mRNA_Ecto-sp13_S_contig7312.18475.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7312.18475.1
Unique NamemRNA_Ecto-sp13_S_contig7312.18475.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7312.18475.1 vs. uniprot
Match: A0A6H5KBW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW0_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.260e-38
Identity = 86/102 (84.31%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:   46 SASALTSPEYAPGDVDMLAEMGFDRARVVLALKACSGSVERAAEWLLT--GDXXXXXXXVPAGGGMVHGPHLPGGGALAIGQXXXXXGMGWLGGGTELSRIV 345
            SASAL SPE+A  DVDMLAEMGFDRARVVLALKACSGSVERAAEWLLT  GD XXXXXXVP  GGMVHGPHLPGGGALA GQ     GMGWLGGGTELS+IV
Sbjct:  424 SASALISPEFASDDVDMLAEMGFDRARVVLALKACSGSVERAAEWLLTWDGDDXXXXXXVPGSGGMVHGPHLPGGGALAGGQDGDGGGMGWLGGGTELSKIV 525
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7312.18475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBW0_9PHAE1.260e-3884.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7312contigEcto-sp13_S_contig7312:4918..5264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size347
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463999.1815293-CDS-Ecto-sp13_S_contig7312:4917..52621681463999.1815293-CDS-Ecto-sp13_S_contig7312:4917..5262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7312 4918..5262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7312.18475.1prot_Ecto-sp13_S_contig7312.18475.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7312 4918..5262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7312.18475.1

>prot_Ecto-sp13_S_contig7312.18475.1 ID=prot_Ecto-sp13_S_contig7312.18475.1|Name=mRNA_Ecto-sp13_S_contig7312.18475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
LSEQIAAAVAAAPTTSASALTSPEYAPGDVDMLAEMGFDRARVVLALKAC
SGSVERAAEWLLTGDDDDGGGGVPAGGGMVHGPHLPGGGALAIGQDGDGG
GMGWLGGGTELSRIV
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mRNA from alignment at Ecto-sp13_S_contig7312:4918..5264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7312.18475.1 ID=mRNA_Ecto-sp13_S_contig7312.18475.1|Name=mRNA_Ecto-sp13_S_contig7312.18475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=347bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7312:4918..5264+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTCGGAACAAATAGCGGCGGCGGTGGCGGCGGCGCCCACGACGTCGGC
ATCGGCGTTGACATCTCCCGAGTACGCGCCGGGCGACGTGGACATGCTCG
CGGAGATGGGGTTCGACAGGGCGCGGGTGGTGCTCGCGCTGAAGGCTTGC
AGCGGCAGCGTGGAGCGCGCGGCCGAGTGGCTTCTGACCGGGGACGATGA
CGATGGCGGTGGTGGTGTTCCCGCGGGCGGCGGGATGGTGCACGGGCCGC
ACTTGCCCGGCGGCGGCGCGCTTGCGATAGGGCAAGACGGCGACGGAGGA
GGGATGGGGTGGCTGGGCGGCGGCACTGAGCTGAGCAGGATTGTTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7312:4918..5264+

>mRNA_Ecto-sp13_S_contig7312.18475.1 ID=mRNA_Ecto-sp13_S_contig7312.18475.1|Name=mRNA_Ecto-sp13_S_contig7312.18475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7312:4918..5264+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTCGGAACAAATAGCGGCGGCGGTGGCGGCGGCGCCCACGACGTCGGC
ATCGGCGTTGACATCTCCCGAGTACGCGCCGGGCGACGTGGACATGCTCG
CGGAGATGGGGTTCGACAGGGCGCGGGTGGTGCTCGCGCTGAAGGCTTGC
AGCGGCAGCGTGGAGCGCGCGGCCGAGTGGCTTCTGACCGGGGACGATGA
CGATGGCGGTGGTGGTGTTCCCGCGGGCGGCGGGATGGTGCACGGGCCGC
ACTTGCCCGGCGGCGGCGCGCTTGCGATAGGGCAAGACGGCGACGGAGGA
GGGATGGGGTGGCTGGGCGGCGGCACTGAGCTGAGCAGGATTGTT
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