGT
TTGTATTTCTGTGCTTTCCCGTGTGCGGCAAGCGTTGACTGAGATGTACT
GCATGATATATCTCGGTACCGTGTAGGCGATTGATTGTCCTCTCCGTCTG
CGTCGTGTCCGTGTGTCTTGTCACCCCATTCCACAGGTGATGGCTGCGCA
GGACGAGGAAGACGCGAACGAGGGCGCAGAGAGCGTAGAGACCCGGAGCA
TGAAAGCCATAGCACAATTGCCCCCGCACCAGCAGGTACGCGCCCGTCCA
CACATCGCGTTCACATCAGTTAAAACTACTGTTGTAGGAAAACGCTTGTG
TTCGAGCCTTCACAGTAGTTCTCACAAGGGGCCTCACCTATGTTCTGGTG
TGTCGGCTGTCGTTTTTAGTTTGACCGGTGAGACGGCCTCGCTTAAATTT
TCGTCGGTAAGGCGTTTTTCCTCTAGTGAAAACCATGGCTGCAACTTGTT
TCGCACACGTGGCGTCGCAGAATGCTTGCAGCAAAAGGCTTGGGGGTTTG
CGTGCGGGCGGTGGTTTAGGGCTTAAAAGCCTTGTACCTCAACTGGGGTA
ATTCCTTTCGCGTTACATTCCACCTGAGCACCCCACACAGGCAATCCGCG
TGGCTCGTTTCCCTCAGAATTTATTGGCCCATGAACACGGTCCGCCCAAG
CGCCCCCTGCTGTGGGAGAAGCTGTTGTTTCGCAGAACGTGGAAGAACTA
AGGCTCCCTTTTCCCCAATGTACGCCGTGATGCTTGTGCATCGCAAACCT
TGATCGGCGGAAACCCAGGCGGCAATGATGGCAGGTTACCGACGAATGGC
CGACGTCATCAAGGAGCATCTGCGGGCGAAGATAACGCGGACCGGCGGAG
AGACGGTGGTGTCCGAGGCGGACGTGGAAAACATGTTTCGCGACGTGCGG
GGCAGTGGCGGAAGTAGCGGCTCCTTCTGATCGACGATCCACCCAGCGGG
CGGCAGCGGTAGTGCGGGGGGGTGCACGTCGGCCATTTGAGCTGGGGGAT
TTTAAACATCGTGCCGGGAGGATGTGGCTGTGGTGGTGTATGACTGCAGC
AGCTGCTGCGTCGCCCAGCGATGCAGACGCTGTTCCTTCTGGAATCGAAT
TGTTCGGTGGCGGTGACAGCCATAGCGTTGACAACAACTCCACACTGGAA
GCATGCGGTGGGGAGCTTCCTTTGCATTCCCAAGATACTCGGGCACACGT
GCTGCGTGTATCATGATGGGTAGGGAGCTTGAATAGGCCACGTTCGATGT
TTTTTTCTAAGTTTTTCACCACTCCGTAATTTTGTCGGTAGATGCTTTTT
GTGTTCAAACTTGCCGTTGCCTTGAACACGACAATACTTGTTCGTATGTA
ATGTTTTGAAGTACTGCTTGCTGTGAGGATGAACATGGAGAAATGCACGG
CGGATGATGCTGCGTTGATTACTCTTAGGTGTTCGTGGGTCCGTTGTTTC
GTACCGCTTTGGAGGCTGGTTATAAGACGCGGTGGTAGCCAAGGCTGTGA
GCAAGCCAGGTTTCGCTTTTGTCACACTGAAAGCGGAAAATACGTGAATA
AGTGTCTATCAGCCAGCTCAGTATGATGCGTAAAGCTGCCCCAAACAAAG
CTGCTCTCGGGAAGTGATGGGTTTTGAACCGACGAATACAGCAATTTGGG
ATGTGCGGACGAATGGATGTGATGAGAGAGCTTTGGTTTTGACGTGGGCC
AAATCTTTGCATGGGCGTGAATACACTTGTGCACAACCAGTCGTGATGCT
CATGCGAACTTGTGTACCCACGCGCCATACAGAGCTAGCTCCCATTACGG
CTGCCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7476:776..3333+

>mRNA_Ecto-sp13_S_contig7476.18664.1 ID=mRNA_Ecto-sp13_S_contig7476.18664.1|Name=mRNA_Ecto-sp13_S_contig7476.18664.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7476:776..3333+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTGGAAGCGGGAAGGAGAGGAGGTGGATAGGGAGGCGGTGCTGGC
TTCCCTCGCTGACGAAGACGTGAACCTCCAGGAGGTGATGGCTGCGCAGG
ACGAGGAAGACGCGAACGAGGGCGCAGAGAGCGTAGAGACCCGGAGCATG
AAAGCCATAGCACAATTGCCCCCGCACCAGCAGGCGGCAATGATGGCAGG
TTACCGACGAATGGCCGACGTCATCAAGGAGCATCTGCGGGCGAAGATAA
CGCGGACCGGCGGAGAGACGGTGGTGTCCGAGGCGGACGTGGAAAACATG
TTTCGCGACGTGCGGGGCAGTGGCGGAAGTAGCGGCTCCTTCTGA
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