mRNA_Ecto-sp13_S_contig7399.18573.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7399.18573.1
Unique NamemRNA_Ecto-sp13_S_contig7399.18573.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7399.18573.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 447 bits (1149), Expect = 4.020e-146
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1 
Query:    1 VAGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEA 666
            VAGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEA
Sbjct:  699 VAGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEA 920
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BLAST of mRNA_Ecto-sp13_S_contig7399.18573.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 402 bits (1034), Expect = 2.080e-135
Identity = 198/210 (94.29%), Postives = 204/210 (97.14%), Query Frame = 1 
Query:   37 AMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEA 666
            A   VSKLILKSHGACRAYLARLRD FFKVNAEDLAAVEAALRQAGMSKEEVEAKK KDWV FLKRCRRLIPRPAELL+RFD+VNNLYGGL+DKKTKQPLFRAEALEAIKRLRVHIMNDCCSD+PNEALYFEAGKDAETLCPLFRCIRGTNDLEG+HLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQP+LEA
Sbjct:  313 AAGEVSKLILKSHGACRAYLARLRDEFFKVNAEDLAAVEAALRQAGMSKEEVEAKKGKDWVLFLKRCRRLIPRPAELLKRFDVVNNLYGGLLDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDAPNEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPILEA 522
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BLAST of mRNA_Ecto-sp13_S_contig7399.18573.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 4.300e-96
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1 
Query:  241 RLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEA 666
            RLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEA
Sbjct:  206 RLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEA 347
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BLAST of mRNA_Ecto-sp13_S_contig7399.18573.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 236 bits (601), Expect = 5.720e-70
Identity = 117/219 (53.42%), Postives = 156/219 (71.23%), Query Frame = 1 
Query:   10 LVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLE 663
            L V+LD FHAM R++K +LKSHGA + ++ARLRDAFF ++ +DL  V AAL+ AG+S +E+EAKK  DW +FLK C RLIP   ELL+R+D V N +  ++D KT +PLFR+   + ++ LR HI N C SD P+  LYF  G+ ++ L P++RC RGTN  EGYH HMR LL  +  SP L HLLLLE+N+RWN+R ++KNRGL    GGFY Q +L+
Sbjct:  433 LKVRLDCFHAMNRINKTLLKSHGAYKPFMARLRDAFFLISKDDLDLVVAALKTAGLSDDEIEAKKDYDWAFFLKYCHRLIPCKEELLKRYDFVCNTFQDILDSKTNEPLFRSNTKKEVRNLRKHIQNGCLSDVPDIPLYFLEGRTSQGL-PIYRCARGTNSNEGYHRHMRKLLHHYASSPMLLHLLLLEFNFRWNIRMAVKNRGLPSEYGGFYSQSLLD 650
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BLAST of mRNA_Ecto-sp13_S_contig7399.18573.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 1.430e-59
Identity = 103/217 (47.47%), Postives = 149/217 (68.66%), Query Frame = 1 
Query:   16 VKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLE 663
            V+LD FHA+ R+S+ I K HGA R  +ARLRDA F VN +D+  +E  L + GMS  +V+  K +DW YFL++CRRL+P P+ELL+RFD V   +G  +D  +K+ L R ++++A+  LR HI+  C SD    A+Y+  GK  + L   +RC+RGTND+EGYH ++R LL ++C SP LA  +LLE+N+RWNL+  +KNRGL   +G  Y+Q ++E
Sbjct:  545 VRLDLFHALNRLSRTIKKGHGAFRPIMARLRDACFLVNRDDVLQIEKVLERRGMSPAQVQQAKDQDWSYFLRKCRRLVPPPSELLKRFDKVVQEFGNCVDNISKEVLLRPKSMKAVSLLRKHIVAGCLSDPDGVAMYYAVGKTTDGLVN-YRCVRGTNDVEGYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVE 760
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BLAST of mRNA_Ecto-sp13_S_contig7399.18573.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 9.420e-59
Identity = 109/224 (48.66%), Postives = 150/224 (66.96%), Query Frame = 1 
Query:    4 AGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDL---AAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLE 663
            + L V+LD FHA+QRVSKL  KSHGA + ++ARLRDA F VN +D+   +AVE AL   GM+ E V   K K+W +F++ CRRL+P    LLERF+LV   +  ++D K+ + L R  A +A++ LR HI + C SD     LY+ +GK++  +    RC+RGTN  EGYH ++R LL  +C SP LAH +LLE+NYRWN+R ++KNRGL   VG F+DQ  +E
Sbjct:  174 SALKVRLDIFHALQRVSKLCKKSHGAFKPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTSGKNSAGITTR-RCVRGTNCTEGYHRYVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIE 396
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BLAST of mRNA_Ecto-sp13_S_contig7399.18573.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 5.740e-57
Identity = 106/231 (45.89%), Postives = 151/231 (65.37%), Query Frame = 1 
Query:   16 VKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDL-------------AAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEA 666
            V+LD FH + R+S++  KSHGA + ++ARLRDA F VN +D+              +VE  L   GM  EEV+    ++W +FL+  RRL+PR   LL+RFD V   +GG +D  + + L R +A++A+++LR HI NDC SD    A+YF  GK+   L   +RC+RGTND+EGYH ++R LL ++C SP LA  +LLE+NYRWNLR  +KNRGL  A+GG Y+Q ++E+
Sbjct:  488 VRLDPFHTLNRISRMTKKSHGAFKPFMARLRDACFLVNRDDVYQASLKPFGWIWERSVEMTLEARGMKPEEVQQLTEQNWSFFLRSSRRLVPRRDVLLKRFDRVIEEFGGCVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPDGMAMYFAIGKNKHGLTD-YRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVES 717
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BLAST of mRNA_Ecto-sp13_S_contig7399.18573.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 7.780e-56
Identity = 109/224 (48.66%), Postives = 145/224 (64.73%), Query Frame = 1 
Query:    4 AGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDL---AAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMR-LLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLE 663
            + L V+LD FHA+QRVSKL  KSHGA R ++ARLRDA F VN +D+   +AVE AL   GM+ E V   K K+W +F++ CRRL+P    LLERF+LV   +  ++D K+ + L R  A +A++ LR HI + C SD     LY+       T     RC+RGTN  EGYH ++R LL  +C SP LAH +LLE+NYRWN+R ++KNRGL   VG F+DQ  +E
Sbjct:  174 SALKVRLDIFHALQRVSKLCKKSHGAFRPFMARLRDACFIVNLDDIKEASAVEQALAGKGMTPEAVVEYKDKNWTFFVRNCRRLVPEQKRLLERFNLVIRQFQDVVDAKSGETLLRPCARQAVELLRKHIESGCLSDPERVPLYYTKSAGITTR----RCVRGTNCTEGYHRYLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIE 393
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BLAST of mRNA_Ecto-sp13_S_contig7399.18573.1 vs. uniprot
Match: D7FIV1_ECTSI (Similar to Werner syndrome protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV1_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 3.030e-46
Identity = 94/219 (42.92%), Postives = 130/219 (59.36%), Query Frame = 1 
Query:    7 GLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLE 663
             L V+LD FHA+QR+S+L  KSHGA + ++ARLRDA F VN +D+  VE AL   GM+ E V   K K+W YFL+ CRRL+P    LLERF+ V N +  ++D K+ + L R +A++A+ +LR HI +DC SD     LY+  G++A  +    RC+RGTN  E                         +NYRWN+R ++KNRGL   VG F+DQ  +E
Sbjct:  497 ALQVRLDIFHALQRISRLCKKSHGAFKPFMARLRDACFIVNQDDIKEVEQALGSKGMTPEAVAEYKDKNWTYFLRNCRRLVPERQRLLERFNSVINQFCNVVDAKSGEVLIRPKAMQAVDQLRKHIESDCLSDPHGVPLYYTTGQNAAGITTR-RCVRGTNYTE-------------------------FNYRWNIRMAVKNRGLPREVGEFFDQFEIE 689
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BLAST of mRNA_Ecto-sp13_S_contig7399.18573.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 4.320e-34
Identity = 71/165 (43.03%), Postives = 103/165 (62.42%), Query Frame = 1 
Query:  148 VEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGF 642
            VE  L   GM+  + E  K  +W +FLKRCRRL+P P+ELL+ FD V   +G  +D  +K+ L R ++++A++ LR HI+  C SD    A+Y+  GK  + L   +RC+RGTND+EGYHL      ++  SP LA  +LLE+N+RWNL+  +KNR  D +   F
Sbjct:  837 VEKVLECRGMTPAQAEQVKDHNWSFFLKRCRRLVPPPSELLKPFDKVVEEFGNCVDNVSKEALLRPKSMKAVRLLRKHIVAGCLSDPDGVAMYYAIGKTTDGLVR-YRCVRGTNDVEGYHL-----ASYSASPALAQSVLLEFNFRWNLKMMVKNRDWDPSFPVF 995
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7399.18573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE4.020e-146100.003'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE2.080e-13594.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD89_9PHAE4.300e-96100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y2A9B5_9FUNG5.720e-7053.423'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7G3Q9_ECTSI1.430e-5947.473'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JPK9_9PHAE9.420e-5948.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRJ6_9PHAE5.740e-5745.893'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KLP1_9PHAE7.780e-5648.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV1_ECTSI3.030e-4642.92Similar to Werner syndrome protein n=1 Tax=Ectocar... [more]
A0A6H5K4M0_9PHAE4.320e-3443.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7399contigEcto-sp13_S_contig7399:771..1605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score215.3
Seed ortholog evalue2.9e-53
Seed eggNOG ortholog2880.D7G3Q9
Preferred nameWRN
Model size667
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons2
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
Cds size666
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464008.2488072-CDS-Ecto-sp13_S_contig7399:771..11951681464008.2488072-CDS-Ecto-sp13_S_contig7399:771..1195Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7399 772..1195 -
1681464008.2667344-CDS-Ecto-sp13_S_contig7399:1363..16051681464008.2667344-CDS-Ecto-sp13_S_contig7399:1363..1605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7399 1364..1605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7399.18573.1prot_Ecto-sp13_S_contig7399.18573.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7399 772..1605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7399.18573.1

>prot_Ecto-sp13_S_contig7399.18573.1 ID=prot_Ecto-sp13_S_contig7399.18573.1|Name=mRNA_Ecto-sp13_S_contig7399.18573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=222bp
VAGLVVKLDTFHAMQRVSKLILKSHGACRAYLARLRDAFFKVNAEDLAAV
EAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLY
GGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAE
TLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQ
SMKNRGLDEAVGGFYDQPMLEA
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mRNA from alignment at Ecto-sp13_S_contig7399:771..1605-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7399.18573.1 ID=mRNA_Ecto-sp13_S_contig7399.18573.1|Name=mRNA_Ecto-sp13_S_contig7399.18573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=835bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7399:771..1605- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCTGGGCTAGTTGTCAAGCTCGACACTTTCCACGCGATGCAGCGGGT
GAGTAAGCTCATCCTCAAGAGCCACGGCGCGTGTCGTGCGTACTTGGCGC
GGTTGAGAGACGCTTTTTTCAAGGTGAACGCGGAAGATCTCGCGGCGGTG
GAAGCAGCCCTCCGCCAAGCGGGCATGAGCAAGGAAGAGGTGGAAGCTAA
AAAGGCCAAGGATTGGGTTTACTTCCTCAAGCGATGCCGAAGGTGAGGAA
CATCGGCGCCCGCAGTATTTCTGCCGCCAACTGTCATCGTGCGGGGTGCA
GTGCGTTGTTGATTTTCGTAAATTAAGAGGGCGTAAATGTTGCGTTTGAA
CACCTAGGCATCGGTGTTGACCTATCGGTTCGTTGACCTCGCTGTACTTG
CTGCCGGCAGGTTGATCCCACGGCCAGCAGAGCTGCTCGAGCGTTTTGAC
TTGGTCAACAACCTGTATGGCGGGCTTATTGACAAGAAAACGAAGCAGCC
ACTGTTTCGAGCGGAAGCACTGGAGGCTATCAAGCGTCTTCGAGTACACA
TCATGAACGATTGCTGTAGTGACTCCCCGAACGAGGCGCTGTACTTCGAG
GCGGGGAAGGATGCTGAGACTCTCTGTCCGTTGTTTCGCTGCATTAGAGG
TACCAACGACCTAGAGGGGTACCACCTGCACATGCGCTTGCTGGTCGCGT
GGTGTATTTCTCCCAGGCTTGCCCATCTTCTTCTCCTCGAGTACAACTAC
AGGTGGAACTTACGCCAGAGTATGAAGAACCGTGGTCTCGACGAGGCTGT
GGGGGGGTTCTACGACCAACCAATGCTTGAGGCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7399:771..1605-

>mRNA_Ecto-sp13_S_contig7399.18573.1 ID=mRNA_Ecto-sp13_S_contig7399.18573.1|Name=mRNA_Ecto-sp13_S_contig7399.18573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=666bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7399:771..1605- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCTGGGCTAGTTGTCAAGCTCGACACTTTCCACGCGATGCAGCGGGT
GAGTAAGCTCATCCTCAAGAGCCACGGCGCGTGTCGTGCGTACTTGGCGC
GGTTGAGAGACGCTTTTTTCAAGGTGAACGCGGAAGATCTCGCGGCGGTG
GAAGCAGCCCTCCGCCAAGCGGGCATGAGCAAGGAAGAGGTGGAAGCTAA
AAAGGCCAAGGATTGGGTTTACTTCCTCAAGCGATGCCGAAGGTTGATCC
CACGGCCAGCAGAGCTGCTCGAGCGTTTTGACTTGGTCAACAACCTGTAT
GGCGGGCTTATTGACAAGAAAACGAAGCAGCCACTGTTTCGAGCGGAAGC
ACTGGAGGCTATCAAGCGTCTTCGAGTACACATCATGAACGATTGCTGTA
GTGACTCCCCGAACGAGGCGCTGTACTTCGAGGCGGGGAAGGATGCTGAG
ACTCTCTGTCCGTTGTTTCGCTGCATTAGAGGTACCAACGACCTAGAGGG
GTACCACCTGCACATGCGCTTGCTGGTCGCGTGGTGTATTTCTCCCAGGC
TTGCCCATCTTCTTCTCCTCGAGTACAACTACAGGTGGAACTTACGCCAG
AGTATGAAGAACCGTGGTCTCGACGAGGCTGTGGGGGGGTTCTACGACCA
ACCAATGCTTGAGGCC
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