mRNA_Ecto-sp13_S_contig730.18462.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig730.18462.1
Unique NamemRNA_Ecto-sp13_S_contig730.18462.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig730.18462.1 vs. uniprot
Match: A0A6H5J8H8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8H8_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 7.250e-25
Identity = 86/97 (88.66%), Postives = 88/97 (90.72%), Query Frame = 3 
Query:  903 SEHMGSARLAGFAMGIDGEVDSATLEVMSQLAGCVASGTSRFTIAGVTPDQHEQKXXXXXXXXXXXXXXXXXXXXXXXXXX-ICPPPEIRSLSARHR 1190
            SEH+GSARLAGFAMGIDGEVDSATLEVMSQLAGCVASGTSRFTIAGVTP+QHE  XXXXXXXXXXXXXXXXXXXX       ICPPPEIRSLSARHR
Sbjct: 1296 SEHVGSARLAGFAMGIDGEVDSATLEVMSQLAGCVASGTSRFTIAGVTPEQHEXXXXXXXXXXXXXXXXXXXXXXVDDSGGGICPPPEIRSLSARHR 1392
[Close]
BLAST of mRNA_Ecto-sp13_S_contig730.18462.1 vs. uniprot
Match: D8LRB4_ECTSI (Cell surface protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB4_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 9.930e-12
Identity = 48/68 (70.59%), Postives = 50/68 (73.53%), Query Frame = 3 
Query:   60 LSVGVPTASGSDGECGRSSDGQVVTLSGSPGPSVCEGKAADGAAATAEVVAAAAAKPAEATEQSSHEA 263
            LSVG+PTASGSDG CGR SDGQV  LSGSPGPS CEG+ A  AA     V    AKPAEATE SSHEA
Sbjct:  574 LSVGMPTASGSDGACGRPSDGQVGILSGSPGPSACEGEEAAAAA-----VXXXXAKPAEATEPSSHEA 636
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig730.18462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J8H8_9PHAE7.250e-2588.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRB4_ECTSI9.930e-1270.59Cell surface protein n=1 Tax=Ectocarpus siliculosu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig730contigEcto-sp13_S_contig730:15158..17046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1194
Hectar predicted targeting categoryother localisation
Exons2
Cds size825
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463997.7774599-UTR-Ecto-sp13_S_contig730:15157..151581681463997.7774599-UTR-Ecto-sp13_S_contig730:15157..15158Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig730 15158..15158 -
1681463997.8235083-UTR-Ecto-sp13_S_contig730:16678..170461681463997.8235083-UTR-Ecto-sp13_S_contig730:16678..17046Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig730 16679..17046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463997.7960868-CDS-Ecto-sp13_S_contig730:15158..153711681463997.7960868-CDS-Ecto-sp13_S_contig730:15158..15371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig730 15159..15371 -
1681463997.8108525-CDS-Ecto-sp13_S_contig730:16066..166781681463997.8108525-CDS-Ecto-sp13_S_contig730:16066..16678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig730 16067..16678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig730.18462.1prot_Ecto-sp13_S_contig730.18462.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig730 15159..16678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig730.18462.1

>prot_Ecto-sp13_S_contig730.18462.1 ID=prot_Ecto-sp13_S_contig730.18462.1|Name=mRNA_Ecto-sp13_S_contig730.18462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MEEAEAAEATELSTEVVEPADVTGPSTQEAEPAKVAEPAEATESSTEVAE
PADVTEPSIQEAEPAEGAEPCMKEAKPVGATEPSTEVAEPADVTEPSTQE
AEPAEGAEPCMKEAEPVGVTELSTEGVEPSEPAEPSTRAAVPSEVAEPST
QEAESAEATEPSTLVVEPSEPAEPSTKASEHMGSARLAGFAMGIDGEVDS
ATLEVMSQLAGCVASGTSRFTIAGVTPDQHEQKQQQQQKPSHDGNEGGDD
EDADDSGGGICPPPEIRSLSARHR*
back to top

mRNA from alignment at Ecto-sp13_S_contig730:15158..17046-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig730.18462.1 ID=mRNA_Ecto-sp13_S_contig730.18462.1|Name=mRNA_Ecto-sp13_S_contig730.18462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1889bp|location=Sequence derived from alignment at Ecto-sp13_S_contig730:15158..17046- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATAGTTTCTCTTCGCTGGTGATCGTGAAAGGCGGGGAGGAAGGGGGG
GGAGGGGACTTGAGTGTAGGCGTGCCAACAGCAAGCGGGAGCGATGGCGA
ATGCGGCCGCTCCTCGGATGGCCAAGTCGTCACACTCTCGGGCTCGCCGG
GCCCTAGCGTCTGCGAGGGGAAGGCGGCGGATGGTGCGGCGGCTACGGCA
GAAGTGGTGGCGGCGGCGGCGGCGAAGCCTGCCGAGGCCACGGAACAATC
CTCGCATGAAGCTGAAGCTGCCGAGGCCACGGAGCCTTCCACCGAAGTAG
CCGAACCTGCCGACGTTACGGAACCTTCTACTCAAGAAGCGGAACCTGCC
GAGGGCGCGGAACCTTGCATGGAAGAAGCTGAAGCTGCCGAGGCCACGGA
ACTTTCCACCGAAGTAGTCGAACCTGCCGACGTCACGGGACCTTCTACTC
AAGAAGCGGAACCTGCCAAGGTCGCGGAACCTGCCGAGGCCACGGAATCT
TCCACGGAAGTAGCCGAACCTGCCGACGTCACGGAACCTTCTATTCAAGA
AGCGGAACCTGCCGAGGGCGCGGAACCTTGCATGAAAGAAGCGAAACCTG
TCGGGGCCACGGAACCTTCCACCGAAGTAGCAGAACCTGCCGACGTCACG
GAACCTTCTACTCAAGAAGCGGAACCTGCCGAGGGCGCGGAACCTTGCAT
GAAAGAAGCGGAACCTGTCGGAGTCACGGAACTTTCCACGGAGGGAGTGG
AACCTTCCGAGCCCGCGGAACCCTCCACAAGAGCAGCGGTACCTTCCGAG
GTCGCGGAACCTTCCACTCAAGAAGCAGAATCTGCCGAGGCCACGGAGCC
TTCCACACTGGTAGTGGAACCTTCCGAGCCCGCGGAACCCTCCACGAAAG
CCTCGGAACACATGGGATCGGCGCGGCTGGCGGGTTTTGCCATGGGAATC
GATGGGGAGGTCGACAGCGCTACCCTTGAGGTGAGCGTTTGGCAAAGATA
AATTTAGCCGCACATACACTGTGGGGACCGGGGGTAAGCCTGCCAGACTG
CTCCAGGAGACAGGGTTACCGCGATGGGGCCGGAGTCATGGGGGGGTGCG
GGGGGTAGGGTGTGATAACTGTGTGTGCCCCCGAGCCACGAACCAGGTTA
TTGAAAAGAGTAAAGGTGGGGGAAACGAGACGGCGGCGGAGCAAAGGGAG
GAACAACTTTTGGTGGATGACGTCGTTCCTGGTGTGTGGAGGTCGTACGC
ACTGCCGTATGCATAGGTGCTGAGTGCAGTGCGTTGAGGCCGACGTGAGA
GAGATGCCGTGTGCTTCTGTGTTGTATGTTGTGTTGTATGCAGCTTGCTC
CCCGTTCCTGGCGGGGGAAAAGCACGGCAGACAGCATCCTGTTCCAAAAC
TCTGACTGAGTGCCATCTCTCTCTCTCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCTCTCTTCCTCCNNNNNNNNNCCCTTTCTCGGGGGCGAAAA
ACCGGACAACTACGCCCCTTTCCCAAAATCCTCCGTGTGGCCCCCTCCCC
CCCCCCCCCCCCCCCCCCCCCGCCTCTCTTTCTGTGTCTCCGCATCATTT
CTCGCCCCTCAACACTAAGCCCTTCCTCTTCACGGCTGTACCTGTTCACT
TCCTTCCTGCCCCCCTCTGCGCTAGGTGATGAGCCAACTTGCTGGTTGCG
TCGCCTCCGGTACCAGCCGCTTTACCATCGCGGGAGTTACGCCGGACCAA
CATGAGCAGAAACAGCAGCAGCAGCAGAAACCCTCTCACGACGGTAACGA
AGGTGGCGATGACGAGGACGCCGACGATAGCGGGGGAGGTATCTGCCCAC
CGCCGGAAATCCGTTCTCTATCAGCCAGGCACCGTTGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig730:15158..17046-

>mRNA_Ecto-sp13_S_contig730.18462.1 ID=mRNA_Ecto-sp13_S_contig730.18462.1|Name=mRNA_Ecto-sp13_S_contig730.18462.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig730:15158..17046- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGAAGCTGAAGCTGCCGAGGCCACGGAACTTTCCACCGAAGTAGT
CGAACCTGCCGACGTCACGGGACCTTCTACTCAAGAAGCGGAACCTGCCA
AGGTCGCGGAACCTGCCGAGGCCACGGAATCTTCCACGGAAGTAGCCGAA
CCTGCCGACGTCACGGAACCTTCTATTCAAGAAGCGGAACCTGCCGAGGG
CGCGGAACCTTGCATGAAAGAAGCGAAACCTGTCGGGGCCACGGAACCTT
CCACCGAAGTAGCAGAACCTGCCGACGTCACGGAACCTTCTACTCAAGAA
GCGGAACCTGCCGAGGGCGCGGAACCTTGCATGAAAGAAGCGGAACCTGT
CGGAGTCACGGAACTTTCCACGGAGGGAGTGGAACCTTCCGAGCCCGCGG
AACCCTCCACAAGAGCAGCGGTACCTTCCGAGGTCGCGGAACCTTCCACT
CAAGAAGCAGAATCTGCCGAGGCCACGGAGCCTTCCACACTGGTAGTGGA
ACCTTCCGAGCCCGCGGAACCCTCCACGAAAGCCTCGGAACACATGGGAT
CGGCGCGGCTGGCGGGTTTTGCCATGGGAATCGATGGGGAGGTCGACAGC
GCTACCCTTGAGGTGATGAGCCAACTTGCTGGTTGCGTCGCCTCCGGTAC
CAGCCGCTTTACCATCGCGGGAGTTACGCCGGACCAACATGAGCAGAAAC
AGCAGCAGCAGCAGAAACCCTCTCACGACGGTAACGAAGGTGGCGATGAC
GAGGACGCCGACGATAGCGGGGGAGGTATCTGCCCACCGCCGGAAATCCG
TTCTCTATCAGCCAGGCACCGTTGA
back to top