mRNA_Ecto-sp13_S_contig7214.18338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7214.18338.1
Unique NamemRNA_Ecto-sp13_S_contig7214.18338.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7214.18338.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 1.050e-76
Identity = 163/175 (93.14%), Postives = 163/175 (93.14%), Query Frame = -1 
Query:    7 FWASRGGVPPRLELLPSHSRGHDGALAGVDESSADEATVAAGRHDSPSVRRRKSGDARSPGVEEPAGTRASGDGATSEAPEAGAVAAAAEPGVAADITXXXXXXXXXXXXXXDGDENASAAAHRQVGSGRWDEHLQAVTRAAWLGSKQASSRGFNSNASSVSAASASNAPTTPIA 531
            FWASRGGVPPRLELLPSHS GHDGALA VDESSADE T AAGRHDSPSVRRRKSGDA SPGVEE AGTRASGD   SEAPEAGAVAAAAEPGVAADITXXXXXXXXXXXXXXDGDENASAAAHRQVGSGRWDEHLQAVTRAAWLGSKQASSRGFNSNASSVSAAS SN PTT IA
Sbjct: 2804 FWASRGGVPPRLELLPSHSHGHDGALADVDESSADEGTAAAGRHDSPSVRRRKSGDASSPGVEERAGTRASGDCTASEAPEAGAVAAAAEPGVAADITXXXXXXXXXXXXXXDGDENASAAAHRQVGSGRWDEHLQAVTRAAWLGSKQASSRGFNSNASSVSAASTSNDPTTRIA 2978
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BLAST of mRNA_Ecto-sp13_S_contig7214.18338.1 vs. uniprot
Match: A0A6H5KJB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB8_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 5.080e-71
Identity = 131/161 (81.37%), Postives = 134/161 (83.23%), Query Frame = -1 
Query:   49 FWASRGGVPPRLELLPSHSRGHDGALAGVDESSADEATVAAGRHDSPSVRRRKSGDARSPGVEEPAGTRASGDGATSEAPEAGAVAAAAEPGVAADITXXXXXXXXXXXXXXDGDENASAAAHRQVGSGRWDEHLQAVTRAAWLGSKQASSRGFNSNASSV 531
            FWASRGGVPPRLELLPSHS GHDGALA VDESSADE T AAGRHDSPSVR+RK G A S G+EEPA TRASGDG  SEAP+AGA  AAAEPGVAADIT              DGDENASAAAHRQVGSGRWDEHLQAVTRAAWLGSKQASSRGFNSNASSV
Sbjct:  355 FWASRGGVPPRLELLPSHSHGHDGALADVDESSADEGTAAAGRHDSPSVRKRKGGYASSRGMEEPASTRASGDGTASEAPKAGAAVAAAEPGVAADITTAAATAGVDGGGDEDGDENASAAAHRQVGSGRWDEHLQAVTRAAWLGSKQASSRGFNSNASSV 515
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7214.18338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7K0_ECTSI1.050e-7693.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJB8_9PHAE5.080e-7181.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7214contigEcto-sp13_S_contig7214:6466..6996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size532
Hectar predicted targeting categoryother localisation
Exons1
Cds size531
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.2443163-CDS-Ecto-sp13_S_contig7214:6465..69961681463988.2443163-CDS-Ecto-sp13_S_contig7214:6465..6996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7214 6466..6996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7214.18338.1prot_Ecto-sp13_S_contig7214.18338.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7214 6466..6996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7214.18338.1

>prot_Ecto-sp13_S_contig7214.18338.1 ID=prot_Ecto-sp13_S_contig7214.18338.1|Name=mRNA_Ecto-sp13_S_contig7214.18338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
RRCDRSSRRVGRGGCRHRGRVRVEASAAGLLGPEPGRPGDGLQVLVPPAA
TDLPVGGRGGVFVAVLVSSPVITRRRSSSSDICCHARLGGSRHRPRLRGL
AGGTVAARPRSRGFFHPRRTSVTTLSSSYAGAIVAARRHGRLVRRALVNA
GERPVVAAAMARQELEPRWDAAARRPE
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mRNA from alignment at Ecto-sp13_S_contig7214:6466..6996+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7214.18338.1 ID=mRNA_Ecto-sp13_S_contig7214.18338.1|Name=mRNA_Ecto-sp13_S_contig7214.18338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7214:6466..6996+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGTTGCGATCGGAGTAGTCGGCGCGTTGGACGCGGAGGCTGCCGACA
CAGAGGACGCGTTCGAGTTGAAGCCTCGGCTGCTGGCCTGCTTGGACCCG
AGCCAGGCCGCCCGGGTGACGGCCTGCAAGTGCTCGTCCCACCTGCCGCT
ACCGACCTGCCGGTGGGCGGCCGCGGAGGCGTTTTCGTCGCCGTCTTGGT
CTCCTCCCCCGTCATCACCCGCCGCCGCAGCAGCAGTAGTGATATCTGCT
GCCACGCCAGGCTCGGCGGCAGCCGCCACCGCCCCCGCCTCCGGGGCCTC
GCTGGTGGCACCGTCGCCGCTCGCCCGCGTTCCCGCGGGTTCTTCCACCC
CCGGCGAACGAGCGTCACCACTCTTTCTTCTTCGTACGCTGGGGCTATCG
TGGCGGCCCGCCGCCACGGTCGCCTCGTCCGCCGAGCTCTCGTCAACGCC
GGCGAGCGCCCCGTCGTGGCCGCGGCTATGGCTCGGCAAGAGCTCGAGCC
GAGGTGGGACGCCGCCGCGAGACGCCCAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7214:6466..6996+

>mRNA_Ecto-sp13_S_contig7214.18338.1 ID=mRNA_Ecto-sp13_S_contig7214.18338.1|Name=mRNA_Ecto-sp13_S_contig7214.18338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7214:6466..6996+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGTTGCGATCGGAGTAGTCGGCGCGTTGGACGCGGAGGCTGCCGACA
CAGAGGACGCGTTCGAGTTGAAGCCTCGGCTGCTGGCCTGCTTGGACCCG
AGCCAGGCCGCCCGGGTGACGGCCTGCAAGTGCTCGTCCCACCTGCCGCT
ACCGACCTGCCGGTGGGCGGCCGCGGAGGCGTTTTCGTCGCCGTCTTGGT
CTCCTCCCCCGTCATCACCCGCCGCCGCAGCAGCAGTAGTGATATCTGCT
GCCACGCCAGGCTCGGCGGCAGCCGCCACCGCCCCCGCCTCCGGGGCCTC
GCTGGTGGCACCGTCGCCGCTCGCCCGCGTTCCCGCGGGTTCTTCCACCC
CCGGCGAACGAGCGTCACCACTCTTTCTTCTTCGTACGCTGGGGCTATCG
TGGCGGCCCGCCGCCACGGTCGCCTCGTCCGCCGAGCTCTCGTCAACGCC
GGCGAGCGCCCCGTCGTGGCCGCGGCTATGGCTCGGCAAGAGCTCGAGCC
GAGGTGGGACGCCGCCGCGAGACGCCCAGAA
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