prot_Ecto-sp13_S_contig72913.18445.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig72913.18445.1
Unique Nameprot_Ecto-sp13_S_contig72913.18445.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length103
Homology
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 3.170e-54
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 101
            RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAK+LRMER EGATLDVSFKPESG TS ADAESE LLRRSLEEVVLRSRYPRTVVSVIIQV
Sbjct:    9 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQV 109          
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC)

HSP 1 Score: 106 bits (265), Expect = 1.600e-26
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 101
            R   +IRPLA EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+  GATL+V+FK E G  S  D E E +LR + E +++   +PR VVS+ +QV
Sbjct:   11 RLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQV 111          
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.790e-26
Identity = 56/101 (55.45%), Postives = 74/101 (73.27%), Query Frame = 0
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 101
            R  +QIR L A+QGILNRADGS RF  GNTSVL AVYGPA     + E+P+ A ++VS++ + G  + ADAE E  +RR+LEE V  +RYPR+V+SV++QV
Sbjct:   10 RTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQV 110          
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.270e-26
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 101
            R   +IRPLA EQG+LNRADGS+RF  G TSVLA+V GPA AK  R E+   ATL+V FKPE G  S  D E E +LR++ E ++L   +PR V+SV +QV
Sbjct:   12 RLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQV 112          
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.170e-25
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 101
            R   +IRPLA EQG+LNRADGSARF  G TSV+A+V GPAPAK  R E    ATLDV FK E G  +  D E E +LR++ E ++L   +PRTV+S+ +QV
Sbjct:  508 RSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQV 608          
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.380e-25
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 0
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 101
            R   +IRPL+ EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+ + ATL+V FK E G  +  D E E +LR++ E +V    YPR V+S+ +QV
Sbjct:   12 RLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQV 112          
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: W4FVM2_9STRA (RNase_PH domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FVM2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.390e-24
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 0
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 101
            R   +IRPL+ EQG+LNRADGSARF  G+TSV+A+V GPA AK  R E+ + ATL+V FK + G  +  D E E +LR++ E VV    +PR V+S+ +QV
Sbjct:   15 RLVQEIRPLSCEQGLLNRADGSARFSHGSTSVVASVNGPAAAKNRRQEKVDAATLEVVFKSDKGAPTARDKEYEVILRQTFETVVYLENFPRAVISLTVQV 115          
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.460e-23
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 0
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 101
            R   +IRPL+ EQG+LNRADGSARF  G+TSVLA+V GPA AK  R E+ + AT++V FK + G  +  D E E +L+++ + +V    YPR V+S+ +QV
Sbjct:   14 RLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQV 114          
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: F4PKM7_CAVFA (RNase_PH domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PKM7_CAVFA)

HSP 1 Score: 100 bits (249), Expect = 2.710e-23
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 0
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 101
            R +NQIRP+ +EQ +LN+ADGSA+F QG +SVLAAVYGP   K  R E+   + +DVSF P +G T+  D E E L+R ++E ++L   +PRT ++VI+QV
Sbjct:   89 RLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARKEKISKSVVDVSFTPATGNTTYFDKEREMLVRNAVESIILTLLHPRTQINVIVQV 189          
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A397A2P9_9STRA (RNase_PH domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A2P9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.990e-23
Identity = 51/99 (51.52%), Postives = 70/99 (70.71%), Query Frame = 0
Query:    3 ANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 101
            + +IRPL+ EQG+LNRADGSARF  G+TSV+A+V GPA AK  R E+ + ATL+V FK + G  +  D E E +LR++ E VV    +PR V+S+ +QV
Sbjct:   77 SKEIRPLSCEQGLLNRADGSARFSHGSTSVVASVNGPAAAKNRRQEKVDAATLEVVFKSDKGAPTARDKEYEVILRQTFETVVYLENFPRAVISLTVQV 175          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT2_ECTSI3.170e-5495.05RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A067CJ13_SAPPC1.600e-2655.45Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A835ZF16_9STRA1.790e-2655.45Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A1V9ZII6_9STRA3.270e-2655.45Exosome component Rrp46 n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9ZVY3_9STRA3.170e-2555.45U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]
A0A485KL27_9STRA5.380e-2553.47Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]
W4FVM2_9STRA3.390e-2451.49RNase_PH domain-containing protein n=2 Tax=Aphanom... [more]
A0A024TBK6_9STRA2.460e-2349.50Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
F4PKM7_CAVFA2.710e-2350.50RNase_PH domain-containing protein n=1 Tax=Cavende... [more]
A0A397A2P9_9STRA2.990e-2351.52RNase_PH domain-containing protein n=1 Tax=Aphanom... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001247Exoribonuclease, phosphorolytic domain 1PFAMPF01138RNase_PHcoord: 5..101
e-value: 1.2E-14
score: 54.9
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 1..103
e-value: 2.7E-28
score: 101.0
NoneNo IPR availablePANTHERPTHR11953EXOSOME COMPLEX COMPONENTcoord: 1..102
NoneNo IPR availablePANTHERPTHR11953:SF1EXOSOME COMPLEX COMPONENT RRP46coord: 1..102
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 4..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72913contigEcto-sp13_S_contig72913:6..314 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72913.18445.1mRNA_Ecto-sp13_S_contig72913.18445.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig72913 6..314 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig72913.18445.1 ID=prot_Ecto-sp13_S_contig72913.18445.1|Name=mRNA_Ecto-sp13_S_contig72913.18445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERP
EGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQ
VCT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001247ExoRNase_PH_dom1
IPR027408PNPase/RNase_PH_dom_sf
IPR020568Ribosomal_S5_D2-typ_fold