mRNA_Ecto-sp13_S_contig7393.18570.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7393.18570.1
Unique NamemRNA_Ecto-sp13_S_contig7393.18570.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7393.18570.1 vs. uniprot
Match: D7FK73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK73_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 2.800e-112
Identity = 191/198 (96.46%), Postives = 196/198 (98.99%), Query Frame = 1 
Query:   10 QGDGFIKIGQAAKACICYSQQISNLGMQSDRMGLSALGVAHARLAKAQRACDRVDLAAVSFERALELSIEGKHLPGIVDALEGLGRCCLENCQYRDAVSLFKRALARNVEIRNLPQDARLFRLLEEGHRRMVDEEHAKVYADRAESIEKEMESKLSKAKASLEDSTTRLVGRTANSAKVIRLERVTAGYVAMCSRRAY 603
            QGDGFIKIGQAAKACICYS+QISNL +QSDRMGL+ALGVAHARLAKAQ+ACDRVDLAAVSFERALELS EGKHLPGIVDALEGLGRCCLENCQYRDAVSLFKRALARNVEIRNLPQDARLFRLLEEGHRRMVD+EHAKVYADRAESIEKEMESKLSKAKASLEDSTTRLVGRTANSAKVIRLERVTAGYVAMCSRRAY
Sbjct:  840 QGDGFIKIGQAAKACICYSRQISNLDVQSDRMGLTALGVAHARLAKAQKACDRVDLAAVSFERALELSTEGKHLPGIVDALEGLGRCCLENCQYRDAVSLFKRALARNVEIRNLPQDARLFRLLEEGHRRMVDDEHAKVYADRAESIEKEMESKLSKAKASLEDSTTRLVGRTANSAKVIRLERVTAGYVAMCSRRAY 1037
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BLAST of mRNA_Ecto-sp13_S_contig7393.18570.1 vs. uniprot
Match: A0A2R5GVW7_9STRA (F-box/WD repeat-containing protein 7 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVW7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.610e-9
Identity = 48/146 (32.88%), Postives = 84/146 (57.53%), Query Frame = 1 
Query:  139 LAKAQRACDRVDLAAVSFERALELSIEGK--HLPGIVDALEGLGRCCLENCQYRDAVSLFKRALARNVEIRNLPQDARLFRLLEEGHRRMVDEEHAKVYADRAESIEKEMESKLSKAKASLEDSTTRLVGRTANSAKVIRLERVTA 570
            +A+  +A  +VD A V+F+R   L+ E K   L G+  AL G+ +C +    ++ A+    RAL    ++ + P  A   R L+  +  M DEE++K + +RA+++E E+ESK++   A + ++  +LV  TA  ++VI LE V+A
Sbjct: 1069 IAQCMQALHKVDRAMVNFDRMRSLACEAKSHRLEGL--ALLGISQCNMVRSAHKAAIDYADRALFIFEDLNDRPHQALACRQLQRAYTDMYDEENSKAFEERADTLELELESKVTNTFAKIAEAERKLVSVTAERSQVIELEVVSA 1212
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7393.18570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK73_ECTSI2.800e-11296.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5GVW7_9STRA2.610e-932.88F-box/WD repeat-containing protein 7 n=1 Tax=Honda... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7393contigEcto-sp13_S_contig7393:612..3376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score365.9
Seed ortholog evalue1.2e-98
Seed eggNOG ortholog2880.D7FK73
Model size604
KEGG koko:K10260,ko:K10265,ko:K10266
KEGG Pathwayko04120,map04120
KEGG ModuleM00387
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
Cds size603
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7393.18570.1prot_Ecto-sp13_S_contig7393.18570.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7393 612..3376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464007.9938889-CDS-Ecto-sp13_S_contig7393:611..6831681464007.9938889-CDS-Ecto-sp13_S_contig7393:611..683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7393 612..683 +
1681464008.0072968-CDS-Ecto-sp13_S_contig7393:1058..11831681464008.0072968-CDS-Ecto-sp13_S_contig7393:1058..1183Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7393 1059..1183 +
1681464008.018028-CDS-Ecto-sp13_S_contig7393:1756..18521681464008.018028-CDS-Ecto-sp13_S_contig7393:1756..1852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7393 1757..1852 +
1681464008.0290506-CDS-Ecto-sp13_S_contig7393:2213..23311681464008.0290506-CDS-Ecto-sp13_S_contig7393:2213..2331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7393 2214..2331 +
1681464008.0394132-CDS-Ecto-sp13_S_contig7393:2602..27341681464008.0394132-CDS-Ecto-sp13_S_contig7393:2602..2734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7393 2603..2734 +
1681464008.0499141-CDS-Ecto-sp13_S_contig7393:3316..33761681464008.0499141-CDS-Ecto-sp13_S_contig7393:3316..3376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7393 3317..3376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7393.18570.1

>prot_Ecto-sp13_S_contig7393.18570.1 ID=prot_Ecto-sp13_S_contig7393.18570.1|Name=mRNA_Ecto-sp13_S_contig7393.18570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
AHLQGDGFIKIGQAAKACICYSQQISNLGMQSDRMGLSALGVAHARLAKA
QRACDRVDLAAVSFERALELSIEGKHLPGIVDALEGLGRCCLENCQYRDA
VSLFKRALARNVEIRNLPQDARLFRLLEEGHRRMVDEEHAKVYADRAESI
EKEMESKLSKAKASLEDSTTRLVGRTANSAKVIRLERVTAGYVAMCSRRA
Y
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mRNA from alignment at Ecto-sp13_S_contig7393:612..3376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7393.18570.1 ID=mRNA_Ecto-sp13_S_contig7393.18570.1|Name=mRNA_Ecto-sp13_S_contig7393.18570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7393:612..3376+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACATCTTCAGGGCGATGGGTTCATCAAGATTGGCCAGGCAGCGAAGGC
TTGCATCTGCTACTCTCAGCAGGTGCGAAGCAACCAACACGATCGATCGT
GGAGGGATATGTGGTGCTAGAACTGTAGCCAACCCTTCATGATGTCCAAT
CGTTTTTCTCTGCATCTCGTGTCGGAACCTCAGCCATTGGCTTCTTTTGA
ATACCTCGCTTTGCCAAGTCATCTGCTCTTGAGCCGGCCAATTGTATTTC
TTCAAAGGATCGGGATCCTGCATGTAGAGATTATCCTAAAACCCTCTTGA
TCTAGACTAGTAGTTGATTCTTGCCCCCGCCAGACATATGAGTCATTCGG
AGAGAAACAGACGTGGAACTCAACTATCCCTTCCCCCCACCTGCATGTGG
TCCGGTGGTGCATGCACGCTTACACCCGCGCGTTCAACCCACAACAGATT
TCAAACCTTGGCATGCAGTCCGATCGAATGGGCCTCAGTGCTCTCGGCGT
GGCCCACGCTAGGCTAGCAAAGGCTCAAAGAGCGTGCGATCGTGTCGACC
TCGCGGCCGTGAGCTTCGAAAGGTACGTGCAGTACGCTTGCTTGCGTCCG
TCGTACGGGACGTTCGTTTTGACAAGCATACGCCACGCAACAAGCTTTTT
TGGTCTTTTTGTCGGTCCGACGGCTCATGTACAATTGTGTCCACTGGGTA
CCCTTGTACGCAGATCTAGACGTAAGCTTATGGAACAACCTGAACACGTA
AACATATTGCCTGTGTTCGCACGCCTCACTGCTACTGTAGACAAAAATAG
ACTGCTCCCTCTCGAACATAAAAAGCGACCAACCTTGTCAGCATGAACAA
GCAAAAAAATGTGGTAGATGCTGCTCCAGGGTACAACTCTGAAAATAGAA
TGCAGGAGCAATGATGTCACACGAAACCTTCGATATGGCTGCCTACACAT
GTGTCTCAGGACGTACTCAAAAATGGAAGCGAATCACTGGTGGAGGAATT
CGGCCTCAAGGGGGTCCAAGTTCCATATGAAGCGAAGATTAACGCGTAAA
CAACCCACGGTGACGTGTCAGGCGCGTTGATAGAGAAAAGACGAACATCC
AGAAGTCCCCTGACGATGACACCAACACACATAACGCACGTTCAGGGCAC
TGGAGCTTTCCATTGAGGGGAAGCACCTCCCTGGTATTGTGGACGCGCTC
GAAGGTCTTGGCCGTTGCTGCCTCGAGAACTGCCAATACAGGTGTGTGGG
CTGTTGCTGCTGTCTGACCTTCGAACCACTCTATGACCTGCGTGAGGGTT
GCAAAAGAGGTACTCGTTAAGAAAGGCCGGCAGCCGGTGACTAAAGCAGC
AGCTTTCGTGGCAATAGTGCTAACCATTCAAACTTGTTGAGGGCTGTCTT
GGAAGACAGCATTCAAATGTTGTAGCTGACGTGTGCAAAAAACCACTCGT
CTCTCCCTGCCCCACCCCACCAGCCGACGGTGACGTCTTGTGATTTCGGA
ACCTTCATGTATGGTGCTCGTTGTTCTTTGAATGTGTCACACAGGGACGC
TCTATATTCGCACCTCATTCTCTGTTGTTATGTTTGTTCGGTGGTGGCTC
AGGGATGCAGTTTCATTGTTCAAGCGGGCGCTTGCGCGGAACGTGGAGAT
AAGGAATCTCCCGCAAGACGCACGTCTTTTTCGCCTTCTAGAGGAAGGCC
ATCGCCGGATGGTTGATGAGGTGCGCATGGGATAGACGCCTTACTGTTCT
TGTATATCACAACACGATTTTGGTTGCGGGCAGGGCTCTCCGCTTGGAAG
CAGCATGGAATGAGTGATTGCACGCCGTGCTTACATCACAGGCCAGGAGA
AAGTGGAATTTTGGTTCGTCATTTCCTAGTGTCCTCCACTTCACATGTTC
GGGGAGATGCACAACATCGAAGCTCGGCCTGACAGCACATCCATATCCCA
TGACGTGCCTTCTCCATCTTGGCGGATACTGACGTCACCAGGAGCACGCC
AAGGTTTATGCAGACAGGGCCGAGTCGATTGAGAAGGAGATGGAGAGCAA
GCTTTCGAAAGCCAAGGCTAGTCTCGAAGATTCCACCACGCGCCTCGTCG
GGCGGACGGCTAACAGCGCCAAGGTTTGCTTGTGCTTGTGGAGCACCAAT
ACCTCTTATCCTGAGCTTGCTTGTGTTAATCTTGCCGCTCTTCAAGTAGC
CTCTTGTGTTAAGACCGCCCGTCTTCTGGTAGCTTTCAATATCTACTCGT
TAAGAATTTGGAGCTTCATGTGTGTGGCATGTCGCCGTGTAGTTGCAGAG
GGTGCCCTCGTCAACTCGTTGCTGTGTTCTCTTACTCCTTTGATTGTTAT
GGACAGATGACGATTAAAATTGTGTTTTTGGTCGGCCTATTTCGTCGATA
CCACGAATAACCCCCGACTTGGATCCGGCGTTTTGTGAAGGGTGACGTTG
GGTCCGCAGCTTTCGAACGACGTCTCTATCGCTCGGTCATGGTCCCCACG
ATGCTCAGGAGTAGTGAGAGGGGCGTTTGGTTTTGAAAACGGCGCTGTTC
ATGAAAACGCGTCATCAATCGCTCAGATTCTAGAATTTAGTGTGCACCCT
ATATCTTGTCCGTGGTAATTTTTTTCCAACGAACAACGCCACTGTTTGAC
AGAGTTCGTGCATAGGAAACTATTTTCCTCATGTGTCAATTAAACTGGGG
GGCAGGTGATTCGCTTGGAGAGGGTCACGGCGGGCTACGTAGCCATGTGC
TCGAGACGGGCGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7393:612..3376+

>mRNA_Ecto-sp13_S_contig7393.18570.1 ID=mRNA_Ecto-sp13_S_contig7393.18570.1|Name=mRNA_Ecto-sp13_S_contig7393.18570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7393:612..3376+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACATCTTCAGGGCGATGGGTTCATCAAGATTGGCCAGGCAGCGAAGGC
TTGCATCTGCTACTCTCAGCAGATTTCAAACCTTGGCATGCAGTCCGATC
GAATGGGCCTCAGTGCTCTCGGCGTGGCCCACGCTAGGCTAGCAAAGGCT
CAAAGAGCGTGCGATCGTGTCGACCTCGCGGCCGTGAGCTTCGAAAGGGC
ACTGGAGCTTTCCATTGAGGGGAAGCACCTCCCTGGTATTGTGGACGCGC
TCGAAGGTCTTGGCCGTTGCTGCCTCGAGAACTGCCAATACAGGGATGCA
GTTTCATTGTTCAAGCGGGCGCTTGCGCGGAACGTGGAGATAAGGAATCT
CCCGCAAGACGCACGTCTTTTTCGCCTTCTAGAGGAAGGCCATCGCCGGA
TGGTTGATGAGGAGCACGCCAAGGTTTATGCAGACAGGGCCGAGTCGATT
GAGAAGGAGATGGAGAGCAAGCTTTCGAAAGCCAAGGCTAGTCTCGAAGA
TTCCACCACGCGCCTCGTCGGGCGGACGGCTAACAGCGCCAAGGTGATTC
GCTTGGAGAGGGTCACGGCGGGCTACGTAGCCATGTGCTCGAGACGGGCG
TAC
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