mRNA_Ecto-sp13_S_contig72913.18445.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72913.18445.1
Unique NamemRNA_Ecto-sp13_S_contig72913.18445.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: D7FVT2_ECTSI (RNase_PH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT2_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 3.170e-54
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 303
            RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAK+LRMER EGATLDVSFKPESG TS ADAESE LLRRSLEEVVLRSRYPRTVVSVIIQV
Sbjct:    9 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEGATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQV 109
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BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A067CJ13_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ13_SAPPC)

HSP 1 Score: 106 bits (265), Expect = 1.600e-26
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 303
            R   +IRPLA EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+  GATL+V+FK E G  S  D E E +LR + E +++   +PR VVS+ +QV
Sbjct:   11 RLVQEIRPLACEQGLLNRADGSARFNHGTTSVLASVSGPAAAKLRRQEKATGATLEVTFKAEKGAPSARDKEYEMILRETFEPIIVLENFPRAVVSITVQV 111
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BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A835ZF16_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF16_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.790e-26
Identity = 56/101 (55.45%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 303
            R  +QIR L A+QGILNRADGS RF  GNTSVL AVYGPA     + E+P+ A ++VS++ + G  + ADAE E  +RR+LEE V  +RYPR+V+SV++QV
Sbjct:   10 RTGDQIRGLFADQGILNRADGSVRFGAGNTSVLVAVYGPAQPAQQKKEKPDRAIIEVSWRADKGAQTSADAERELYVRRTLEEAVAVARYPRSVISVVVQV 110
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BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A1V9ZII6_9STRA (Exosome component Rrp46 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZII6_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.270e-26
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 303
            R   +IRPLA EQG+LNRADGS+RF  G TSVLA+V GPA AK  R E+   ATL+V FKPE G  S  D E E +LR++ E ++L   +PR V+SV +QV
Sbjct:   12 RLVQEIRPLACEQGLLNRADGSSRFNHGTTSVLASVSGPAAAKLRRQEKMHCATLEVVFKPEKGAASARDKEYEMILRQTFEPIILLENFPRAVISVTVQV 112
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BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A1V9ZVY3_9STRA (U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVY3_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.170e-25
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 303
            R   +IRPLA EQG+LNRADGSARF  G TSV+A+V GPAPAK  R E    ATLDV FK E G  +  D E E +LR++ E ++L   +PRTV+S+ +QV
Sbjct:  508 RSVQEIRPLACEQGLLNRADGSARFNHGTTSVMASVSGPAPAKIRRQENVNQATLDVVFKAEKGVATARDKEYELILRQTFEPIILLENFPRTVISITVQV 608
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BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A485KL27_9STRA (Aste57867_8748 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL27_9STRA)

HSP 1 Score: 102 bits (255), Expect = 5.380e-25
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 303
            R   +IRPL+ EQG+LNRADGSARF  G TSVLA+V GPA AK  R E+ + ATL+V FK E G  +  D E E +LR++ E +V    YPR V+S+ +QV
Sbjct:   12 RLVQEIRPLSCEQGLLNRADGSARFSHGTTSVLASVNGPAAAKIRRQEKVDEATLEVVFKAEKGAPTARDKEYEAILRQTFEPIVYLENYPRAVISITVQV 112
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BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: W4FVM2_9STRA (RNase_PH domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FVM2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.390e-24
Identity = 52/101 (51.49%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 303
            R   +IRPL+ EQG+LNRADGSARF  G+TSV+A+V GPA AK  R E+ + ATL+V FK + G  +  D E E +LR++ E VV    +PR V+S+ +QV
Sbjct:   15 RLVQEIRPLSCEQGLLNRADGSARFSHGSTSVVASVNGPAAAKNRRQEKVDAATLEVVFKSDKGAPTARDKEYEVILRQTFETVVYLENFPRAVISLTVQV 115
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BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A024TBK6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TBK6_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.460e-23
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 303
            R   +IRPL+ EQG+LNRADGSARF  G+TSVLA+V GPA AK  R E+ + AT++V FK + G  +  D E E +L+++ + +V    YPR V+S+ +QV
Sbjct:   14 RLVQEIRPLSCEQGLLNRADGSARFCHGSTSVLASVNGPAAAKIRRHEKVDAATVEVVFKSDKGAPTARDKEYEAILKQTFDPIVYVENYPRAVISITVQV 114
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BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: F4PKM7_CAVFA (RNase_PH domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PKM7_CAVFA)

HSP 1 Score: 100 bits (249), Expect = 2.710e-23
Identity = 51/101 (50.50%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 303
            R +NQIRP+ +EQ +LN+ADGSA+F QG +SVLAAVYGP   K  R E+   + +DVSF P +G T+  D E E L+R ++E ++L   +PRT ++VI+QV
Sbjct:   89 RLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARKEKISKSVVDVSFTPATGNTTYFDKEREMLVRNAVESIILTLLHPRTQINVIVQV 189
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BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Match: A0A397A2P9_9STRA (RNase_PH domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A2P9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.990e-23
Identity = 51/99 (51.52%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    7 ANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERPEGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQV 303
            + +IRPL+ EQG+LNRADGSARF  G+TSV+A+V GPA AK  R E+ + ATL+V FK + G  +  D E E +LR++ E VV    +PR V+S+ +QV
Sbjct:   77 SKEIRPLSCEQGLLNRADGSARFSHGSTSVVASVNGPAAAKNRRQEKVDAATLEVVFKSDKGAPTARDKEYEVILRQTFETVVYLENFPRAVISLTVQV 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72913.18445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVT2_ECTSI3.170e-5495.05RNase_PH domain-containing protein n=2 Tax=Ectocar... [more]
A0A067CJ13_SAPPC1.600e-2655.45Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A835ZF16_9STRA1.790e-2655.45Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A1V9ZII6_9STRA3.270e-2655.45Exosome component Rrp46 n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9ZVY3_9STRA3.170e-2555.45U4/U6 small nuclear ribonucleoprotein Prp4 n=1 Tax... [more]
A0A485KL27_9STRA5.380e-2553.47Aste57867_8748 protein n=1 Tax=Aphanomyces stellat... [more]
W4FVM2_9STRA3.390e-2451.49RNase_PH domain-containing protein n=2 Tax=Aphanom... [more]
A0A024TBK6_9STRA2.460e-2349.50Uncharacterized protein n=2 Tax=Aphanomyces TaxID=... [more]
F4PKM7_CAVFA2.710e-2350.50RNase_PH domain-containing protein n=1 Tax=Cavende... [more]
A0A397A2P9_9STRA2.990e-2351.52RNase_PH domain-containing protein n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72913contigEcto-sp13_S_contig72913:6..314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score178.7
Seed ortholog evalue1.4e-42
Seed eggNOG ortholog2880.D7FVT2
Preferred nameEXOSC5
Model size309
KEGG koko:K12590,ko:K12812
KEGG Pathwayko03013,ko03015,ko03018,ko03040,ko05164,map03013,map03015,map03018,map03040,map05164
KEGG ModuleM00391,M00406,M00430
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000737,GO:0000785,GO:0000956,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004536,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006308,GO:0006309,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008219,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012501,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019899,GO:0022411,GO:0022613,GO:0030262,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0042254,GO:0042802,GO:0043085,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051252,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0097194,GO:0098542,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Exons1
EggNOG free text desc.polyadenylation-dependent snoRNA 3'-end processing
EggNOG OGsCOG0689@1,KOG1069@2759
EC3.6.4.13
Cds size309
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.7819257-CDS-Ecto-sp13_S_contig72913:5..3141681463996.7819257-CDS-Ecto-sp13_S_contig72913:5..314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72913 6..314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72913.18445.1prot_Ecto-sp13_S_contig72913.18445.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72913 6..314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72913.18445.1

>prot_Ecto-sp13_S_contig72913.18445.1 ID=prot_Ecto-sp13_S_contig72913.18445.1|Name=mRNA_Ecto-sp13_S_contig72913.18445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
RRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKALRMERP
EGATLDVSFKPESGTTSPADAESETLLRRSLEEVVLRSRYPRTVVSVIIQ
VCT
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mRNA from alignment at Ecto-sp13_S_contig72913:6..314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72913.18445.1 ID=mRNA_Ecto-sp13_S_contig72913.18445.1|Name=mRNA_Ecto-sp13_S_contig72913.18445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72913:6..314+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGGGCCAACCAGATCCGCCCTCTCGCGGCAGAGCAGGGCATCCTCAA
CAGAGCGGACGGCTCCGCTCGCTTCGTGCAGGGCAACACCTCCGTCCTCG
CGGCCGTCTATGGGCCGGCCCCAGCCAAGGCCTTGAGGATGGAGAGGCCA
GAGGGTGCAACGTTAGATGTGAGCTTCAAGCCGGAGAGCGGGACAACGTC
ACCCGCCGATGCGGAATCGGAAACGCTGCTGCGGAGGTCACTGGAGGAGG
TGGTGCTGAGGTCGAGATATCCCAGGACCGTGGTGTCAGTTATCATCCAG
GTGTGCACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72913:6..314+

>mRNA_Ecto-sp13_S_contig72913.18445.1 ID=mRNA_Ecto-sp13_S_contig72913.18445.1|Name=mRNA_Ecto-sp13_S_contig72913.18445.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72913:6..314+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCGGGCCAACCAGATCCGCCCTCTCGCGGCAGAGCAGGGCATCCTCAA
CAGAGCGGACGGCTCCGCTCGCTTCGTGCAGGGCAACACCTCCGTCCTCG
CGGCCGTCTATGGGCCGGCCCCAGCCAAGGCCTTGAGGATGGAGAGGCCA
GAGGGTGCAACGTTAGATGTGAGCTTCAAGCCGGAGAGCGGGACAACGTC
ACCCGCCGATGCGGAATCGGAAACGCTGCTGCGGAGGTCACTGGAGGAGG
TGGTGCTGAGGTCGAGATATCCCAGGACCGTGGTGTCAGTTATCATCCAG
GTGTGCACC
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