mRNA_Ecto-sp13_S_contig7387.18565.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7387.18565.1
Unique NamemRNA_Ecto-sp13_S_contig7387.18565.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7387.18565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7387contigEcto-sp13_S_contig7387:2909..3774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size867
Hectar predicted targeting categorysignal anchor
Exons1
Cds size624
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464007.475589-UTR-Ecto-sp13_S_contig7387:2908..31501681464007.475589-UTR-Ecto-sp13_S_contig7387:2908..3150Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7387 2909..3150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464007.4848673-CDS-Ecto-sp13_S_contig7387:3150..37741681464007.4848673-CDS-Ecto-sp13_S_contig7387:3150..3774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7387 3151..3774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7387.18565.1prot_Ecto-sp13_S_contig7387.18565.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7387 3151..3774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7387.18565.1

>prot_Ecto-sp13_S_contig7387.18565.1 ID=prot_Ecto-sp13_S_contig7387.18565.1|Name=mRNA_Ecto-sp13_S_contig7387.18565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MGHGTVVRIRIDPPLANCIYHEPKQPSSIYRGQGCILHLEDCCVAANRRL
PLTCTHSWHPCKEDGVLLCAARTHVILPTPPLLLLLGLLLLLLAARRLRL
ATALLARRCRCLGLSLGFGCTACPSRGRAEEGPYVHGRPGGCCRSPCVRV
GGRADQAPARSSRRGIERASSTASKQAGAWASIFRSCGRGGKDGSDFGSR
HAVHRFTV
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mRNA from alignment at Ecto-sp13_S_contig7387:2909..3774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7387.18565.1 ID=mRNA_Ecto-sp13_S_contig7387.18565.1|Name=mRNA_Ecto-sp13_S_contig7387.18565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=866bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7387:2909..3774+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCCGCATCTACTACTACTGGCACTGCAACCGCTGCACCCGGAACATCT
TTGCCAGGAGTTTGTCTGCATGTCCGGTAGGGCTGGTCGGGACAAAATCA
ATCACGTCTGCTGACTGTTGTTGTGGTTTTGGAGTCGAGATGTGAAAGAA
AGGGTGGCACTCGTCGAAGCACGAGTCACAGACCAAATGCGGTGCTGTTC
AGGTGGCAGATTTACTGCGGGAGATAAGGCAGGGTGGTGGGCATGGGTCA
TGGCACTGTAGTTCGAATTCGCATCGATCCGCCACTCGCGAACTGTATCT
ACCACGAGCCCAAGCAGCCAAGCAGCATCTACAGAGGACAAGGATGTATT
CTACACTTGGAAGACTGCTGTGTCGCCGCCAACCGCCGCCTTCCATTGAC
GTGCACACACTCATGGCACCCATGTAAAGAAGACGGCGTGCTGCTGTGTG
CGGCAAGGACTCACGTCATCTTGCCGACACCACCCTTGCTGCTGCTCTTG
GGGCTGCTGCTGCTGCTGCTAGCGGCTCGGAGACTTCGCCTGGCCACCGC
CCTTCTTGCTCGCCGATGCCGGTGTCTTGGGCTTAGTCTTGGGTTTGGCT
GCACCGCCTGCCCCTCCCGAGGAAGGGCCGAAGAAGGACCGTATGTCCAT
GGTCGGCCGGGCGGTTGTTGTCGATCTCCGTGTGTGCGTGTCGGAGGGAG
AGCAGACCAAGCTCCTGCAAGAAGCAGCAGGCGGGGGATAGAGCGAGCAA
GCAGCACAGCAAGCAAGCAAGCAGGGGCTTGGGCTTCCATATTTCGAAGT
TGCGGGAGGGGTGGGAAGGATGGTTCAGATTTTGGTTCACGGCACGCAGT
TCACAGGTTCACAGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7387:2909..3774+

>mRNA_Ecto-sp13_S_contig7387.18565.1 ID=mRNA_Ecto-sp13_S_contig7387.18565.1|Name=mRNA_Ecto-sp13_S_contig7387.18565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7387:2909..3774+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTCATGGCACTGTAGTTCGAATTCGCATCGATCCGCCACTCGCGAA
CTGTATCTACCACGAGCCCAAGCAGCCAAGCAGCATCTACAGAGGACAAG
GATGTATTCTACACTTGGAAGACTGCTGTGTCGCCGCCAACCGCCGCCTT
CCATTGACGTGCACACACTCATGGCACCCATGTAAAGAAGACGGCGTGCT
GCTGTGTGCGGCAAGGACTCACGTCATCTTGCCGACACCACCCTTGCTGC
TGCTCTTGGGGCTGCTGCTGCTGCTGCTAGCGGCTCGGAGACTTCGCCTG
GCCACCGCCCTTCTTGCTCGCCGATGCCGGTGTCTTGGGCTTAGTCTTGG
GTTTGGCTGCACCGCCTGCCCCTCCCGAGGAAGGGCCGAAGAAGGACCGT
ATGTCCATGGTCGGCCGGGCGGTTGTTGTCGATCTCCGTGTGTGCGTGTC
GGAGGGAGAGCAGACCAAGCTCCTGCAAGAAGCAGCAGGCGGGGGATAGA
GCGAGCAAGCAGCACAGCAAGCAAGCAAGCAGGGGCTTGGGCTTCCATAT
TTCGAAGTTGCGGGAGGGGTGGGAAGGATGGTTCAGATTTTGGTTCACGG
CACGCAGTTCACAGGTTCACAGTT
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