mRNA_Ecto-sp13_S_contig7248.18382.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7248.18382.1 vs. uniprot
Match: D8LI31_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI31_ECTSI) HSP 1 Score: 430 bits (1106), Expect = 2.760e-142 Identity = 283/295 (95.93%), Postives = 283/295 (95.93%), Query Frame = 1
Query: 1 QCACDILEWAGPFIKASVEPGGAFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVEPSRKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD---AVRVDGAEPWVGIRRDGVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQASGSGGAVMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGEDDARLTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 876
QCACDILEWAGPFIKASVEPGGAFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVEPS KGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AVRVDGAEPWVGIRRDGVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQ VMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGEDDARLTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV
Sbjct: 369 QCACDILEWAGPFIKASVEPGGAFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVEPSGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRVDGAEPWVGIRRDGVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQ-------VMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGEDDARLTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 656
BLAST of mRNA_Ecto-sp13_S_contig7248.18382.1 vs. uniprot
Match: A0A835YUE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE7_9STRA) HSP 1 Score: 199 bits (507), Expect = 5.910e-55 Identity = 129/273 (47.25%), Postives = 154/273 (56.41%), Query Frame = 1
Query: 58 PGGAFEGYRVHCAGHSFGGAVAACLAGLLDGAIDVEPSRKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAVRVDGAEPWVGIRRDGVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQASGSGGAVMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGEDDARLTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 876
P GA G V GHSF GAVAA AGLLDGA+ VE XXXXXXX X + +VG R V CVT GCPPC+S LP VTSFVLGDDMVPR S +SL +LKRRL Q V+P+G G Q +A T+LFTDVAGVA QG+RQ + G DD+ L VPG VWF KPRRL+ GAT+ + G +++D+LWQ+HD+MLTKSMLSHH L +Y+ +LDRV
Sbjct: 252 PAGA--GATVLFVGHSFAGAVAAVAAGLLDGALAVEGG-----------GGSXXXXXXXSGRRSEGKVGSAEARCKGGSSRRAKGVAEGGDGGMXXXXXXXXSGGYVGAARGRVKCVTFGCPPCVSGAAALPCVTSFVLGDDMVPRVSAQSLEQLKRRLRQ-------VLPRGSGFFGQSLAMGTTLFTDVAGVAAQGLRQRSAAGGDDSALIVPGTVWFVKPRRLRAGATMTKSRSGALRDDVLWQMHDVMLTKSMLSHHSLARYVAVLDRV 504
BLAST of mRNA_Ecto-sp13_S_contig7248.18382.1 vs. uniprot
Match: A0A4D9DDN3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDN3_9STRA) HSP 1 Score: 132 bits (331), Expect = 9.910e-30 Identity = 117/283 (41.34%), Postives = 155/283 (54.77%), Query Frame = 1
Query: 79 YRVHCAGHSFGGAVAACLAGLLDGAIDVE------PSRKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAVRVDGAEPWVGIRRDGVTCVTLGCPPCLSQNLR--LPFVTSFVLGDDMVPRTSHESLRRLKRRLLQASGSGGAVMPKGKGLLSQGVAF--STSLFTDVAGVAMQGV--RQATTLGEDDAR-----LTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 876
Y +H G S GG+V A +AG+LDG I VE P+R+ XXXXXXXXXXXXXXXXXXXXX A + GA G+ D VT PC+S+N+R F TSF+LGDDM+PR + S++RL++RLL G A G+ F + S V G +Q V Q T E++ L +PGRV++ KPR+L GAT+K VMRGN++ED+LW++HDI +++SML HH LDKYI +L R+
Sbjct: 327 YALHVVGFSLGGSVGALVAGVLDGTIFVEGAVPAPPTRRSHTRRGRAARAGVAVPEEGEXXXXXXXXXXXXXXXXXXXXXSSTSSW---------AHALRGA---TGLAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDAT----------GIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGVEALILPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWKIHDIFVSQSMLKHHSLDKYITVLARI 587
BLAST of mRNA_Ecto-sp13_S_contig7248.18382.1 vs. uniprot
Match: A0A7S2LJY6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LJY6_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.830e-22 Identity = 68/177 (38.42%), Postives = 103/177 (58.19%), Query Frame = 1
Query: 364 AEPWVGIRRDGVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQASGSGGAVMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGEDDARLTVPGRVWFAKPRRLKNGATLKRVMRG------NVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 876
A W G RD V+ + LGCPPC+S + + FVTS + GDD+VPR+S+ +L+RL R + S GG ++ KG G +S D A + + G+ ++ + DA L VPGRV+ +PRR+ G++ + G N + +LWQL+D++L+KS+ HH YI+ LDRV
Sbjct: 372 ATRWSGFARDRVSALCLGCPPCMS-GIEVDFVTSVINGDDIVPRSSYRTLQRLYGRT-ERSIKGG-ILGKGVGWMS-----------DAARLTVTGLTSGSSK-KKDAHLAVPGRVYLIRPRRIGGGSSSIHEVGGSIGGRENFRAAVLWQLNDVLLSKSLWKHHSQSSYIRSLDRV 533
BLAST of mRNA_Ecto-sp13_S_contig7248.18382.1 vs. uniprot
Match: A0A7S2S0W5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S0W5_9STRA) HSP 1 Score: 100 bits (250), Expect = 2.060e-21 Identity = 66/173 (38.15%), Postives = 96/173 (55.49%), Query Frame = 1
Query: 379 GIRRDGVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQASGSGGAVMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGE-DDARLTVPGRVWFAKPRRLKNGATLKRVMRG-NVKED-----MLWQLHDIMLTKSMLSHHRLDKYIKILDRV 876
G + + V LG PPCLS N++ +VTS V GDD+V RT+ +S+ RL RR ++A K L+Q A+ TD + M +R E ++A+L +PG+V+ KPRR + +L +V N K +LWQL+DI+L+ SM +HH L YI+ LDRV
Sbjct: 4 GFGKGRTSAVVLGPPPCLSPNVKASYVTSLVHGDDIVCRTTPQSMDRLYRRTVRAYN-------KNNNPLTQSFAW----MTDTLSLTMSNIRTYAHGSEGEEAKLALPGQVYIIKPRRYHHACSLHQVGGDINAKHQAWRAALLWQLNDILLSSSMWTHHSLPAYIQALDRV 165
BLAST of mRNA_Ecto-sp13_S_contig7248.18382.1 vs. uniprot
Match: A0A7S1B8E3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B8E3_9STRA) HSP 1 Score: 106 bits (264), Expect = 5.150e-21 Identity = 69/160 (43.12%), Postives = 96/160 (60.00%), Query Frame = 1
Query: 397 VTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQASGSGGAVMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGEDDARLTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 876
+T + LG PP LS + PF++S + GDD++PRTS+ S+ RL R+ Q+S S G + G A STS V G+ G R A GE+ R++VPG+ + KPRRL +GA++ V GNV+ ++LWQLHD+ L+ M H LD YI LDRV
Sbjct: 384 ITGMLLGPPPILSPLVACPFLSSVLYGDDILPRTSNRSMSRLYGRI-QSSRSTGHKLLSAVGASWVSAAVSTS----VDGI---GKRVAGREGEE-FRMSVPGKAFVVKPRRLDHGASMYEVEEGNVRAEVLWQLHDVPLSIKMWRHGTLDSYIHGLDRV 534
BLAST of mRNA_Ecto-sp13_S_contig7248.18382.1 vs. uniprot
Match: A0A7S1UN44_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UN44_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 7.700e-20 Identity = 63/172 (36.63%), Postives = 93/172 (54.07%), Query Frame = 1
Query: 379 GIRRDGVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQASGSGGAVMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGE-DDARLTVPGRVWFAKPRRLKNGATLKRVM-----RGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 876
G R + V LG PPC+S NL+ FV S V GDD+V RT+HES+ RL R ++ KG G L + V + +D + +R E ++ RL+V G+ + +PRRL ++ V R ++E +LWQL+D++L+ S+ HH+LD YI LDRV
Sbjct: 52 GFGRGRASAVALGPPPCISSNLKAAFVKSIVYGDDVVCRTTHESIERLLSRTKRSM--------KG-GFLGRQVGW----MSDTMSLTATSLRSHAQGSEGEEGRLSVAGQAYLVRPRRLGGTCSIHEVGSQKGGREALREKLLWQLNDVLLSDSLWKHHQLDSYIHGLDRV 210
BLAST of mRNA_Ecto-sp13_S_contig7248.18382.1 vs. uniprot
Match: A0A7S3ZRK4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRK4_9STRA) HSP 1 Score: 102 bits (253), Expect = 8.490e-20 Identity = 72/172 (41.86%), Postives = 100/172 (58.14%), Query Frame = 1
Query: 397 VTCVTLGCPPCLSQNL------RLPFVTSFVLGDDMVPRTSHESLRRLKRRL---LQASGSGGAVMPKGKGLLSQGVAFSTSLFTDVAGVAMQGV--RQATTLGEDDARLTVPGRVWFAKPRRLKNGAT-LKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 876
+ CV++GC PCLS R T+ +LGDD + R S +LRRL++RL L AS +GGA+ G + G A + S F G A + V Q T L +DD L +PG V+F KPR +GA + R G +E++LWQL+D++L+KSML+H LD YI LDR+
Sbjct: 305 IRCVSVGCAPCLSAKAARSWDPRRARCTTVLLGDDCIGRCSPSALRRLRKRLRRFLPAS-AGGAL-----GAVRLGAALAGSAFEQGMGAAGRAVTDEQRTKLTDDD-ELRLPGDVFFLKPR--ADGAVGVYRGGAGRAREELLWQLNDVLLSKSMLAHATLDAYISALDRI 467
BLAST of mRNA_Ecto-sp13_S_contig7248.18382.1 vs. uniprot
Match: A0A7S0C3U1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3U1_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 3.680e-19 Identity = 62/180 (34.44%), Postives = 95/180 (52.78%), Query Frame = 1
Query: 379 GIRRDGVTCVTLGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQASGSGGAVMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGE-DDARLTVPGRVWFAKPRRLKNGATL-------------KRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 876
G R + TLG PPCLS N+R +VTS + GDD+VPRT SL RL RL + KG G+L + V S TD + + G++ + E ++ RL + G+ + +PRRL G++ + ++ +LWQL+D++L+KS+ +HH L YI+ LDR+
Sbjct: 133 GFGRGRTSAFTLGAPPCLSPNVRAGYVTSLMYGDDVVPRTQRASLDRLCTRLQKQL--------KG-GVLQKTVGKSVGWMTDAVSLTVSGLKTHSHGSEGEETRLALVGKTYLIRPRRLGGGSSACGKISSFHEIGSTTHSAKDALRASVLWQLNDVLLSKSLWNHHALPSYIEGLDRL 303
BLAST of mRNA_Ecto-sp13_S_contig7248.18382.1 vs. uniprot
Match: A0A6T5V5A5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A6T5V5A5_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.030e-18 Identity = 61/160 (38.12%), Postives = 88/160 (55.00%), Query Frame = 1
Query: 412 LGCPPCLSQNLRLPFVTSFVLGDDMVPRTSHESLRRLKRRLLQASGSGGAVMPKGKGLLSQGVAFSTSLFTDVAGVAMQGVRQATTLGE-DDARLTVPGRVWFAKPRRLKNGATLKRVM----RGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 876
+G PP LS N+R FVTS + GDD++ RT+ +SL RL R+ +A G + K G +S D + M ++ E ++ +L++PG +F KPRRL +L V G ++ +LWQL DI+L+KSM HH LD YI+ LDRV
Sbjct: 397 IGSPPVLSPNVRAAFVTSLIHGDDIICRTTKDSLDRLNNRMEKALSRG--MFTKNIGWVS-----------DAVSLTMTNLKNHARGSEGEETKLSIPGTKYFVKPRRLGGACSLHHVGDISGTGAIRASVLWQLDDILLSKSMWDHHGLDNYIQALDRV 543 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7248.18382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7248.18382.1 >prot_Ecto-sp13_S_contig7248.18382.1 ID=prot_Ecto-sp13_S_contig7248.18382.1|Name=mRNA_Ecto-sp13_S_contig7248.18382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp MVPRTSHESLRRLKRRLLQASGSGGAVMPKGKGLLSQGVAFSTSLFTDVAback to top mRNA from alignment at Ecto-sp13_S_contig7248:4818..7308- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7248.18382.1 ID=mRNA_Ecto-sp13_S_contig7248.18382.1|Name=mRNA_Ecto-sp13_S_contig7248.18382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2491bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7248:4818..7308- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7248:4818..7308- >mRNA_Ecto-sp13_S_contig7248.18382.1 ID=mRNA_Ecto-sp13_S_contig7248.18382.1|Name=mRNA_Ecto-sp13_S_contig7248.18382.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7248:4818..7308- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |