mRNA_Ecto-sp13_S_contig7445.18627.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7445.18627.1
Unique NamemRNA_Ecto-sp13_S_contig7445.18627.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7445.18627.1 vs. uniprot
Match: D7G986_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G986_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.080e-20
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 1 
Query:    1 SLVQSAAERAAVEAAWAARGSAATSGSNIDPPIVTDRRALDRLLHAGSMSSSGSEGERDDFAVAIKV 201
            SLV+SAAERAAVEAAWAA+ SAA  GSNIDPPIVTDR  L    HAGSMSS+GSEGE  DF+VA K 
Sbjct:   90 SLVRSAAERAAVEAAWAAKASAAALGSNIDPPIVTDRVQL----HAGSMSSAGSEGESGDFSVAAKA 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7445.18627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G986_ECTSI4.080e-2074.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7445contigEcto-sp13_S_contig7445:1388..2102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size223
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-13_002990.1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464013.7359483-CDS-Ecto-sp13_S_contig7445:1387..15161681464013.7359483-CDS-Ecto-sp13_S_contig7445:1387..1516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7445 1388..1516 +
1681464013.7508106-CDS-Ecto-sp13_S_contig7445:2009..21021681464013.7508106-CDS-Ecto-sp13_S_contig7445:2009..2102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7445 2010..2102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7445.18627.1prot_Ecto-sp13_S_contig7445.18627.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7445 1388..2102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7445.18627.1

>prot_Ecto-sp13_S_contig7445.18627.1 ID=prot_Ecto-sp13_S_contig7445.18627.1|Name=mRNA_Ecto-sp13_S_contig7445.18627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
SLVQSAAERAAVEAAWAARGSAATSGSNIDPPIVTDRRALDRLLHAGSMS
SSGSEGERDDFAVAIKVSLACHC*
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mRNA from alignment at Ecto-sp13_S_contig7445:1388..2102+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7445.18627.1 ID=mRNA_Ecto-sp13_S_contig7445.18627.1|Name=mRNA_Ecto-sp13_S_contig7445.18627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=715bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7445:1388..2102+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCTCGTACAATCGGCAGCAGAAAGGGCGGCAGTCGAAGCCGCCTGGGC
GGCCAGAGGTTCAGCAGCAACCTCTGGATCAAACATCGACCCGCCGATTG
TGACAGACAGGCGTGCCCTTGACCGACTAGTTTGTGATGCTGGACGATTG
GTGTACCTTCGTGCTGTGCTGCTGGTTTTGTCCACCAAACCTACGCCCGT
ACGCTCAGCGTTTGTGTACACACGGATCGTTGGAGTGTATTGTGATGGCT
ACCGGCAGGATGATCTCTCGCATGCAGTCTGTAGGTTTGGGCGAGTATTT
TGGCAAGAGCTAGCGGCACCTCTAGTGCGCTAGCCTTTAGTCGATTGACC
CTTGTAGCACCTAACTGTTGGTACTGATGTGGCTTCGATCGCCTCGTTCA
GGAGAAGCCCGAGTCGCGACAACAGAGGTGGCAAGGGTTCAAATAAGAAA
AGGGCCGGGAAACAGAGGAAAGGGTAGAGAGAACTGCGTTTGGCCCTGTC
GTGAATGACAGCCCGTGTTCTGCACTGCCGTCTAGTTCTGTTGTGCCACT
TACAAGACGTCTTTGCGAAACCTCTACCACGTTCGAAACCACGGTGCCTT
GCTTGTTGCATTCGGTGTCAAGTTGCACGCAGGCTCGATGTCATCTTCTG
GTTCGGAAGGCGAGAGAGATGATTTTGCTGTTGCAATCAAGGTGAGCCTT
GCGTGCCACTGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7445:1388..2102+

>mRNA_Ecto-sp13_S_contig7445.18627.1 ID=mRNA_Ecto-sp13_S_contig7445.18627.1|Name=mRNA_Ecto-sp13_S_contig7445.18627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7445:1388..2102+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCTCGTACAATCGGCAGCAGAAAGGGCGGCAGTCGAAGCCGCCTGGGC
GGCCAGAGGTTCAGCAGCAACCTCTGGATCAAACATCGACCCGCCGATTG
TGACAGACAGGCGTGCCCTTGACCGACTATTGCACGCAGGCTCGATGTCA
TCTTCTGGTTCGGAAGGCGAGAGAGATGATTTTGCTGTTGCAATCAAGGT
GAGCCTTGCGTGCCACTGCTAA
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