mRNA_Ecto-sp13_S_contig73596.18528.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73596.18528.1
Unique NamemRNA_Ecto-sp13_S_contig73596.18528.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig73596.18528.1 vs. uniprot
Match: A0A6H5KEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ8_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 7.780e-46
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1
Query:    1 GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSSLIPAS 225
            GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSSLIPAS
Sbjct:  180 GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSSLIPAS 254          
BLAST of mRNA_Ecto-sp13_S_contig73596.18528.1 vs. uniprot
Match: A0A7S3EUW8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EUW8_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 6.780e-12
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1
Query:    1 GSPCILPTTAPVSFLDLGDLAELLQDGG----------HADLVTLETWSRDAGAYYCNEMFYRTLHAIRELG--------TPSVDGSSLIPASF 228
            G+ C+L TTAP+  ++L  L   L+DGG           A  + LE WSRDAG YYCNE+++RTL+ IR  G        + +  G+SL+PA F
Sbjct:   40 GAACLLGTTAPLDRINL-PLPAHLRDGGLAIQTLSLQQEAPRLPLELWSRDAGTYYCNEVYFRTLNVIRRAGLRPHYHPLSLASHGASLLPALF 132          
BLAST of mRNA_Ecto-sp13_S_contig73596.18528.1 vs. uniprot
Match: A0A7S4BFQ2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BFQ2_CHRCT)

HSP 1 Score: 61.2 bits (147), Expect = 3.410e-9
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    1 GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDG-SSLIPASF 228
            G+ C++PTTAP+  L L  L    +      L   E WSRDAG+YYCNE+++RTLHA+R     +  G + L+P  F
Sbjct:  351 GAACLVPTTAPMHKLTLPLLRRPHR------LEQEEIWSRDAGSYYCNEVYFRTLHAVRSKQIGAATGRAGLLPVVF 421          
BLAST of mRNA_Ecto-sp13_S_contig73596.18528.1 vs. uniprot
Match: A0A7S4VFG5_9DINO (Hypothetical protein n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VFG5_9DINO)

HSP 1 Score: 60.5 bits (145), Expect = 5.870e-9
Identity = 33/75 (44.00%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    7 PCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSS-LIPASF 228
            PC+L +TAP++ L+L  L               E WSRDAGAYYCNE++YRTL A+R    P   G   L+P  F
Sbjct:  242 PCLLASTAPLNGLELPLLRRFPSPR--------EIWSRDAGAYYCNEVYYRTLQAVRTRLIPPASGQQDLLPVIF 308          
BLAST of mRNA_Ecto-sp13_S_contig73596.18528.1 vs. uniprot
Match: A0A7S2W0K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0K8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.270e-8
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    4 SPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSSLIPASF 228
            +P +LPTT  + ++ L  L +      H   VT E WSRDAGAYYCNE++YR+L  +R     S D S +IP  F
Sbjct:   18 APHLLPTTVRLDYVTLRRLQQETASE-HLRRVT-ELWSRDAGAYYCNELYYRSLETVRR----SRDSSWVIPVLF 86          
BLAST of mRNA_Ecto-sp13_S_contig73596.18528.1 vs. uniprot
Match: A0A7S2VZR4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2VZR4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.540e-8
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    4 SPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSSLIPASF 228
            +P +LPTT  + ++ L  L +      H   VT E WSRDAGAYYCNE++YR+L  +R     S D S +IP  F
Sbjct:  208 APHLLPTTVRLDYVTLRRLQQETASE-HLRRVT-ELWSRDAGAYYCNELYYRSLETVRR----SRDSSWVIPVLF 276          
BLAST of mRNA_Ecto-sp13_S_contig73596.18528.1 vs. uniprot
Match: A0A7S3JRC4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRC4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.390e-7
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    7 PCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIR--ELGTPSVDGSSLI 216
            PC+  TTAP+  L L    E           T E WSRDAGA+YCNE+++R+LH +R  +L  PS   S L+
Sbjct:  190 PCLQVTTAPLDRLILPSTNE-----------TNEVWSRDAGAFYCNELYFRSLHTVRSRQLLVPSPSSSCLL 250          
BLAST of mRNA_Ecto-sp13_S_contig73596.18528.1 vs. uniprot
Match: A0A7S2Z4Q2_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z4Q2_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 1.630e-7
Identity = 31/58 (53.45%), Postives = 36/58 (62.07%), Query Frame = 1
Query:    4 SPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIR 177
            +P ILPTT         DL +L  D   A   T E WSRDAG YYCNE+FYR+LHA+R
Sbjct:   78 APPILPTTV--------DLGKLALDPTQA---TGEIWSRDAGHYYCNEIFYRSLHAVR 124          
BLAST of mRNA_Ecto-sp13_S_contig73596.18528.1 vs. uniprot
Match: A0A5B8MWB4_9CHLO (Uncharacterized protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MWB4_9CHLO)

HSP 1 Score: 53.5 bits (127), Expect = 1.250e-6
Identity = 28/61 (45.90%), Postives = 35/61 (57.38%), Query Frame = 1
Query:    1 GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIREL 183
            G   ILPTT  +  LDL      + DG   +    E WSRDAG +YCNE+FYRTL  +R +
Sbjct:  136 GGSTILPTTVDLGALDLAPALSGV-DGSSPE----EMWSRDAGHFYCNEIFYRTLRVVRRM 191          
BLAST of mRNA_Ecto-sp13_S_contig73596.18528.1 vs. uniprot
Match: A0A812X286_SYMPI (Pcp protein (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812X286_SYMPI)

HSP 1 Score: 50.8 bits (120), Expect = 3.570e-6
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 1
Query:    1 GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSSLIPASF 228
            G P +LPTT      DLG +A L     H      E WSRDAG ++CNE++YRTL +IRE       G+ LIP+ F
Sbjct:   53 GGPQLLPTTG-----DLGAVA-LNTQNPH------ELWSRDAGDFFCNEIYYRTLFSIREHRRLRCPGA-LIPSIF 115          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73596.18528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KEJ8_9PHAE7.780e-46100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3EUW8_9EUKA6.780e-1241.49Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S4BFQ2_CHRCT3.410e-942.86Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4VFG5_9DINO5.870e-944.00Hypothetical protein n=2 Tax=Alexandrium monilatum... [more]
A0A7S2W0K8_9STRA1.270e-844.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2VZR4_9STRA9.540e-844.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3JRC4_9STRA1.390e-743.06Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2Z4Q2_9CHLO1.630e-753.45Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A5B8MWB4_9CHLO1.250e-645.90Uncharacterized protein n=1 Tax=Chloropicon primus... [more]
A0A812X286_SYMPI3.570e-644.74Pcp protein (Fragment) n=1 Tax=Symbiodinium pilosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73596contigEcto-sp13_S_contig73596:386..613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size228
Hectar predicted targeting categoryother localisation
Exons1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.231315-CDS-Ecto-sp13_S_contig73596:385..6131681464004.231315-CDS-Ecto-sp13_S_contig73596:385..613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73596 386..613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73596.18528.1prot_Ecto-sp13_S_contig73596.18528.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73596 386..613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73596.18528.1

>prot_Ecto-sp13_S_contig73596.18528.1 ID=prot_Ecto-sp13_S_contig73596.18528.1|Name=mRNA_Ecto-sp13_S_contig73596.18528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEM
FYRTLHAIRELGTPSVDGSSLIPASF
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mRNA from alignment at Ecto-sp13_S_contig73596:386..613-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73596.18528.1 ID=mRNA_Ecto-sp13_S_contig73596.18528.1|Name=mRNA_Ecto-sp13_S_contig73596.18528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73596:386..613- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCCCCCTGCATTCTCCCCACCACGGCACCCGTGTCCTTCCTCGATCT CGGTGACCTCGCGGAGCTCCTACAAGACGGCGGGCACGCCGACCTCGTAA CTCTGGAGACTTGGAGCAGGGACGCCGGGGCGTACTATTGCAACGAGATG TTCTACCGCACGCTGCACGCCATTCGCGAGCTGGGCACCCCGTCGGTTGA TGGATCTTCTCTTATCCCGGCGAGTTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73596:386..613-

>mRNA_Ecto-sp13_S_contig73596.18528.1 ID=mRNA_Ecto-sp13_S_contig73596.18528.1|Name=mRNA_Ecto-sp13_S_contig73596.18528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73596:386..613- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCCCCCTGCATTCTCCCCACCACGGCACCCGTGTCCTTCCTCGATCT
CGGTGACCTCGCGGAGCTCCTACAAGACGGCGGGCACGCCGACCTCGTAA
CTCTGGAGACTTGGAGCAGGGACGCCGGGGCGTACTATTGCAACGAGATG
TTCTACCGCACGCTGCACGCCATTCGCGAGCTGGGCACCCCGTCGGTTGA
TGGATCTTCTCTTATCCCGGCGAGTTTC
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