mRNA_Ecto-sp13_S_contig7357.18526.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7357.18526.1
Unique NamemRNA_Ecto-sp13_S_contig7357.18526.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7357.18526.1 vs. uniprot
Match: D8LMB9_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB9_ECTSI)

HSP 1 Score: 374 bits (961), Expect = 5.460e-129
Identity = 177/194 (91.24%), Postives = 183/194 (94.33%), Query Frame = 1 
Query:    1 SHVRCFRCGQRGHSTPTCRVEKSHLPSRCDTCLGFGHDASVCTSEAEPAVEVPPLKEKAAFSEEVAMERAQQPGKLDAGGPVEVEEVVRRCNPEDFVFGSAAAYHCLATADGIRNYRTCTGTLRDAAWNPIQVVGCGDLVVSFPSDTGRVNLTLKNVKHVPQVSHNIISTGCLVDEGHTFQFDRNGTMLNLPGG 582
            SHVRCFRCGQRGH TPTCRVEKS LP+RCDTCLGFGHDASVCTSEAEP++E PPLKEKAAFSEE  +ERAQ+PGKLD GGPVEVEEVVR CN EDFVFGSAAAYHCLATADGIRNYRTCTGTL DAAWNPIQ+VGCGDLVVSFPSDTGRVNLTLKNVKHVPQVS NIISTGCLVDEGHTFQFDRNGTMLNL GG
Sbjct:  112 SHVRCFRCGQRGHFTPTCRVEKSDLPARCDTCLGFGHDASVCTSEAEPSIEAPPLKEKAAFSEEAVVERAQRPGKLDLGGPVEVEEVVRLCNTEDFVFGSAAAYHCLATADGIRNYRTCTGTLCDAAWNPIQIVGCGDLVVSFPSDTGRVNLTLKNVKHVPQVSRNIISTGCLVDEGHTFQFDRNGTMLNLAGG 305
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7357.18526.1 vs. uniprot
Match: UPI00064DBE39 (retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064DBE39)

HSP 1 Score: 53.1 bits (126), Expect = 7.620e-5
Identity = 40/114 (35.09%), Postives = 58/114 (50.88%), Query Frame = 1 
Query:  250 VEEVVRRCNPEDFVFGSAAAYHCLATADGIRNY---RTCTGTLRDAAWNPIQVVGCGDLVVSFPSDTGRVNLTLKNVKHVPQVSHNIISTGCLVDEGHTFQFDRNGTMLNLPGG 582
            V  V+   +  +++  SA +YH     +   +Y   + C  TL D     I V G G + + F S  G V LTLKNV+HVP +SHN+IS   L D+G  F+ D     +N+  G
Sbjct:    5 VNSVLASLSENEWLLDSACSYHMTPRREVFSDYVQMKNCGVTLADGTM--IVVNGIGTVCLKFVS--GSV-LTLKNVRHVPTLSHNLISCAVLEDDG--FRGDWGDGCMNIMKG 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7357.18526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMB9_ECTSI5.460e-12991.24CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
UPI00064DBE397.620e-535.09retrovirus-related Pol polyprotein from transposon... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7357contigEcto-sp13_S_contig7357:113..694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size582
Hectar predicted targeting categoryother localisation
Exons1
Cds size582
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.0655541-CDS-Ecto-sp13_S_contig7357:112..6941681464004.0655541-CDS-Ecto-sp13_S_contig7357:112..694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7357 113..694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7357.18526.1prot_Ecto-sp13_S_contig7357.18526.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7357 113..694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7357.18526.1

>prot_Ecto-sp13_S_contig7357.18526.1 ID=prot_Ecto-sp13_S_contig7357.18526.1|Name=mRNA_Ecto-sp13_S_contig7357.18526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
SHVRCFRCGQRGHSTPTCRVEKSHLPSRCDTCLGFGHDASVCTSEAEPAV
EVPPLKEKAAFSEEVAMERAQQPGKLDAGGPVEVEEVVRRCNPEDFVFGS
AAAYHCLATADGIRNYRTCTGTLRDAAWNPIQVVGCGDLVVSFPSDTGRV
NLTLKNVKHVPQVSHNIISTGCLVDEGHTFQFDRNGTMLNLPGG
back to top

mRNA from alignment at Ecto-sp13_S_contig7357:113..694-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7357.18526.1 ID=mRNA_Ecto-sp13_S_contig7357.18526.1|Name=mRNA_Ecto-sp13_S_contig7357.18526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7357:113..694- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCACGTGCGCTGTTTCCGATGTGGCCAGAGGGGACACTCCACGCCCAC
GTGCCGTGTTGAAAAAAGCCATCTCCCCTCCAGGTGCGATACCTGCCTCG
GGTTTGGCCACGACGCTAGCGTGTGTACCTCCGAAGCAGAACCGGCGGTC
GAAGTCCCTCCGCTGAAGGAGAAGGCCGCTTTCAGCGAGGAAGTGGCCAT
GGAAAGAGCACAACAACCAGGCAAACTTGATGCGGGCGGTCCTGTCGAGG
TTGAGGAGGTGGTCAGGCGGTGCAACCCGGAGGATTTTGTTTTCGGTAGT
GCCGCCGCCTACCACTGTCTCGCAACGGCGGATGGCATCCGCAACTATCG
CACGTGTACGGGCACCCTTCGTGATGCGGCTTGGAACCCGATCCAAGTTG
TTGGTTGCGGCGACTTGGTTGTATCATTTCCCTCTGACACGGGGCGGGTA
AACCTGACATTGAAAAACGTGAAACACGTACCCCAAGTAAGCCACAACAT
AATCTCTACTGGGTGCTTGGTAGACGAGGGCCACACTTTCCAATTCGACA
GGAACGGGACTATGCTCAACCTCCCCGGAGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7357:113..694-

>mRNA_Ecto-sp13_S_contig7357.18526.1 ID=mRNA_Ecto-sp13_S_contig7357.18526.1|Name=mRNA_Ecto-sp13_S_contig7357.18526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7357:113..694- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCACGTGCGCTGTTTCCGATGTGGCCAGAGGGGACACTCCACGCCCAC
GTGCCGTGTTGAAAAAAGCCATCTCCCCTCCAGGTGCGATACCTGCCTCG
GGTTTGGCCACGACGCTAGCGTGTGTACCTCCGAAGCAGAACCGGCGGTC
GAAGTCCCTCCGCTGAAGGAGAAGGCCGCTTTCAGCGAGGAAGTGGCCAT
GGAAAGAGCACAACAACCAGGCAAACTTGATGCGGGCGGTCCTGTCGAGG
TTGAGGAGGTGGTCAGGCGGTGCAACCCGGAGGATTTTGTTTTCGGTAGT
GCCGCCGCCTACCACTGTCTCGCAACGGCGGATGGCATCCGCAACTATCG
CACGTGTACGGGCACCCTTCGTGATGCGGCTTGGAACCCGATCCAAGTTG
TTGGTTGCGGCGACTTGGTTGTATCATTTCCCTCTGACACGGGGCGGGTA
AACCTGACATTGAAAAACGTGAAACACGTACCCCAAGTAAGCCACAACAT
AATCTCTACTGGGTGCTTGGTAGACGAGGGCCACACTTTCCAATTCGACA
GGAACGGGACTATGCTCAACCTCCCCGGAGGA
back to top