prot_Ecto-sp13_S_contig7366.18539.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7366.18539.1
Unique Nameprot_Ecto-sp13_S_contig7366.18539.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length224
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7366.18539.1 vs. uniprot
Match: A0A6H5KYK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK4_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.860e-16
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 
Query:    1 MEMMKLRMRKALDSQLQKDKTAIAKKSTKDSKMAELDRKQQXXXEEQHERLQAR 54
            MEMMKLRMR+ALDSQLQKDKTAIAKKSTKDSKMAELDRKQQ XXEEQHERLQAR
Sbjct:  446 MEMMKLRMRRALDSQLQKDKTAIAKKSTKDSKMAELDRKQQQXXEEQHERLQAR 499
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7366.18539.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYK4_9PHAE3.860e-1696.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 29..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 202..223
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 167..177
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..147
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 148..166
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 178..201
NoneNo IPR availableTMHMMTMhelixcoord: 181..200
NoneNo IPR availableTMHMMTMhelixcoord: 147..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7366contigEcto-sp13_S_contig7366:3895..4987 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7366.18539.1mRNA_Ecto-sp13_S_contig7366.18539.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7366 3563..5832 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7366.18539.1 ID=prot_Ecto-sp13_S_contig7366.18539.1|Name=mRNA_Ecto-sp13_S_contig7366.18539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
MEMMKLRMRKALDSQLQKDKTAIAKKSTKDSKMAELDRKQQQLDEEQHER
LQARARAAGGRSRSRSRSRSGSPQQATGRRRRHRSRSRSSSSSSSRHRYR
RRRDDRETARSVSSSGSRSRSVPSHRWPKTRSRSRLTDRERERERANVGE
SPGIFVCWGLLQLVLVGRCGRGVGHCTASHPLLLLLLLLLLGWVLLVFVG
CKPPLRVEERGRSVVARPFGRCA*
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