mRNA_Ecto-sp13_S_contig7366.18539.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7366.18539.1
Unique NamemRNA_Ecto-sp13_S_contig7366.18539.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7366.18539.1 vs. uniprot
Match: A0A6H5KYK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 5.510e-26
Identity = 116/136 (85.29%), Postives = 117/136 (86.03%), Query Frame = 3 
Query:   12 GGSSRRSRRDSRSRSSGRDGRSSXXXXXXXXXXXXXXXGRRGXXXXXXXXXXXXXXXXXXXXSKQAK----PPPKAEKKLTPMEMMKLRMRKALDSQLQKDKTAIAKKSTKDSKMAELDRKQQQLDEEQHERLQAR 407
            GGSSRRSRRDSRSR SGRDG   XXXXXXXXXXXX   GRRG XXXXXXXXXXXXXXXXXXX         PPPKAEKKLTPMEMMKLRMR+ALDSQLQKDKTAIAKKSTKDSKMAELDRKQQQ  EEQHERLQAR
Sbjct:  364 GGSSRRSRRDSRSRXSGRDGXXXXXXXXXXXXXXXSGRGRRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPPKAEKKLTPMEMMKLRMRRALDSQLQKDKTAIAKKSTKDSKMAELDRKQQQXXEEQHERLQAR 499
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7366.18539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYK4_9PHAE5.510e-2685.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7366contigEcto-sp13_S_contig7366:3563..5832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1249
Hectar predicted targeting categoryother localisation
Exons3
Cds size672
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.9019246-UTR-Ecto-sp13_S_contig7366:3562..38941681464004.9019246-UTR-Ecto-sp13_S_contig7366:3562..3894Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7366 3563..3894 -
1681464004.933813-UTR-Ecto-sp13_S_contig7366:4987..49961681464004.933813-UTR-Ecto-sp13_S_contig7366:4987..4996Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7366 4988..4996 -
1681464004.9502256-UTR-Ecto-sp13_S_contig7366:5596..58321681464004.9502256-UTR-Ecto-sp13_S_contig7366:5596..5832Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7366 5597..5832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.9125717-CDS-Ecto-sp13_S_contig7366:3894..44501681464004.9125717-CDS-Ecto-sp13_S_contig7366:3894..4450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7366 3895..4450 -
1681464004.9231691-CDS-Ecto-sp13_S_contig7366:4871..49871681464004.9231691-CDS-Ecto-sp13_S_contig7366:4871..4987Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7366 4872..4987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7366.18539.1prot_Ecto-sp13_S_contig7366.18539.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7366 3895..4987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7366.18539.1

>prot_Ecto-sp13_S_contig7366.18539.1 ID=prot_Ecto-sp13_S_contig7366.18539.1|Name=mRNA_Ecto-sp13_S_contig7366.18539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
MEMMKLRMRKALDSQLQKDKTAIAKKSTKDSKMAELDRKQQQLDEEQHER
LQARARAAGGRSRSRSRSRSGSPQQATGRRRRHRSRSRSSSSSSSRHRYR
RRRDDRETARSVSSSGSRSRSVPSHRWPKTRSRSRLTDRERERERANVGE
SPGIFVCWGLLQLVLVGRCGRGVGHCTASHPLLLLLLLLLLGWVLLVFVG
CKPPLRVEERGRSVVARPFGRCA*
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mRNA from alignment at Ecto-sp13_S_contig7366:3563..5832-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7366.18539.1 ID=mRNA_Ecto-sp13_S_contig7366.18539.1|Name=mRNA_Ecto-sp13_S_contig7366.18539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7366:3563..5832- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCAGAGACGGCGGCAGCAGCAGACGCAGCAGGAGGGATAGCAGGAGC
CGAAGCAGCGGCAGGGACGGAAGAAGCAGCAGCCGGCGGGGAGGGGAAGA
CCGGGGGCGCAGCAGTAGCGGCAGAGGGCGCCGGGGTGGCGGCGACGACG
ACCGTGATAACAAGTCGGCGAGATCCGGGAGGGCCGGCGGTGGCGGGAGC
AAGCAGGCGAAACCACCACCGAAAGCGGAAAAGAAGGTAGGTTGGGGCAA
TTCGACACGCTCTCGCCGTAGGTATTTGGTACAGTCTCGGCCTCTTGCGG
GGGCCTCAGGATAGGGGGAGGGGGGGGGGTCTTGGGTTAGGGGATTCGTG
GTTGTGGGTCATGAGAGAGCAAAGGAGCTGGATCTCGGGGGAGGGGAGCA
GCGATGCAGTGCCGCAGCGTTGTGCGTTGTTGGCGAGAGAGACCGGGTGA
TACAACCTGTGTTCTGCGTCCTGCTTCGTGAGTTGGGGTCCTGTTTCATG
AGTTGGGAGAAAAGACTTTTTTTTGCAGCGGTTGTGCGGTGTGTCGTCGT
CCCCCCACCCTCCTGGGACGCGTCCATTCGTGTACAGTAGTGCGCCAACG
AACGAGTTTTAGTTTGTTCGACGCATCCCATGTCCAGCAGAGCGCACGAG
CTACTTTTATGGTGTCGTTCACGACTTGGTTCAAGAAGCTCCTGTGCGAC
CTTCCTCCTGCGTGACCAGGGGCTAATGCACCCAACGCACTTACCGCGCG
TAGACTGACGCCAGAATATGACGGGGTGAACACACACAAGCTATTGTTTG
TCTGCTCTCGATCTGGTTGTCGTTTTCGTCGAGCAGCTCACGCCCATGGA
GATGATGAAGCTGCGAATGCGCAAGGCCCTCGACAGCCAGCTGCAGAAGG
ACAAGACCGCCATCGCCAAGAAGTCCACCAAGGACAGCAAGATGGCAGAG
CTTGATCGCAAGTGAGCGACAACTGCGTTTTTATTGCTCCCCTTGAAAAA
GTTGTATGGCTCCCCTCAAAAATGGGGCCTTTGGGAGGGTAGGTTGATGC
CGGAGGTAGTGCGCAGGCGTTTGTCCACCTTTGCCGTGTGGCATGTAGCA
GCGTGCCCTTTGCGTCCTTTCTGGAGACTGCTGCCCCCCCTGCTCGTGCT
GGTGCTGCTCGGACTCTGTTGCTCACCGTGGGGTTGGACAAACGCCCCGT
GAGAAGTGCATGCCGTTCAATGCCCTGGCTGTCCGGTCCGAATTTCGGTG
CAGATGCATGTGTCATTATCGGCAGGTTGCGGAGATTGTCGCATACCCCT
TGTACCACGTCGTCGTCCCTCATGACGAGACCTCTCCCGCCAACACTCAA
CGCTTCTTTCTCCCATTGCTTGTCCGGCGCAGGCAGCAGCAGCTGGACGA
GGAGCAGCACGAGCGCCTGCAGGCGAGGGCAAGGGCCGCCGGAGGCCGCT
CGCGGTCGCGGTCGCGCTCCCGCTCCGGCTCCCCGCAACAAGCCACCGGC
CGCCGGCGGCGGCACCGCTCCAGGTCTCGTTCCTCCTCATCCTCTTCCAG
TCGGCACCGCTACCGCCGGCGACGTGACGACAGAGAAACTGCCAGGAGCG
TTTCCTCGTCCGGTTCCAGGTCGCGTTCCGTGCCCTCTCACAGGTGGCCT
AAAACCCGATCGCGCTCGCGACTGACAGACAGAGAGAGAGAGAGAGAGAG
AGCCAACGTGGGGGAGAGTCCGGGTATTTTTGTTTGTTGGGGTTTGCTGC
AACTGGTCCTCGTAGGGCGTTGCGGGCGAGGCGTCGGGCATTGTACTGCC
AGCCACCCGTTGCTGCTGCTGCTGCTGCTGCTGTTGTTGGGATGGGTGTT
GCTTGTGTTTGTGGGCTGCAAGCCCCCTCTACGCGTCGAGGAGCGTGGAC
GGTCCGTCGTCGCTCGACCTTTTGGAAGGTGTGCATGATGCCTCCGGAAC
TTGGGTGGGGGGGGGGCGGCGGACGGGCTTCGGAGCTAGGTGCTACCATG
CGTTGGCACACACACGCACGTGCCCTCTTCCCGCCCCACCGTCAACCTGC
AGCGGGCAAGGACCCGCAATGGGCGACGGCGACGGAGAGTCGGGTCTTGT
GGTGGCCAAGCGAATGGTTCTTTGCGTGCTTGACGCCGTTATCCGCCGGA
CTTTTATGTGTCTCCACTGCGCTCTCTTTGCTTTCTCTCGTAGAATCGTC
GTCTTTGGCGGGAAGGTGTTTTTTTCACTTGCCGAACCCGAAGGTGATAC
GCAAAGACGAAAATGCTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7366:3563..5832-

>mRNA_Ecto-sp13_S_contig7366.18539.1 ID=mRNA_Ecto-sp13_S_contig7366.18539.1|Name=mRNA_Ecto-sp13_S_contig7366.18539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7366:3563..5832- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGATGATGAAGCTGCGAATGCGCAAGGCCCTCGACAGCCAGCTGCA
GAAGGACAAGACCGCCATCGCCAAGAAGTCCACCAAGGACAGCAAGATGG
CAGAGCTTGATCGCAAGCAGCAGCAGCTGGACGAGGAGCAGCACGAGCGC
CTGCAGGCGAGGGCAAGGGCCGCCGGAGGCCGCTCGCGGTCGCGGTCGCG
CTCCCGCTCCGGCTCCCCGCAACAAGCCACCGGCCGCCGGCGGCGGCACC
GCTCCAGGTCTCGTTCCTCCTCATCCTCTTCCAGTCGGCACCGCTACCGC
CGGCGACGTGACGACAGAGAAACTGCCAGGAGCGTTTCCTCGTCCGGTTC
CAGGTCGCGTTCCGTGCCCTCTCACAGGTGGCCTAAAACCCGATCGCGCT
CGCGACTGACAGACAGAGAGAGAGAGAGAGAGAGAGCCAACGTGGGGGAG
AGTCCGGGTATTTTTGTTTGTTGGGGTTTGCTGCAACTGGTCCTCGTAGG
GCGTTGCGGGCGAGGCGTCGGGCATTGTACTGCCAGCCACCCGTTGCTGC
TGCTGCTGCTGCTGCTGTTGTTGGGATGGGTGTTGCTTGTGTTTGTGGGC
TGCAAGCCCCCTCTACGCGTCGAGGAGCGTGGACGGTCCGTCGTCGCTCG
ACCTTTTGGAAGGTGTGCATGA
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