mRNA_Ecto-sp13_S_contig73147.18478.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig73147.18478.1
Unique Name	mRNA_Ecto-sp13_S_contig73147.18478.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot
Match: A0A6H5KBC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBC6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 4.340e-29
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 1

Query:    1 PEREADTQTDDFHERPPTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKV 174
            PEREADTQTDDF ERP TPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKV
Sbjct:   31 PEREADTQTDDFQERPQTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKV 88

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BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot
Match: D7FP98_ECTSI (Flagellar radial spoke protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP98_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 9.770e-28
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 1

Query:    1 PEREADTQTDDFHERPPTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGK 171
            PEREADTQTDDF ERP TPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGK
Sbjct:  133 PEREADTQTDDFQERPQTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGK 189

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BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot
Match: A0A7J7Q4Y5_9CHLO (Radial spoke protein 3-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q4Y5_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 7.620e-14
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1

Query:    1 PEREADTQTDDFHERPPTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKV 174
            PE +  TQTD F +RPPTP FVP K+G+DA TQIE  + LFDF+AEV+P+L VLVGKV
Sbjct:  116 PEADTTTQTDAFLDRPPTPQFVPTKSGLDAATQIEQGE-LFDFDAEVEPLLEVLVGKV 172

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BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot
Match: A0A2R5GH80_9STRA (Radial spoke head protein 3-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GH80_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.130e-14
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1

Query:    1 PEREADTQTDDFHERPPTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGK 171
            PE E +TQTD F +RP  P FVP KTG+DA TQ+EV D+LFDF+AEV+P+L VLVGK
Sbjct:  121 PETETETQTDPFMDRPSLPLFVPFKTGIDAETQVEV-DELFDFDAEVEPILEVLVGK 176

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BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot
Match: A0A383WN54_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WN54_TETOB)

HSP 1 Score: 73.6 bits (179), Expect = 1.060e-13
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1

Query:    1 PEREADTQTDDFHERPPTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKV 174
            PE +  TQTD F +RPPTP FVP K+G DA TQIE  + LFDF+AEV+P+L VLVGKV
Sbjct:  115 PEADTTTQTDAFLDRPPTPQFVPTKSGTDAATQIEQGE-LFDFDAEVEPLLEVLVGKV 171

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BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot
Match: A0A836BU12_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BU12_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.410e-13
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1

Query:    1 PEREADTQTDDFHERPPTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKV 174
            PE +  TQTD F +RPPTP FVP+KTG DA TQIE  D LFDF+ EV+P+L VLVGKV
Sbjct:   68 PEADTSTQTDAFLDRPPTPLFVPQKTGTDAVTQIENGD-LFDFDFEVEPILEVLVGKV 124

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BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot
Match: A0A2V0PE13_9CHLO (Radial spoke n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PE13_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 1.420e-13
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 1

Query:    1 PEREADTQTDDFHERPPTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKV 174
            PE +   QTD+F ERPPTP FVP K+G+DA TQIE  D LFDF+ EV+P+L VLVGKV
Sbjct:  101 PEADVAAQTDEFLERPPTPAFVPAKSGLDAATQIEQGD-LFDFDLEVEPLLEVLVGKV 157

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BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot
Match: D8U522_VOLCA (Uncharacterized protein n=5 Tax=Volvox TaxID=3066 RepID=D8U522_VOLCA)

HSP 1 Score: 73.2 bits (178), Expect = 1.430e-13
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1

Query:    1 PEREADTQTDDFHERPPTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKV 174
            PE +  TQTD F +RPPTP FVP+KTG DA TQIE  D LFDF+ EV+P+L VLVGKV
Sbjct:  111 PEADTSTQTDAFLDRPPTPLFVPQKTGTDAVTQIENGD-LFDFDFEVEPILEVLVGKV 167

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BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot
Match: A0A150GHZ9_GONPE (RSP3 protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GHZ9_GONPE)

HSP 1 Score: 73.2 bits (178), Expect = 1.430e-13
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1

Query:    1 PEREADTQTDDFHERPPTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKV 174
            PE +  TQTD F +RPPTP FVP+KTG DA TQIE  D LFDF+ EV+P+L VLVGKV
Sbjct:  111 PEADTSTQTDAFLDRPPTPLFVPQKTGTDAITQIENGD-LFDFDFEVEPILEVLVGKV 167

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BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot
Match: RSP3_CHLRE (Flagellar radial spoke protein 3 n=4 Tax=Chlamydomonas TaxID=3052 RepID=RSP3_CHLRE)

HSP 1 Score: 73.2 bits (178), Expect = 1.430e-13
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1

Query:    1 PEREADTQTDDFHERPPTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPMLAVLVGKV 174
            PE +  TQTD F +RPPTP FVP+KTG DA TQIE  D LFDF+ EV+P+L VLVGKV
Sbjct:  113 PEADTSTQTDAFLDRPPTPLFVPQKTGTDAITQIENGD-LFDFDFEVEPILEVLVGKV 169

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig73147.18478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KBC6_9PHAE	4.340e-29	96.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FP98_ECTSI	9.770e-28	96.49	Flagellar radial spoke protein n=1 Tax=Ectocarpus ...	[more]
A0A7J7Q4Y5_9CHLO	7.620e-14	65.52	Radial spoke protein 3-domain-containing protein n...	[more]
A0A2R5GH80_9STRA	9.130e-14	66.67	Radial spoke head protein 3-like n=1 Tax=Hondaea f...	[more]
A0A383WN54_TETOB	1.060e-13	65.52	Uncharacterized protein n=1 Tax=Tetradesmus obliqu...	[more]
A0A836BU12_9CHLO	1.410e-13	67.24	Uncharacterized protein n=1 Tax=Edaphochlamys deba...	[more]
A0A2V0PE13_9CHLO	1.420e-13	65.52	Radial spoke n=1 Tax=Raphidocelis subcapitata TaxI...	[more]
D8U522_VOLCA	1.430e-13	67.24	Uncharacterized protein n=5 Tax=Volvox TaxID=3066 ...	[more]
A0A150GHZ9_GONPE	1.430e-13	67.24	RSP3 protein n=1 Tax=Gonium pectorale TaxID=33097 ...	[more]
RSP3_CHLRE	1.430e-13	67.24	Flagellar radial spoke protein 3 n=4 Tax=Chlamydom...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig73147	contig	Ecto-sp13_S_contig73147:350..547 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	112.8
Seed ortholog evalue	5.9e-23
Seed eggNOG ortholog	2880.D7FP98
Model size	198
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	Radial spoke protein 3
EggNOG OGs	2BDNM@1,2S132@2759
Cds size	198
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463999.353924-CDS-Ecto-sp13_S_contig73147:349..547	1681463999.353924-CDS-Ecto-sp13_S_contig73147:349..547	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig73147 350..547 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig73147.18478.1	prot_Ecto-sp13_S_contig73147.18478.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig73147 350..547 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig73147:350..547+
coding sequence from alignment at Ecto-sp13_S_contig73147:350..547+

protein sequence of mRNA_Ecto-sp13_S_contig73147.18478.1

>prot_Ecto-sp13_S_contig73147.18478.1 ID=prot_Ecto-sp13_S_contig73147.18478.1|Name=mRNA_Ecto-sp13_S_contig73147.18478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
PEREADTQTDDFHERPPTPDFVPKKTGVDAWTQIEVSDKLFDFEAEVQPM
LAVLVGKVRGTPNFL*

mRNA from alignment at Ecto-sp13_S_contig73147:350..547+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig73147.18478.1 ID=mRNA_Ecto-sp13_S_contig73147.18478.1|Name=mRNA_Ecto-sp13_S_contig73147.18478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73147:350..547+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGAGCGTGAGGCGGACACCCAAACCGACGACTTTCATGAGAGGCCACC
AACCCCAGACTTCGTACCCAAAAAGACGGGCGTGGATGCTTGGACTCAAA
TAGAGGTGTCTGACAAGCTATTCGACTTCGAAGCGGAGGTCCAGCCCATG
TTGGCAGTCTTGGTCGGGAAGGTAAGAGGTACACCTAATTTTCTATAA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73147:350..547+

>mRNA_Ecto-sp13_S_contig73147.18478.1 ID=mRNA_Ecto-sp13_S_contig73147.18478.1|Name=mRNA_Ecto-sp13_S_contig73147.18478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73147:350..547+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCAGAGCGTGAGGCGGACACCCAAACCGACGACTTTCATGAGAGGCCACC
AACCCCAGACTTCGTACCCAAAAAGACGGGCGTGGATGCTTGGACTCAAA
TAGAGGTGTCTGACAAGCTATTCGACTTCGAAGCGGAGGTCCAGCCCATG
TTGGCAGTCTTGGTCGGGAAGGTAAGAGGTACACCTAATTTTCTATAA