mRNA_Ecto-sp13_S_contig72319.18362.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72319.18362.1
Unique NamemRNA_Ecto-sp13_S_contig72319.18362.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig72319.18362.1 vs. uniprot
Match: A0A6H5L6Q6_9PHAE (Calx-beta domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Q6_9PHAE)

HSP 1 Score: 384 bits (986), Expect = 7.230e-120
Identity = 197/208 (94.71%), Postives = 203/208 (97.60%), Query Frame = 1
Query:    1 VAFTPGAFAGVGPTVVLSTYAAGEVGTANVSFITSNPIPSDGHVIITFPSNFTSVDCSVALASGMDGGLVTHVSGYTVDVERDGFGSPVESGAEVSMSLVDCVTNQLFEGESDSFPVLKTTLNDTRISIDEASSAHNSEDRPAGASFTPGAFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPGEFSSINCSQVMATGI 624
            V FTPGAFAGVGPTVVLSTYAAGEVGTANVSFITSNPIPSDGHVIITFPSNFTSVDCSVALASGMDGGLV++VSGYTVDVERDGFGSPVESGAEVS+SLVDCV NQLFEGESDSFPVLKTTLNDT IS+DEASSAHNSEDRPAG SFTPGAFSEPPTVELDSLVAGHEGGANVT+ALSNPLPADGNIFIEFP EFSSINCSQV+ATGI
Sbjct:  326 VTFTPGAFAGVGPTVVLSTYAAGEVGTANVSFITSNPIPSDGHVIITFPSNFTSVDCSVALASGMDGGLVSNVSGYTVDVERDGFGSPVESGAEVSVSLVDCVKNQLFEGESDSFPVLKTTLNDTSISVDEASSAHNSEDRPAGVSFTPGAFSEPPTVELDSLVAGHEGGANVTVALSNPLPADGNIFIEFPSEFSSINCSQVVATGI 533          
BLAST of mRNA_Ecto-sp13_S_contig72319.18362.1 vs. uniprot
Match: D7G5B0_ECTSI (Laminin IV type A domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B0_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 6.850e-115
Identity = 191/208 (91.83%), Postives = 196/208 (94.23%), Query Frame = 1
Query:    1 VAFTPGAFAGVGPTVVLSTYAAGEVGTANVSFITSNPIPSDGHVIITFPSNFTSVDCSVALASGMDGGLVTHVSGYTVDVERDGFGSPVESGAEVSMSLVDCVTNQLFEGESDSFPVLKTTLNDTRISIDEASSAHNSEDRPAGASFTPGAFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPGEFSSINCSQVMATGI 624
            V FTPGAFAGVGPTVVLS YAAGEVGTANVSFITSNPIPSDGHVIITFPSNFTSVDCSVALASGMDGGLV++VSGYTVDVERDGFGS VE G EVS+SLVDCV NQLFEGESDSFPVLKTTLNDT IS+DEASSAHNSEDRPA   FTPGAFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFP EFSSINCS V+ATGI
Sbjct: 1167 VTFTPGAFAGVGPTVVLSAYAAGEVGTANVSFITSNPIPSDGHVIITFPSNFTSVDCSVALASGMDGGLVSNVSGYTVDVERDGFGSAVEPGTEVSVSLVDCVKNQLFEGESDSFPVLKTTLNDTGISVDEASSAHNSEDRPAAVLFTPGAFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPSEFSSINCSHVVATGI 1374          
BLAST of mRNA_Ecto-sp13_S_contig72319.18362.1 vs. uniprot
Match: A0A2D6N2R1_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2D6N2R1_9CHLR)

HSP 1 Score: 105 bits (263), Expect = 8.460e-23
Identity = 70/187 (37.43%), Postives = 98/187 (52.41%), Query Frame = 1
Query:   64 AGEVGTANVSFITSNPIPSDGHVIITFPSNFTSVDCSVALASGMDGGLVTHVSGYTVDVERDGFGSPVESGAEVSMSLVDCVTNQLFEGESDSFPVLKTTLNDTRISIDEASSAHNSEDRPAGASFTPGAFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPGEFSSINCSQVMATGI 624
            AG  G  +VSF T NPIPSDG V++TFPS F+    + A +S + GGL T VSG TV ++RD  GS V +   VS+++   V N +  G + ++ +  TT + T  SID A         PA  +   GA +        +  +  +  A  +  L+NP PADG + I FP EFS    S   ATG+
Sbjct:  603 AGATGNVSVSFTTDNPIPSDGGVVVTFPSGFSLTGVNSATSSTIGGGLTTSVSGQTVTIQRDNTGSQVAADTAVSLTVAS-VQNPVVSGTTGTYTL--TTQDSTGASIDTAI--------PAATAIVTGALTSAGLALSTTAPSMPDAVATFSFTLANPWPADGKLVIVFPAEFSLTVFSVAAATGL 778          
BLAST of mRNA_Ecto-sp13_S_contig72319.18362.1 vs. uniprot
Match: A0A432JG40_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A432JG40_9CHLR)

HSP 1 Score: 79.3 bits (194), Expect = 7.820e-14
Identity = 66/188 (35.11%), Postives = 94/188 (50.00%), Query Frame = 1
Query:   73 VGTANVSFITSNPIPSDGHVIITFPSNFTSVDCSVALASG-----MDGGLVTHVSGYTVDVERDGFGSPVESGAEVSMSLVDCVTNQLFEGESDSFPVLKTTLNDTRISIDEASSAHNSEDRPAGASFTPGA--FSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPGEFSSINCSQVMA 615
            +G   V+FI S+P+P+DG + ITFPS F  ++   A A G      DG     VSG    + R G G  +++   V+++L   + N    G S S+ +  TT  DT + +D A        RP     TPG   F++   VE  SLVA   G   V+   +NPLP +G+I I FP  F  I  S+VM+
Sbjct:    1 MGDVGVTFIISDPLPTDGKIAITFPSGFR-LNSGSATAMGDDGASFDGTTSVSVSGQIATITRVGDGDSIDADTVVTLTLTS-IKNPPVSGSSKSYIIKTTTSLDTTLDVDTAV-------RPD--IITPGVLGFTD---VEPASLVAKAVGRVTVSFTTANPLPGNGDIVITFPSGFGLIG-SEVMS 173          
BLAST of mRNA_Ecto-sp13_S_contig72319.18362.1 vs. uniprot
Match: A0A2A5FEC8_9CHLR (Uncharacterized protein n=5 Tax=Chloroflexi TaxID=200795 RepID=A0A2A5FEC8_9CHLR)

HSP 1 Score: 77.4 bits (189), Expect = 4.590e-13
Identity = 65/183 (35.52%), Postives = 92/183 (50.27%), Query Frame = 1
Query:   88 VSFITSNPIPSDGHVIITFPSNFTSVDCSVALASG-----MDGGLVTHVSGYTVDVERDGFGSPVESGAEVSMSLVDCVTNQLFEGESDSFPVLKTTLNDTRISIDEASSAHNSEDRPAGASFTPGA--FSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPGEFSSINCSQVMA 615
            V+FI S+P+P+DG + ITFPS F  ++   A A G      DG     VSG    + R G G  +++   V+++L   + N    G S S+ +  TT  DT + +D A        RP     TPG   F++   VE  SLVA   G   V+   +NPLP +G+I I FP  F  I  S+VM+
Sbjct:    3 VTFIISDPLPTDGKIAITFPSGFR-LNSGSATAMGDDGASFDGTTSVSVSGQIATITRVGDGDSIDADTVVTLTLTS-IKNPPVSGSSKSYIIKTTTSLDTTLDVDTAV-------RPD--IITPGVLGFTD---VEPASLVAKAVGRVTVSFTTANPLPGNGDIVITFPSGFGLIG-SEVMS 170          
BLAST of mRNA_Ecto-sp13_S_contig72319.18362.1 vs. uniprot
Match: A0A2D6N2H7_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2D6N2H7_9CHLR)

HSP 1 Score: 70.5 bits (171), Expect = 1.270e-10
Identity = 58/199 (29.15%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   43 VVLSTYAAGEVGT-ANVSFITSNPIPSDGHVIITFPSNFTSVDCSVA---LASGM-DGGLVTHVSGYTVDVERDGFGSPVESGAEVSMSLVDCVTNQLFEGESDSFPVLKTTLNDTRISIDEASSAHNSEDRPAGASFTPGAFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPGEFSSINCSQVMATGI 624
            + L++  AG  G      F T+  +PSDG +++TFPS F+    S     L SG+ DG      SG  + + R G G  + +G  + + ++  VTN +    + +  +   T + T +    A             + TPG+ S   TV   SLVAG  G   V+    NP+PADG + I FP  FS    +   ++ I
Sbjct:   50 LTLTSTTAGATGVNVTTQFTTATTLPSDGKIVMTFPSGFSLAAASFGNSLLISGVSDGHFGITASGQVLTLSRLGNGDDIPAGTSLIV-IMGSVTNPVVTASNITISIATQTGSGTELDTGSAQ-----------VTITPGSLSNA-TVTPASLVAGATGNVAVSFTTDNPIPADGRMEIAFPSGFSLTGVNSATSSTI 235          
BLAST of mRNA_Ecto-sp13_S_contig72319.18362.1 vs. uniprot
Match: A0A7C1HG43_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C1HG43_9BACT)

HSP 1 Score: 59.3 bits (142), Expect = 9.780e-7
Identity = 39/121 (32.23%), Postives = 61/121 (50.41%), Query Frame = 1
Query:   43 VVLSTYAAGEVGTANVSFITSNPIPSDGHVIITFPSNFTSVDCSVALASGMDGGLVTHVSGYTVDVERDGFGSPVESGAEVSMSLVDCVTNQLFEGESDSFPVLKTTLNDTRISIDEASSA 405
            + L     G+     VSF  ++ IPSDG +++ +PS F     S+  ++ +DGGL    +G ++  +R+G GSP  +GAE     V  VTN+   G    F V+ TT       I+  +SA
Sbjct:   34 ITLDDATVGQRSIHTVSFNHADTIPSDGRIVVRYPSGFDLSTVSIVSSATLDGGLSVTSAGDSLIAQRNGTGSPATAGAETIQFAV--VTNRAASGN---FQVIVTTREADNTPIERGTSA 149          
BLAST of mRNA_Ecto-sp13_S_contig72319.18362.1 vs. uniprot
Match: A0A7S0HF82_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HF82_9CRYP)

HSP 1 Score: 54.7 bits (130), Expect = 3.710e-5
Identity = 41/136 (30.15%), Postives = 69/136 (50.74%), Query Frame = 1
Query:   31 VGPTVVLSTYAAGEVGTANVSFITSNPIPSDGHVIIT-------------FPSNFTSVDCSVALASG-MDGGLVTHVSGYTVDVERDGFGSPVESGAEVSMSLVDCVTNQLFEGESDSFPVLKTTLNDTRISIDEA 396
            V PT+ LS+Y AGEV  A ++FI SN + +DG + +              +P +    D +   A G +DG   T++    + V+R G G  V +G+ +  ++ + V  QL+EG + S  V  TTL +    +D++
Sbjct: 4444 VRPTISLSSYGAGEVVEATLTFILSNSLEADGRIYLALYRDFSLSPSSQIYPVSLLGSDLAAHAAPGILDGNFSTYMRANVLRVQRQGNGRDVPAGSILQFNISNVVV-QLYEGGTGSAMV--TTLTNANQEVDQS 4576          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72319.18362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L6Q6_9PHAE7.230e-12094.71Calx-beta domain-containing protein n=1 Tax=Ectoca... [more]
D7G5B0_ECTSI6.850e-11591.83Laminin IV type A domain-containing protein n=1 Ta... [more]
A0A2D6N2R1_9CHLR8.460e-2337.43Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
A0A432JG40_9CHLR7.820e-1435.11Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A2A5FEC8_9CHLR4.590e-1335.52Uncharacterized protein n=5 Tax=Chloroflexi TaxID=... [more]
A0A2D6N2H7_9CHLR1.270e-1029.15Uncharacterized protein (Fragment) n=1 Tax=Dehaloc... [more]
A0A7C1HG43_9BACT9.780e-732.23Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
A0A7S0HF82_9CRYP3.710e-530.15Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72319contigEcto-sp13_S_contig72319:4..627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score373.6
Seed ortholog evalue5.9e-101
Seed eggNOG ortholog2880.D7G5B0
Model size624
KEGG koko:K05849
KEGG TC2.A.19.3
KEGG Pathwayko04020,ko04022,ko04371,ko04740,ko04974,map04020,map04022,map04371,map04740,map04974
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.calcium:sodium antiporter activity
EggNOG OGsKOG1306@1,KOG1306@2759
Cds size624
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463990.881415-CDS-Ecto-sp13_S_contig72319:3..6271681463990.881415-CDS-Ecto-sp13_S_contig72319:3..627Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72319 4..627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72319.18362.1prot_Ecto-sp13_S_contig72319.18362.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72319 4..627 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72319.18362.1

>prot_Ecto-sp13_S_contig72319.18362.1 ID=prot_Ecto-sp13_S_contig72319.18362.1|Name=mRNA_Ecto-sp13_S_contig72319.18362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
VAFTPGAFAGVGPTVVLSTYAAGEVGTANVSFITSNPIPSDGHVIITFPS
NFTSVDCSVALASGMDGGLVTHVSGYTVDVERDGFGSPVESGAEVSMSLV
DCVTNQLFEGESDSFPVLKTTLNDTRISIDEASSAHNSEDRPAGASFTPG
AFSEPPTVELDSLVAGHEGGANVTLALSNPLPADGNIFIEFPGEFSSINC
SQVMATGI
back to top

mRNA from alignment at Ecto-sp13_S_contig72319:4..627-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72319.18362.1 ID=mRNA_Ecto-sp13_S_contig72319.18362.1|Name=mRNA_Ecto-sp13_S_contig72319.18362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72319:4..627- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGTTCACCCCAGGGGCGTTTGCGGGCGTCGGTCCCACTGTTGTACT CTCGACCTACGCCGCCGGCGAAGTTGGCACCGCCAACGTCAGCTTCATCA CGTCGAATCCGATTCCAAGTGACGGGCACGTCATCATCACCTTCCCATCA AACTTCACGAGCGTGGACTGTTCAGTGGCTCTCGCGTCGGGTATGGACGG CGGTCTCGTTACGCATGTATCCGGATACACCGTGGACGTGGAGCGCGACG GATTTGGTTCTCCAGTGGAATCGGGGGCCGAGGTGTCTATGAGCTTGGTC GATTGCGTGACGAACCAGCTGTTTGAGGGCGAGAGCGACTCCTTTCCCGT CCTGAAAACGACACTCAACGACACCCGTATATCCATCGACGAGGCGAGCT CTGCACACAACTCGGAGGATCGACCAGCGGGGGCGTCGTTCACGCCGGGA GCATTCTCGGAGCCACCAACGGTCGAGTTGGACAGCCTTGTGGCGGGTCA CGAGGGCGGAGCGAACGTCACTCTCGCATTGTCGAACCCCTTGCCGGCTG ATGGGAACATATTCATCGAGTTTCCAGGTGAGTTCTCTTCCATCAACTGT AGCCAGGTTATGGCCACGGGCATC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72319:4..627-

>mRNA_Ecto-sp13_S_contig72319.18362.1 ID=mRNA_Ecto-sp13_S_contig72319.18362.1|Name=mRNA_Ecto-sp13_S_contig72319.18362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72319:4..627- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCGTTCACCCCAGGGGCGTTTGCGGGCGTCGGTCCCACTGTTGTACT
CTCGACCTACGCCGCCGGCGAAGTTGGCACCGCCAACGTCAGCTTCATCA
CGTCGAATCCGATTCCAAGTGACGGGCACGTCATCATCACCTTCCCATCA
AACTTCACGAGCGTGGACTGTTCAGTGGCTCTCGCGTCGGGTATGGACGG
CGGTCTCGTTACGCATGTATCCGGATACACCGTGGACGTGGAGCGCGACG
GATTTGGTTCTCCAGTGGAATCGGGGGCCGAGGTGTCTATGAGCTTGGTC
GATTGCGTGACGAACCAGCTGTTTGAGGGCGAGAGCGACTCCTTTCCCGT
CCTGAAAACGACACTCAACGACACCCGTATATCCATCGACGAGGCGAGCT
CTGCACACAACTCGGAGGATCGACCAGCGGGGGCGTCGTTCACGCCGGGA
GCATTCTCGGAGCCACCAACGGTCGAGTTGGACAGCCTTGTGGCGGGTCA
CGAGGGCGGAGCGAACGTCACTCTCGCATTGTCGAACCCCTTGCCGGCTG
ATGGGAACATATTCATCGAGTTTCCAGGTGAGTTCTCTTCCATCAACTGT
AGCCAGGTTATGGCCACGGGCATC
back to top