mRNA_Ecto-sp13_S_contig7439.18618.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7439.18618.1
Unique NamemRNA_Ecto-sp13_S_contig7439.18618.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7439.18618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7439contigEcto-sp13_S_contig7439:1339..5454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size535
Hectar predicted targeting categoryother localisation
Exons3
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464012.8098948-CDS-Ecto-sp13_S_contig7439:1338..15031681464012.8098948-CDS-Ecto-sp13_S_contig7439:1338..1503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7439 1339..1503 +
1681464012.8222373-CDS-Ecto-sp13_S_contig7439:4730..48901681464012.8222373-CDS-Ecto-sp13_S_contig7439:4730..4890Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7439 4731..4890 +
1681464012.83442-CDS-Ecto-sp13_S_contig7439:5245..54541681464012.83442-CDS-Ecto-sp13_S_contig7439:5245..5454Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7439 5246..5454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7439.18618.1prot_Ecto-sp13_S_contig7439.18618.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7439 1339..5454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7439.18618.1

>prot_Ecto-sp13_S_contig7439.18618.1 ID=prot_Ecto-sp13_S_contig7439.18618.1|Name=mRNA_Ecto-sp13_S_contig7439.18618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=178bp
KDKVGETTLDLHVGEHWVKWKRTAGDRKTETIQVSGHQTSIGMYRAHVLQ
RGTVSLHLHPDDQSWHSDRGDEYVSPNVISGISITKAKYAKVRRHSYAKD
TKWDGDLPANKGERPKRDEQPSIEALVGIMYRTGTVERGGPVVVVFDPLG
GWAEACWLMGIPCVIFVAEGPPTSVRDG
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mRNA from alignment at Ecto-sp13_S_contig7439:1339..5454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7439.18618.1 ID=mRNA_Ecto-sp13_S_contig7439.18618.1|Name=mRNA_Ecto-sp13_S_contig7439.18618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4116bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7439:1339..5454+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGACAAGGTAGGCGAAACAACGTTGGACCTGCACGTGGGAGAACATTG
GGTCAAATGGAAGCGGACGGCGGGCGATCGGAAAACCGAAACAATACAAG
TCAGCGGGCACCAAACCTCTATCGGCATGTATCGTGCGCACGTTCTACAG
CGTGGAACCGTTAGTGTGAGTATCCGTAGTCTGCGGTGATTTGCAACAGC
CCACAACAGCCGATCCTGATGATTGAGAAAAATCTTTCAAGGAGAAAAAA
AAAAAGTTCTTCTAGAAGCAAAAATGACCGAAACATTTATTTACCACACA
CAGCAGACAGACGTCGATTAATCTGCAAAGGTAGTACAAGTAAGGAGTAG
TTGTTCCAGCACTTCGCACACACACAATACGATATAATTAACAACAGGTG
GGTCTGTGTGCGGTGAGATCCTGCACTACTGAGAGTCATCCCACGTTTCT
TGTTGCTCGAGGCTCTAAGGTGTTGAGGGAACAGACGGTAAACTACATAC
ATACGTACTTAAATAGTAGGCACTCGCCCGACAGACGCAATAATTTACAA
AGATAGATAGGAGTAGGTGTTCCAGCACTTCCCACACATTATACGATAAC
AACAGGTAGGTCTGTCTGCGGCGAGATCCTGCACTACTGAGAGTCTATCC
CACGTTTCTTGTTGCTCGAGGCTCTAAGCAAGGTGTTGAGGGAACAGACC
GTAAACTACATACATACTTAAATGATAGGCACTCGCACGACAGACGCAAT
AATCTACAGCTTCTCGCTAGCTAGGGTAGGTGTTCCAGCACTTCGCACAC
ATTATACGATAACAACAGGTAGATCTGTCTGCGGCGAGATCCTGCACTAC
TGAGAGTCTATCCCACGTTTCTTGTTGCGCGAGACTCTAAGGTGTTGAGG
AAACAGACGGTAAACGAACTACACTACCAGTTTAATAGCAGTCGCACGCC
AGAACATCCGGGCGGGTTCGTAAGAGAAGTGTAGTAGCATATTCACCCTC
CCTGCTGTTCCAAGGAAGGGTGTATTGAGACTATCTTTTGATTGGGACCG
AGGAGTTTTTGGTGATGATGGTATGTATCGCATGCATATATGTGTACCTT
CCTCCTTTTCAATTTTCTGCTGCTGCCATGCTTCTCGGTTTTACAACCGG
CGCGATACGCAGCAGCAGTGCTGCTGCACGCCATGTTGAAAATATCATGG
TCTTCTTCTTACATGATGATAGCGGCTACACACGTCCTTGATGCTGTATC
TTGGTGTTGTGTTGTTGTTGTTGTTTTCACATTATTAGCTCTATCGTCCA
CAAAAATGGGGAGCCCGAGTGTTCGCAAAACCCGGCACACACGGTGTGTG
TGTGGATCGCTAACGGTGACGTGTGTTGGTGTCTTGTCAACATGCTCAGA
CGTTCAGACGCGGATCCTGTGGAAACTTAAAGAAAAGAAACAGACTTGGG
CCGTCAAACATTCCAGCGTGCCGATCGGCGCGCTGGAATGTTTTGCGCTA
CATCTTGAAATTAGCCCAGACCCGCCAAACATTTCGGCGCGCCGATCGGC
GCGCTGGAATTGTTGGCGCTATATCTTGAAAAAAGACCAGACCCGCCAAA
CATTTCGACCCTCCGATCGGACACCCGAAATGCTGCGGACAAACTTTTCA
CCGCTTTGGGTTTGAAAGGAATGGTTGGTGGCGAGGTCCAGCGATAGTTT
TCGCTGGAATCCAAATTCGGGCTAATTCCTGTTGGAATAATAGTTTCCCA
GAAAGAATCAAAGCAACAGCAAAATGGTCGCAACCGCTTTCAGCGGAAAG
TATTTGTGTGCATCTATGGTTGTTTGGGTTCCCAGAAAACCCTTTTCAGC
CAAATTCGATATCGCCGTATTTCAGGGTGCCGATCCGCGCGTCAGAACTC
CTTACTGCTTCCAATGGGTGTTCGAGATTTGTTCTGTATGTACAGTTTGT
ATTTATTTTTATCTGTATGTATGTATTAATATGCATATGTTACCGGTCAT
CGCCTGACATCTGACATGCATAGATAGTCTTTTCTCGCGGACTAGTTAAT
CTATCTGTTTCTACCTCCTCTCTATGTCTATCACCATACAAACGGAGCCA
CCCTACATGGTTCTCCGTAGAGACACTCTCCTCGCCTTTTTCGATGTGGA
ATCTCCGCCGCATGCGCTTTCTCCCGGTGCAACTGCTTTGAGAATCGCCA
ACCGAGCCCTCCATGGTACTCTGAGCCCATAGACACTCTGTCTCGCCTTC
TTGGGCGGTACCTGGGTCTGCTGGATGCTGTTGTTGTAGTATCTGCATCG
TTACATGTACCACCAATCACAACAGTGAGTGTTGCGCGCGCTTCCTGCCG
GCATAAACTTCCCCGCCCTGCTGCCTCTAGACACATCTCGAACGATGGTT
GGTTGCCGCAACTTGCCGCAGCGGCAACTTTTTCACTTATATTATTGTGG
CACAAAAATCGCCGACCCTCCGTACGACCCTCGCAGCGGGACTGCACAGT
AGTCTTCTTCGGCGCGGTACCTGGGTCTTCCGGATGCTCATGTCGTAACA
TCTGCATCCTTACATGTACCACCAATCACAGTGAGTGTTTCGCGCGCTTC
CTGTCGGCATAAAAGCTCCTCTTGCTGTACTACACACATCGGGAACGATG
GTTGGTTGCTTGTCGAAGTGTGCATCCGGCGTTCGAACCTGGAGCTTACC
CATCTCTACGCCTCACCAAATACTCGCTACGGCCAGAGATCTAACTACCA
CACCAGTGTCCTGATGATCTTATGAATAACGGCCACCCAGTGTTTCATTT
CGTCGCTGTTGGCTAAGCCCGTGCCTGATTCTGTGTAGATTGCCCATTGT
GTTCATATTATTCATATGATATGCATACCACGTTCAGAACTTCGGTGGAT
TTTCAGATTGAATTCCGCATGTACGCCGTGTGTGTGCCATGCGTTCATCT
GTGCTAAGGAGCTAGAGCCTCGAGCAACAGCAAACGTGGGATCGACTCTC
AGTAGTGCATGATCTCACCGCAGACAGACCTGTTGTTATCGTCTTATGTG
TACGAAATGCTGGGACAACTACTCCTTGCTATCTTTGTAGATTCCTCTGT
CTGCTGTGTGTAGTGTGTAGCCCTAACCCTAAGTAGGTAAATGAATGTTT
CGGTCATTTTCGGTTCTAGAAAAAAAAAAAATCTCAAAAAGATTTTTTCT
CGATCATCAGGATCGGCTGTTCCACACAAAATGTCGATTCCCAGCGGGCG
GGGTGCTTTCGACATTACCTCCAAAGTTCATGCGCTCGAGTTGATCCGTG
TCACGGGTGGCAGCATCCCTGCACATTCCGACAGTGACAAACCCTTGTTT
TTGCCAGCTGACCCTTCTTCCACGCCTGATCCCTAAAACCAGTTGCACCT
TCACCCCGACGACCAGTCCTGGCATAGCGACAGGGGCGACGAGTATGTTT
CTCCAAACGTCATTTCGGGAATCTCCATCACGAAAGCGAAATATGCTAAA
GTCCGACGCCACTCCTACGCCAAGGATACTAAGTGGGATGGAGATCTACC
AGGTGTCTGAGTTGGGGCTATCGTTTTCGATCAGTCCGGTTGTCTGACTT
GCGGCCCACAGCAGCGCCATAGCGCATCTTCAAACGAAATGAATCACGTA
ACACACCGGGGTGGTACCCATCGCAACTGCTAGCGTAGAGTGGAACGTAT
AGCGCTTCCAAATCGATCTTCCGGGTATTGTTTAAGTGTGGTGTACAGTA
CCGTTGGAATAGACTCCGTCGTACCCATCCCAGCACCTGAAGTGCTTTGT
TTGCGCAGCTGTTACCATGTAGCACTGCCTCTCGTTTGAGGATGTGAGTG
AACTCACGTCGTTCGGTGATGCAATCTCATCGTGCTGATCTGCTGGTTTC
CCTGCAGCTAACAAAGGAGAAAGACCGAAGAGAGATGAGCAGCCAAGCAT
CGAAGCCTTAGTTGGCATAATGTACCGCACCGGAACCGTTGAACGAGGAG
GCCCGGTCGTCGTGGTGTTCGACCCTTTGGGAGGATGGGCCGAAGCCTGC
TGGCTGATGGGTATACCCTGCGTTATATTTGTAGCAGAAGGGCCTCCCAC
AAGTGTGAGAGATGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7439:1339..5454+

>mRNA_Ecto-sp13_S_contig7439.18618.1 ID=mRNA_Ecto-sp13_S_contig7439.18618.1|Name=mRNA_Ecto-sp13_S_contig7439.18618.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7439:1339..5454+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGACAAGGTAGGCGAAACAACGTTGGACCTGCACGTGGGAGAACATTG
GGTCAAATGGAAGCGGACGGCGGGCGATCGGAAAACCGAAACAATACAAG
TCAGCGGGCACCAAACCTCTATCGGCATGTATCGTGCGCACGTTCTACAG
CGTGGAACCGTTAGTTTGCACCTTCACCCCGACGACCAGTCCTGGCATAG
CGACAGGGGCGACGAGTATGTTTCTCCAAACGTCATTTCGGGAATCTCCA
TCACGAAAGCGAAATATGCTAAAGTCCGACGCCACTCCTACGCCAAGGAT
ACTAAGTGGGATGGAGATCTACCAGCTAACAAAGGAGAAAGACCGAAGAG
AGATGAGCAGCCAAGCATCGAAGCCTTAGTTGGCATAATGTACCGCACCG
GAACCGTTGAACGAGGAGGCCCGGTCGTCGTGGTGTTCGACCCTTTGGGA
GGATGGGCCGAAGCCTGCTGGCTGATGGGTATACCCTGCGTTATATTTGT
AGCAGAAGGGCCTCCCACAAGTGTGAGAGATGGC
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