mRNA_Ecto-sp13_S_contig7397.18571.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7397.18571.1 vs. uniprot
Match: A0A6H5L0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D2_9PHAE) HSP 1 Score: 940 bits (2429), Expect = 0.000e+0 Identity = 551/640 (86.09%), Postives = 571/640 (89.22%), Query Frame = 1
Query: 328 PHKSGPGRQDAGXXXXXXXATTTTNDAHDDGSLSAVTGVSYTPSAPARRVMIRGLPEQVDKARDALVALVLGREDGEVALGEEGAAALGTDSWRKIQDSSERVTITPDRSRCSLRVAGPPAAVEACRRELYTMLADAFRGEFVAVPIPREALCEVATPLRLADAAAXXXXXXXSSPKTGDGKQTAAAAGQIAEVLGPIGVASAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVDEITTALSKWSALTVTARVEEWMQPELFGKQRKAIKKLSQSMGGIVLNVVDGVCSGRAASEEEARDATRKLEERVNELRARRAVVRVPQEVVSQLTGRQGCSIDKLRERTLATICIDEGVGGKDVIIYGDPAAVAAAKLEVEAMARGPSKSGPAAQAPSDRQSQDGSVPDAAGDASPLLSPSPGEGVPQTGTPXXXXXXXXXXXXQHAGNAAGGRGQDVDLADRRECEVTTGSVKAVVAVPKQDGEGYRLGVEDQERVAEEEPPVVTPPGGSGDARQAPGPSASGSTGRPLGSRDASSXXXXXXXXXXXXXXXXXGSTGRGSFETKARDNPRGGGVPTGVAAEPAESPPPAVVSGSNH-PAKDSSASSYRGRLGERDRRVSAATESEAERLLASLLLVDNAAA 2244
P+KSGPGRQDAG A TT +DAHDDGSLSAVTGVSYT SAPAR VMIRGLP QVDKARDALVALVLG EDGEVALGEEGAAALG DSWRKIQDSS RVTITPD+SRCSLRV+GPPAAVEACR+ELYTMLADA RG+FVAVPIPREAL EVAT LRLADAA XXXXXXXSSPKTGDGK+TAAAAGQIAEVLGP G+ASAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVDEI TALS WSALTVTA VEEWM+PEL GKQRKAIKKLSQSMGG+VLNVVDGVC GRAASEEEARDATRKLEERVNELRARRAVVRVP EVVSQLTGR+GCSIDKL+ERT ATICI+EGVGGK+ II GDPAAVAAAKLEVEAMARGPSKSGPA QAP++RQSQDGSVPDAAGD SPLLSPSPGEGVPQTGTP QHAGN AGG GQDVDLADRREC+ T GSVK VAVPK DGEGYR GVEDQERV EE+P VVTPPGG GDARQAPGPSASGSTGRPLG+RDAS XXXXXXXXXXXXXXXXX + G FET ARDNPR GG P GVAAEPA SP PAVVS SNH PAK SSASSYRGRLGERDRRVSAATESEAERLLASLLLVDNAAA
Sbjct: 1011 PYKSGPGRQDAGGRGAGVGAITTADDAHDDGSLSAVTGVSYTSSAPARMVMIRGLPGQVDKARDALVALVLGWEDGEVALGEEGAAALGADSWRKIQDSSGRVTITPDKSRCSLRVSGPPAAVEACRKELYTMLADASRGKFVAVPIPREALHEVATSLRLADAAXXXXXXXXSSPKTGDGKRTAAAAGQIAEVLGPTGIASAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVDEINTALSMWSALTVTAEVEEWMEPELLGKQRKAIKKLSQSMGGVVLNVVDGVCCGRAASEEEARDATRKLEERVNELRARRAVVRVPPEVVSQLTGRRGCSIDKLKERTRATICIEEGVGGKEFIICGDPAAVAAAKLEVEAMARGPSKSGPATQAPNNRQSQDGSVPDAAGDPSPLLSPSPGEGVPQTGTPSPLPPSRQNQNQQHAGNTAGGGGQDVDLADRRECDATAGSVKTAVAVPKLDGEGYRRGVEDQERVGEEQPLVVTPPGGGGDARQAPGPSASGSTGRPLGARDASXXXXXXXXXXXXXXXXXXXAGSEG-FETNARDNPRSGGDPAGVAAEPAGSPAPAVVSSSNHYPAKGSSASSYRGRLGERDRRVSAATESEAERLLASLLLVDNAAA 1649
BLAST of mRNA_Ecto-sp13_S_contig7397.18571.1 vs. uniprot
Match: D7FTS7_ECTSI (KH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS7_ECTSI) HSP 1 Score: 774 bits (1998), Expect = 6.880e-268 Identity = 467/639 (73.08%), Postives = 483/639 (75.59%), Query Frame = 1
Query: 328 PHKSGPGRQDAGXXXXXXXATTTTNDAHDDGSLSAVTGVSYTPSAPARRVMIRGLPEQVDKARDALVALVLGREDGEVALGEEGAAALGTDSWRKIQDSSERVTITPDRSRCSLRVAGPPAAVEACRRELYTMLADAFRGEFVAVPIPREALCEVATPLRLADAAAXXXXXXXSSPKTGDGKQTAAAAGQIAEVLGPIGVASAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVDEITTALSKWSALTVTARVEEWMQPELFGKQRKAIKKLSQSMGGIVLNVVDGVCSGRAASEEEARDATRKLEERVNELRARRAVVRVPQEVVSQLTGRQGCSIDKLRERTLATICIDEGVGGKDVIIYGDPAAVAAAKLEVEAMARGPSKSGPAAQAPSDRQSQDGSVPDAAGDASPLLSPSPGEGVPQTGTPXXXXXXXXXXXXQHAGNAAGGRGQDVDLADRRECEVTTGSVKAVVAVPKQDGEGYRLGVEDQERVAEEEPPVVTPPGGSGDARQAPGPSASGSTGRPLGSRDASSXXXXXXXXXXXXXXXXXGSTGRGSFETKARDNPRGGGVPTGVAAEPAESPPPAVVSGSNHPAKDSSASSYRGRLGERDRRVSAATESEAERLLASLLLVDNAAA 2244
PHKSGPGRQDAG ATTT +D HDDGSLSAVTGVSYT SAPARRVMIRGLP VDKARDALVALVLGREDGEVALGEE AAALG DSWRKIQDSSERVTITPDRSRCSLRV+GPPAAVEACRRELYTMLADAFRGEFVAVPIPREAL EVATPLRLADAAAXXXXXXXSSP+TGDGK+TAAAAGQIAEVLGP+GVA+AACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAV EI TALSKWSAL V A VEEWM+PELFGKQRKAIKKLSQSMGG+VLNVVDGVCSGRAASEEEARDATRKLEERV+ELRARRAVVRVP EVV++LTGR GCSIDK++ERT ATI I EGVGG +VII GDP+AVAAA+ EVEAMARGPSKS PAAQAP DRQS DG VPDAAGD SPLL PSPGEGVPQTGTP XXXXXXX HAGNAAGG GQDVDLADRR E T GSVK AEPA SPPPAVV GSNHPAK SSASSYRGRLGERD RVSAATESEAERLLASLLLVDN AA
Sbjct: 320 PHKSGPGRQDAGGRGAGVGATTTADDTHDDGSLSAVTGVSYTSSAPARRVMIRGLPGLVDKARDALVALVLGREDGEVALGEEAAAALGADSWRKIQDSSERVTITPDRSRCSLRVSGPPAAVEACRRELYTMLADAFRGEFVAVPIPREALHEVATPLRLADAAAXXXXXXXSSPRTGDGKRTAAAAGQIAEVLGPMGVAAAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVGEINTALSKWSALAVAAEVEEWMEPELFGKQRKAIKKLSQSMGGVVLNVVDGVCSGRAASEEEARDATRKLEERVSELRARRAVVRVPPEVVTRLTGRGGCSIDKIKERTRATIRIGEGVGGNEVIICGDPSAVAAARREVEAMARGPSKSSPAAQAPKDRQSPDGGVPDAAGDPSPLLPPSPGEGVPQTGTPSXXXXXXXNQNQLHAGNAAGGGGQDVDLADRRGGEATAGSVKT---------------------------------------------------------------------------------------------------------AEPAGSPPPAVVGGSNHPAKGSSASSYRGRLGERDTRVSAATESEAERLLASLLLVDNVAA 853
BLAST of mRNA_Ecto-sp13_S_contig7397.18571.1 vs. uniprot
Match: D8LHP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP8_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 6.980e-16 Identity = 87/276 (31.52%), Postives = 128/276 (46.38%), Query Frame = 1
Query: 475 VMIRGLPEQVDKARDALVALVLGREDGEVALGEEGAAALGTDSWRKIQD--SSERVTITPDRSRCSLRVAGPPAAVEACRRELYTMLADAFRGEFVAVPIPREALCEVATPLRLADAAAXXXXXXXSSPKTGDGKQTAAAAGQIAEVLGPIGVASAACGWRGEGNVQLLADWPCSCVRVRGEAAAVSVAVDEITTALSKWSALTVTARVEEWMQPELFGKQRKAIKKLSQSMG-GIVLNVVDGVCSGRAASEEEARDATR--KLEERVNELRARRA 1287
++I G V +A+DA+ +LV G EV +G W + ++ D R + V G P VE R+E LA F G+F+AVP+PR AL ++A L AA S DG+ P G A G V+L ADWP SCVR+RGE A V A + AL+ W+ L V+ V+ + L + + + +S +MG +++ GV GRA +E+EA++A R KL+ +V L RR+
Sbjct: 305 ILIWGPAGVVGEAKDAVCSLVSGSASAEVVVGVGRIGRRDRGFWVNCETMPGGGGASLEVDHKRGVVVVRGLPEEVEEGRKEFQDKLASLFPGDFLAVPMPRAALKDLADAQGLTRAA--------SQAGVVDGRDER-----------PDGCDEA-------GGVELWADWPFSCVRLRGEPATVRRAAKALYAALAVWNTLEVSVTVDRAIVTRLLSRSGRILAGISSNMGITLLVEREKGVLRGRARNEDEAKEANRVLKLKLKVAALAQRRS 554 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7397.18571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7397.18571.1 >prot_Ecto-sp13_S_contig7397.18571.1 ID=prot_Ecto-sp13_S_contig7397.18571.1|Name=mRNA_Ecto-sp13_S_contig7397.18571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=589bp MIRGLPEQVDKARDALVALVLGREDGEVALGEEGAAALGTDSWRKIQDSSback to top mRNA from alignment at Ecto-sp13_S_contig7397:3..4364- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7397.18571.1 ID=mRNA_Ecto-sp13_S_contig7397.18571.1|Name=mRNA_Ecto-sp13_S_contig7397.18571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4362bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7397:3..4364- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7397:3..4364- >mRNA_Ecto-sp13_S_contig7397.18571.1 ID=mRNA_Ecto-sp13_S_contig7397.18571.1|Name=mRNA_Ecto-sp13_S_contig7397.18571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1767bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7397:3..4364- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |