mRNA_Ecto-sp13_S_contig7440.18621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7440.18621.1
Unique NamemRNA_Ecto-sp13_S_contig7440.18621.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7440.18621.1 vs. uniprot
Match: A0A6H5LI96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI96_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 3.810e-74
Identity = 124/132 (93.94%), Postives = 127/132 (96.21%), Query Frame = 3 
Query:  444 QASRSFLTKTDAIMFLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLSNGCRPSTAPEASLRVKPQQTRPRSRLRRAISSTSSFNRTGCSKGSVGADAGLYMEEEEERAAAVNAVR 839
            QASRSFLTKTDAI+FLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTL+NG RPST PEASLRVKPQQTRPRSRLRRA+SSTSS N TGC KGSVGADAGLYMEEEEERAAAVNAVR
Sbjct:   22 QASRSFLTKTDAIIFLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHLGPGSYDLPPTLNNGRRPSTGPEASLRVKPQQTRPRSRLRRAVSSTSSVNGTGCLKGSVGADAGLYMEEEEERAAAVNAVR 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7440.18621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LI96_9PHAE3.810e-7493.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7440contigEcto-sp13_S_contig7440:2442..7302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1484
Hectar predicted targeting categoryother localisation
Exons7
Cds size717
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7440.18621.1prot_Ecto-sp13_S_contig7440.18621.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7440 2591..6684 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464013.242281-UTR-Ecto-sp13_S_contig7440:2441..25901681464013.242281-UTR-Ecto-sp13_S_contig7440:2441..2590Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7440 2442..2590 +
1681464013.3383768-UTR-Ecto-sp13_S_contig7440:6684..73021681464013.3383768-UTR-Ecto-sp13_S_contig7440:6684..7302Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7440 6685..7302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464013.254171-CDS-Ecto-sp13_S_contig7440:2590..26381681464013.254171-CDS-Ecto-sp13_S_contig7440:2590..2638Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7440 2591..2638 +
1681464013.2712567-CDS-Ecto-sp13_S_contig7440:2794..29341681464013.2712567-CDS-Ecto-sp13_S_contig7440:2794..2934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7440 2795..2934 +
1681464013.2802784-CDS-Ecto-sp13_S_contig7440:4115..42241681464013.2802784-CDS-Ecto-sp13_S_contig7440:4115..4224Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7440 4116..4224 +
1681464013.2892022-CDS-Ecto-sp13_S_contig7440:4645..47411681464013.2892022-CDS-Ecto-sp13_S_contig7440:4645..4741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7440 4646..4741 +
1681464013.2994475-CDS-Ecto-sp13_S_contig7440:5494..55911681464013.2994475-CDS-Ecto-sp13_S_contig7440:5494..5591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7440 5495..5591 +
1681464013.3096879-CDS-Ecto-sp13_S_contig7440:6131..63321681464013.3096879-CDS-Ecto-sp13_S_contig7440:6131..6332Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7440 6132..6332 +
1681464013.3208191-CDS-Ecto-sp13_S_contig7440:6658..66841681464013.3208191-CDS-Ecto-sp13_S_contig7440:6658..6684Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7440 6659..6684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7440.18621.1

>prot_Ecto-sp13_S_contig7440.18621.1 ID=prot_Ecto-sp13_S_contig7440.18621.1|Name=mRNA_Ecto-sp13_S_contig7440.18621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=239bp
MIASRDRPSSSFRSSSDRFRDVASCRKGRCRREENDYRHLGPGKYDGSSM
MELQQFRPKTRGSILGGSGGHRSAVPRAEVNWYPGRKDYPNLGPGVYHQA
SRSFLTKTDAIMFLPGSRRGFHSFLNSGRSKRLMGDAVLFKTARADGEHL
GPGSYDLPPTLSNGCRPSTAPEASLRVKPQQTRPRSRLRRAISSTSSFNR
TGCSKGSVGADAGLYMEEEEERAAAVNAVRALPELHVG*
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mRNA from alignment at Ecto-sp13_S_contig7440:2442..7302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7440.18621.1 ID=mRNA_Ecto-sp13_S_contig7440.18621.1|Name=mRNA_Ecto-sp13_S_contig7440.18621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4861bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7440:2442..7302+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATCGACGTTCACTGCATTAATTGTTGTGTCTCGAGGCCCATGCATCCCT
TGTCGAGGACCGGGCCCCACCACGCCGAAGTAGGTTGAGGGGCGATATCC
AGGGAAAAGTACGGCGTGGCCACGACGCGAGGCGAACGTGTCCCTCAACA
TGATTGCCTCACGTGACAGACCTTCGTCCTCGTTCCGCTCCTCCTCGGTA
TGTGGTTTTTGTGTCATATGTGGTCTAACCCTCTGTTTCTCAAGCCACGA
TGTCCTGTAGTTTGTTTTTCCTTCTCACGAAGAGCACAACAAACAGACAC
GCTGTCGTCGCATGTTAAGAAGTCGGCGTGCTGCGCCTGCTGCTCGCACG
CAGGATCGTTTTCGTGACGTGGCGTCATGTCGCAAGGGCCGCTGCAGGCG
TGAAGAGAACGACTACCGACACCTGGGTCCAGGCAAATACGACGGGTCGT
CAATGATGGAGCTGCAACAGTTCCGCCCGAAGACCAGGGGAAGGTGACCA
CAAACAACTTGAACTGCTGTTTAAATCGCAAAATGAAATGTCTTCAATTC
TGACAACAAATGGTCTTTGCGGCGAAAGGTCGTGCAGTCCAGAAATCCGC
AAGAAGAGCGGATGAACAACCTTGAAGGAAAGCCATCGACATGTATGTAT
GTACGATTGGTGTCACTCAGTGTTGGAATGTGCCCGTCAGGTTCACCGCG
TCGGTCTATCAAGCACCCGGCACAACTACATTCAGAGTTTACTTGAGAGA
ATTTCCAATGACCCTACAGTACACCATCGAGGGACCCCCGTCGTATGCCG
TCTAAGCGACCAACTTGTACTGTAGTTAATCTAGTCTATGTGCTTTTGTC
ATGATGTGCTTATCTGTCGCAGGCACGCATCTGTCAACTGTCAACGGGTA
ACAGAAGCCACACCAGACGCCGAATGCTTGATGTTTTGTGATCGACAAGA
AAACTAACGAAGTAGACTTTGCAATAGGGCCTCTTCTTTCGCACATTTTG
AGGCGAACGGATTGCTGTGGTCACATTGATTTGGTCGATGTATAAAATGT
ACGAAGTCTTTCAAAAGCGCAAGGGACACAGAGTAAACCCTGCTCAATAC
TCGACTCAGATGCGTAAAACAGCGTGAAAGTTGGCGAGCTGATTGGTCGA
AGCCTATTTTCGACGCGGTCACTGGCTACGGTTCTCCGGCTTTATATGTC
ACCCGAATTTCGGGACAGTACCTTGACTTGGCGGGAGACGGAGCCCGTCC
ATGGGCCAATTTTCCCAAGGAATCCCTTTCCGCTCCCGCTAGAGGCCACC
AGAGCATGAACCTTTCTCCTGTCACCGGAAGAAAACACGCGCCATGATTG
GCAAACCCTTTCCCCGACAGCGACATGCCGAGCTGAATAACTGGCGAAAT
ACGACCAACACAAACACGCCACGGACAAGCATTTCAGTTCAGAATACAAG
CAGACCTACTCGTTTGCCTATTCTCGCCTTTGTCCCCTTAGATCTCCCAT
CCGGAATGGCAGGTTACGGAGGGCTTGCAGCACGTGAAGCAGTAGAGCAA
TTATGGAAAGACGTCTCGCCGGTGACACTTGCCCTATGTTGAAAAACATA
GACACCGACACTCCGTAGATTCAACGGCATGGAGGCTAAGCTCGCCCATC
ACACGCCCTACACCCCACAACAAGCATTCTAGGGGGCAGTGGGGGTCACC
GATCCGCAGTTCCGCGGGCAGAGGTCAACTGGTACCCAGGAAGGAAAGAC
TACCCCAACTTGGGACCAGGAGTATACCATCAGGCAAGTCGCTGTCCTGA
TTTCTCCTGATCTCGGCGCCTCAACTAATTCGATTTTTTTTCTATACGTT
CGTCAGGTGGTCGAGACGTTAATAGGTAGCAAGATACTTTTCCCGGCCTG
CCCCTTACGAGCTTAGGAACAGCATTCTAGTTGTTGGATGAGGAGGGCTC
ATCCACATCACCCCCAGTTTATATATATTTCGGCTGACTGTTCGTGTTTG
GAGCGTAGAAGCTGATTCCACTTTTGGGGAGAAAATTTCTACCTGGAAGA
AACAGCAACGTAGGCGTCAACAGCAGCAACTAGAAAGGTCCAGCGTGGAT
TCTTCGATGAAGACAACGTGAACCACGCGCGCACGAGGTTTTCTATGATT
CAGGGCGGATCCCATGGTGGGGGGCAGATTCTAATGGTTCCCTTTGCACG
GCAGGCGTCACGCTCATTCTTGACCAAGACCGACGCGATCATGTTCCTCC
CGGGTAGTAGACGAGGTTTCCACTCCTTTCTCAACAGCGGGAGATCGAAG
GTACGGCGTAGGTGTCTGACGGGGGTGCTTCGCGGATAGTAGCAATGTTC
GTCATGCTGTTGTCGTGCCTTGCACCACAGAAGGACGAAGATCGGTCGGA
TATCAACGCGCAGCGCGGACCCTTGGATATTGCCTCTCGCTCTTGGAGGG
TTACACAAATGAGGGACAGAGAAAATCTAGTTTGTCACGCGTGGGAAGGA
CATGGATGGCAGAGAAATTCTCCAAGTTCGGACTGAGACAACAAACGTGC
GGTATGCAAGAGGCGAACCGCTGTGTAGTTCTTTCGAGCCGGCGACGGAA
ACATTCAGAACTCTGTATTTCCAACTTTCAAGCGTGATCGGAAGGCGTCA
CGAGGCCTGGCAAAGGGACAGCAAACCGCTGTTTCAATAGAAAATATACT
ACAACATCGTACGTCAACTCTTCCCCTGTTCAACAGCTCAGTAGCCAAGC
AAATTAGCGACAGGTGTCAAGCCTTTCCACTTCGACACGTCTATGTCTTC
TTACGAACGTGTAGTTCGGCTTTCAAGGGAATGGTAGAAGACGAGCAGGC
TGTGCGGCAGCTCCTTCGTTCACAAGGTTCCACCGGGGGTCGGGGGTCCG
CTGCCCAACACAACCACAACTTTTCTAGTTCGATTATCACTCTGCTGTGG
GAGTTGTTTTTCTTCCGTGTACAGCCAAAGTCTATCAGGTAGCCCCCGCG
TTCTGAGTTGTTGCTTATCTTAGATGCTCACGTGTACCCCCGTGTCTGAG
CAGAGGCTGATGGGAGACGCTGTTCTGTTTAAAACAGCTAGAGCTGACGG
CGAGCATCTCGGGCCAGGATCGTATGACCTACCTCCCACCCTCAGCAATG
GTGAGGAAGCGAGCTACACTCCGGCACAGAGTAGTGGACCGTAACGCTTG
TACTTGTGCATCAGGGGACATCGGCAGTACCGATGGCCACTATTTCTGCG
CTTCACCCCACCTCTTATTATCCGAGTAGGGCTATGCGTGCCACTTTCGG
TAATAGCATGACAAAGTACAAATATTCATTGGGACAGGCGTGGCACGCCC
TGCCAAACCGGTTGAAACACTCGTTTCACGACTTTCCATCTCTTTGCTTG
ATGTGGTGAACGCTGGTATTGCCGGACACTAATGTTTCGTGTAGCAGACG
CCGGTTTACTATAGATCAACCTTGGCAGACTTGAACGACGTCCTGCGCAG
TCACTTGTTTAAGACTCGCAAATGGGATTCTCATCTGCTAGATTATGCTG
GATCTTTGTCTGGTTAGAACTAGTTTAGCTTCAACTGAAGGGTATCAATG
CCAGATTTACGTTCGCATTTTGAATATATTGCTGTCGCTGTCTTCCCCGT
CTTCGCCTCTACACGACAACCATCCTTTTTTCATGGGTAGGCTGTAGGCC
CAGCACAGCCCCGGAAGCAAGCTTGCGGGTCAAGCCCCAACAAACCCGTC
CCCGTTCCCGACTTCGGCGCGCTATTAGTTCAACGAGCTCTTTCAATAGG
ACAGGATGTTCGAAAGGGAGTGTGGGGGCGGACGCGGGGTTGTACATGGA
GGAAGAGGAGGAGCGTGCGGCGGCCGTCAACGCCGTCCGAGGTGCGTGTA
CTCCTCTCTTTTTCTCTCTCTCTGTTTCTTGAAGTAGCCTCGTGGAAGAA
TCCTGGGTCGTACTTTAAACACCACGATGACATTTGGAATAACAACAGAG
GATGTGGTCTCGCCGGCACGACAGTTCGGGTGTCGACTTTTTGTGTTCGT
GGAAATCATAAATGTTTCAGGTCGTGTTTGTTGTTTCTGATGCTCCATCA
AAGCGGAACGTAACAAAGGTAGATGACGAACAGCTTTTGTTGTACGCCAC
GGCACACCAATACGTCCTTTTCGATTTTCTGTCTCTCCGTGCCGGGTTGT
CTTGGTTCACACCGCAGCTCTCCCAGAACTACATGTAGGTTAACGCGACT
AGACATCAACACAAATCAGCGTGGCCTGACCGAGTTTCGTCACACGGCGG
CTGCGGATGCTGACGCACGCTTACGATCCCATGTCCGCGACACCAGCGAA
AGCTGTGTCGTAGTCGAAGGAACCAAATGCTCAAGGGAGCCGGAGGCAGG
CAACCTCTTCTATCTTGCAAGCATCAGCGCATTGGTCATAGGTCGAGCGG
CGTGGATCCTGGCGTTCGTTTCAGACTCGGACCATCGAATGGACGGGTTG
TTAGGCCGTGTTGTCGCATGCAAGCTGGGAGGTGTGTTTGGAAATGCGGC
TGAAGGGCGGGTCTCGAGCAAGTCTCGTGCTTTCGTGTAGAGAGCCTCAT
TAGACAACGACTTCTCAACGAGCCGCCGTGACTTTCTCCGACCGGATTAC
CTACAGGTCCGAGCGTTTTCGGTCTTGTTGTTTGTGGAATGGCTGGGCTA
GTTGACGAAGTTCTACCTCGAAGGCACACATGAAAGCTGCCGTTATCAAG
CAGGGTTACACCCGAAGTATTTGGCTCGGATGTCTGCTCGTGTGACAAAT
GCTTCTCTCCTCGAGGACAGCACTTGAGACGCTGCTGACTTTTTGCGGGA
GTTTACTCTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7440:2442..7302+

>mRNA_Ecto-sp13_S_contig7440.18621.1 ID=mRNA_Ecto-sp13_S_contig7440.18621.1|Name=mRNA_Ecto-sp13_S_contig7440.18621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7440:2442..7302+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGCCTCACGTGACAGACCTTCGTCCTCGTTCCGCTCCTCCTCGGA
TCGTTTTCGTGACGTGGCGTCATGTCGCAAGGGCCGCTGCAGGCGTGAAG
AGAACGACTACCGACACCTGGGTCCAGGCAAATACGACGGGTCGTCAATG
ATGGAGCTGCAACAGTTCCGCCCGAAGACCAGGGGAAGCATTCTAGGGGG
CAGTGGGGGTCACCGATCCGCAGTTCCGCGGGCAGAGGTCAACTGGTACC
CAGGAAGGAAAGACTACCCCAACTTGGGACCAGGAGTATACCATCAGGCG
TCACGCTCATTCTTGACCAAGACCGACGCGATCATGTTCCTCCCGGGTAG
TAGACGAGGTTTCCACTCCTTTCTCAACAGCGGGAGATCGAAGAGGCTGA
TGGGAGACGCTGTTCTGTTTAAAACAGCTAGAGCTGACGGCGAGCATCTC
GGGCCAGGATCGTATGACCTACCTCCCACCCTCAGCAATGGCTGTAGGCC
CAGCACAGCCCCGGAAGCAAGCTTGCGGGTCAAGCCCCAACAAACCCGTC
CCCGTTCCCGACTTCGGCGCGCTATTAGTTCAACGAGCTCTTTCAATAGG
ACAGGATGTTCGAAAGGGAGTGTGGGGGCGGACGCGGGGTTGTACATGGA
GGAAGAGGAGGAGCGTGCGGCGGCCGTCAACGCCGTCCGAGCTCTCCCAG
AACTACATGTAGGTTAA
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