mRNA_Ecto-sp13_S_contig7248.18381.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7248.18381.1
Unique NamemRNA_Ecto-sp13_S_contig7248.18381.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7248.18381.1 vs. uniprot
Match: D8LI32_ECTSI (GRIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI32_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.700e-5
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 2 
Query:  332 SSRVQSWRQAYQKQVKETEVLKREGGDTAL 421
            + + +SWRQAYQKQVKETEVLKREGGDTAL
Sbjct:  231 TDKEESWRQAYQKQVKETEVLKREGGDTAL 260
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7248.18381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI32_ECTSI3.700e-583.33GRIP domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7248contigEcto-sp13_S_contig7248:105..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size424
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463992.3311696-CDS-Ecto-sp13_S_contig7248:104..5271681463992.3311696-CDS-Ecto-sp13_S_contig7248:104..527Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7248 105..527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7248.18381.1prot_Ecto-sp13_S_contig7248.18381.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7248 105..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7248.18381.1

>prot_Ecto-sp13_S_contig7248.18381.1 ID=prot_Ecto-sp13_S_contig7248.18381.1|Name=mRNA_Ecto-sp13_S_contig7248.18381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
VSRAVFVFWAQVAWTYYARPPEFCDGCFGRYRYRCRCPISRCTSVSISDW
STSTTSKTCEYHRQPYPPHSPICRPSRIEPPAVFVFCSFFVFWSISLVPR
VLDHCCCCLLLLASAELETGVPETGKGDRGAQERGGRHRAC
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mRNA from alignment at Ecto-sp13_S_contig7248:105..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7248.18381.1 ID=mRNA_Ecto-sp13_S_contig7248.18381.1|Name=mRNA_Ecto-sp13_S_contig7248.18381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=424bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7248:105..528+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCTCGCGCGGTGTTTGTTTTTTGGGCGCAAGTTGCTTGGACGTATTA
CGCTCGACCACCCGAGTTTTGTGATGGTTGTTTTGGTCGGTATCGTTACC
GCTGTCGTTGTCCTATATCAAGGTGCACTTCTGTTTCTATCTCTGATTGG
TCCACCTCAACGACGTCGAAGACGTGTGAATACCACCGCCAACCGTATCC
CCCCCACTCCCCAATATGTCGGCCGTCTCGCATTGAACCGCCCGCTGTTT
TTGTTTTTTGTTCATTTTTTGTCTTTTGGTCCATCTCGCTTGTGCCACGT
GTGCTGGACCACTGTTGTTGCTGCCTCCTCCTCCTCGCGAGTGCAGAGCT
GGAGACAGGCGTACCAGAAACAGGTAAAGGAGACAGAGGTGCTCAAGAGA
GAGGGGGGCGACACCGCGCTTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7248:105..528+

>mRNA_Ecto-sp13_S_contig7248.18381.1 ID=mRNA_Ecto-sp13_S_contig7248.18381.1|Name=mRNA_Ecto-sp13_S_contig7248.18381.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7248:105..528+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTCTCGCGCGGTGTTTGTTTTTTGGGCGCAAGTTGCTTGGACGTATTA
CGCTCGACCACCCGAGTTTTGTGATGGTTGTTTTGGTCGGTATCGTTACC
GCTGTCGTTGTCCTATATCAAGGTGCACTTCTGTTTCTATCTCTGATTGG
TCCACCTCAACGACGTCGAAGACGTGTGAATACCACCGCCAACCGTATCC
CCCCCACTCCCCAATATGTCGGCCGTCTCGCATTGAACCGCCCGCTGTTT
TTGTTTTTTGTTCATTTTTTGTCTTTTGGTCCATCTCGCTTGTGCCACGT
GTGCTGGACCACTGTTGTTGCTGCCTCCTCCTCCTCGCGAGTGCAGAGCT
GGAGACAGGCGTACCAGAAACAGGTAAAGGAGACAGAGGTGCTCAAGAGA
GAGGGGGGCGACACCGCGCTTGC
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