mRNA_Ecto-sp13_S_contig72.18318.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72.18318.1
Unique NamemRNA_Ecto-sp13_S_contig72.18318.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72.18318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72contigEcto-sp13_S_contig72:32697..39795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size132
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_001370.1
Cds size132
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463986.4762628-CDS-Ecto-sp13_S_contig72:32696..327681681463986.4762628-CDS-Ecto-sp13_S_contig72:32696..32768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72 32697..32768 +
1681463986.4949973-CDS-Ecto-sp13_S_contig72:39735..397951681463986.4949973-CDS-Ecto-sp13_S_contig72:39735..39795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72 39736..39795 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72.18318.1prot_Ecto-sp13_S_contig72.18318.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72 32697..39795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72.18318.1

>prot_Ecto-sp13_S_contig72.18318.1 ID=prot_Ecto-sp13_S_contig72.18318.1|Name=mRNA_Ecto-sp13_S_contig72.18318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
MPAAQQMYDHTFHPDGARGRSRRWSTSNTAVPPGFCTACCKMR*
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mRNA from alignment at Ecto-sp13_S_contig72:32697..39795+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72.18318.1 ID=mRNA_Ecto-sp13_S_contig72.18318.1|Name=mRNA_Ecto-sp13_S_contig72.18318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7099bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72:32697..39795+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGCAGCTCAGCAAATGTATGACCATACTTTTCATCCTGACGGGGC
AAGAGGGCGGAGCAGGCGTTGGGTGCAAGTGGGGAGGGTGATTGGGTGCA
TCAAGAAAACAGAACGATGAGCACAGAAGCAGCCACTAGCCGTTCGACGG
TGTACAAATAAACTTGCCTGTAGTCTGGTAGTTTGATACTGCAGGGCACG
GGCACTCTGGAAGCTGTGTGATTTCACCAAGTCGACCAAAAGACCGTGCG
GTCTCGCGTCGATAGCGGCACTGAGTTGAACAGGAGGAAAAATGAAGAGA
ATTCGGGTAGCACCCTAAGTAACGAGAGAAACTAACAACCCTCATCCGCA
CGTACAGGTTAATCATGTCGCCTGCTGTCCAATCCATTCGCACCGCAGAA
ATGGTAGAGTTGGCATCCGGAGAAAATAAAGCCCGTTTCGGGTAGAGATG
GGCACCGTATAAAAAAAACGGTTATGCCCGTTTGAATGGGAACCCCGTAG
GCGTCCGTCGGTTACGGTTATAAAAAAAAAACTCGAGGAATTCAAAAGGG
AGGATTTTTTAAGCGGTAAATACCCGGCTAACCGGTAAACTGGTGCTAAG
AGAACGGCTTGAGTGCCGTTTCTTTATTAGAGTAGCGCCTCCTAGCCAGT
ATTTTGCATTCTTGTTGTTCCCTTCCGGTGCCCATCTCTTCTCTGGTACT
ACGACAGTATATGGTGCGTGTGAATATCTGCACAAAACACCGGCTGAACA
TGGACTGGGTGGTTGAAATACGGGCGTGTATGCCACGAAGCCACCAGACC
CAGTTCTGAGATACTGTGGAGGCGTTTCCTTATTCCAACCGAAAAAACCC
GGATATGTCGGTACATGATTTTGAGAACAACGCCTCCTAGCAGGTTATCG
GTTATTGTTTTTTCACGTCCGGTGCCCATCTCTAGTTTCGGGTCGAGGCT
CCTCTTGTTACTTCGTTGCCACCGTCGAGCACAGGATATTTGTAGTGGAG
ATCTAAGAGCAAGGATTAGGACCCCGCCCCCTGATGGCGTGGCGGCCAGA
ATATGACGGATGGTTGTGGAGACGAAGAAGTAAGGATGAGATGGACATTC
GACGGGTGTTTCGAGCTATCTTGGTGCTCTCGAAGAGGGTGAAGAGGGTG
GGCCACTTGCTGCCCAACAGCGAAGTTGAGGAGAAATGAACAATTGATAG
TAACAGACGCATACAAGGAATTAGATTTGCCACTTTTCAACAAGACTTTT
TTGTGCGAAAGCTTGCAAAATTTCCGCCTGCACACCCTGCTTAGTAATTA
CATTCTAACATGAAGGAACGTCTTATGGGAAAAGCTGAGAAGATAGCTAA
TTCGTTTTGGTGATAGAACACCGAAAACTCCACCACATCAGTGATCACCA
TCCGCCGAGGCACGGCCAGAGAAAGAGGGAAATAAGTCCCTGCCTGTGGG
CGTGTTCAGGCGCCAAAGAGAAAAAAGGCTTGTCCATCGTGTTGTTAGAA
ACGCTGGGTGGGGCAACTTTGACAAAGAACAGCCGCAATGTCGGAGCACA
TCTACTGTGTATGCTCATAGGCGCCATTGGTGAACAAGAATAAAGCGCCC
CCGCACCAGATAGGCAAAAAGAAAACAACGGTGTAAAGAAGGTGTCCCAA
CAAAGGGAGGATCACCAATGCCGAGTATGTCATAGACAGTGGTTCTCTTT
CGCCAGAGGGCGAAAGGTGTCGAAATATAGCGCTGAAGATGTCGAATCGA
CCACGCACACATACCATTCATGTCATCAAGATAGTTTTATAATTTGTAGG
AATGTCATCGTACGTCGTTCCACTAGAAAATAGCGAGGAACTTTTCTACA
CAATTTCTGAGTGCTTTTCGATCACATTGAAGATAGGAATGTACCATAAT
CGCGGTCTGCGGTGATACTAGAACAGCGACTACGCGATTCACACAGCCTC
CCCCTGCGGTACAGCAGTTAAGCGCCCTTCTAAATGTGTCATTGCAGGTA
ACGGCTGATATCCTCACAACAAAGGTTGTCTTGCGAGCTTCCATGTGGTG
TGCACAAATCACAAACAAGATCGGCGTCTGGGGAAAAGCCAACGAAATGC
ACGATACACGCTGTTGTGTGATAGACACAACCTCCAGCTGCGCAGCAAAC
AGGTGTTGCATCCGTATACGTGGGAGACACTGCAGGTCGCGGTGACGTAT
GGACCGTGAAAACAGAACTCGTTGACGTGCACGGCAGCAAGACATGTATA
TGCACTTCTGTCCCAAGCACATCGGCCTCAAGGATTTCCACAGCTAAGGG
TAGGTCCAAAAGAAAAAATCAGATCTCGAAATCACTTTCGATACAAGACT
AAAAGAGTCGGATCCACCCAAATCCGGACAGAAATGGCCTGTGTGTCTGA
ACGGGAGATGTGCAAAGTAGAAACGAATCTCTGCAGTCCACCGCGAACAA
CCCGAGAGGTCCGCCGCTTGCCGACTGCAAGATTGCTGTCGTGACGTACT
GATATGACTTGGCCAAATCACATGGGGAGCTATTGCTCCCGAGAAGCACA
CACCAAACGCGTGCATGGCCTCTGTGTGGTACTGACATGATGTTTATGCA
TGTGAGACTTTGAATCGAGCCTCGTCCGACGGAAAGCCACCAATTCATCT
CAGTATTTGAGGTTCGACAACCCACGGAAGATTGCCCCACAGACCAACAC
ATCCCACACACTTTTTTTTCGGCGCCAGTCACGTGCGACAAAGATGCACA
GTCACCCTCCCTTTGGGTTGGCTTTTTGTGCTCCCTCTCTCCTCTATGCT
CGGCGGCGGATGGAGTTCGTGTGGATGGGGGTAGATGGGCACGCGCCGTG
CATGCGAGTAGACCGTGGTCCCGCAACTATGAAGGCGATTCACCCAAATC
GTGATCCGACTAAATGATTTGATCTTTTTTCAAATCCCGATTTGGTTTTG
GGTCGTCCTGTTTGAAGTCCCAAAGATTCAACGGGTTCCATAACATTTCA
GCTAATCAAAGAGAGAGTTTTGTGGATCTTCCGGTCATATAACCAAATCT
GAATGTGATTTCGTGAACTGATTTCTTCGTTAAGACCTACCCTAACACCG
CCCGCGGCGCGATATACACAGCCTCCACTTCTGTGTGATGCACCATGTGC
TTACGAACGCAGATTGTTGTCTCACATGTTCGGTACTATTACGTAATATC
ACTTGATGGACCACCGTCTTGGAACTTCAGGTGAAACATGTAAGTTACGT
TACGTACGTGAACTGCACGCGTGCATACCCTAGCTGGCGGACTACATATG
AAACACGTTGATTTCTAAGCATAAATGTCTGAAGCAGCAGCCATACATCA
CGTTTCCGCCCCTCAAAGTTGTTTCTCAACCTTTTCTTCATTCCTCCAGC
CCGCTCGCGCATCCAGCCCGCTCGCTCATCGTACTAGTTTTCGTTCCCAT
CTCTTTTCTTGCGCGGTTCGCTTTCGACTACGTTTTCAGTCTACGTGCTA
GTGCGTACGCGTACATTGCGGCGTTGCAAAAGCTCTTCTGCCCGATGTAA
AGGAGGCATTTGCAAATGTCCCGAAAATCCTCCCTGTCCACACAGGAGGT
GTCTTGTGCCATAGGGCATGATACTGTAGTACCTTCTCAACCGCGAAAGC
CCAGACGTCAGGTTTCTCGAAGCGCGCACACTGCCGTCTTCTGTCTCGGT
CGTGCATACTTCCACCTTACAAACAGTCGATGAGCTCCTCCATTAAACTG
TTGGTCTACTCGCTGTACAAGCCTACCCGCTGCTTTCGCCTTGCGATTCG
GGCCCCGCCGTCCACTGGGGGCGGAGGGGCCTTTATTGCCCTACTTCTAG
TTATTAAACCCCCCACGAAGAAGAACAAAACGAACAATAACAGCGAAGGG
AAGAAGAACTCGATCATGCCCTAGAAAACGCTGAAGAAAAACTGAGAGGC
ATACGTCGCAGAAAGGTTGGAAACCACACGTTGTAGTTGTATCTCTTTCA
TGAAGCATGATAACACTACAGAAAGACTGCTTGTGAAAAAACTGTGATTG
TGGTGTCTACATGCGAGCGACAATACATGCGAAGCTCAACTTCGGGAACG
ACGAAGGCAATGGAAAGGTTAGGCAGAAGGGGTTACCCATGGTCTCGGCC
TCATCCATGAAATTCTCGCCCGGCTTGGATGGAAAATCAGCGTCGAATGT
ATTTGTAGACATATGAAAAGCAAATACAAACTACAGGGTCCCGTTCGTGC
AATCGAGGGGAAGGGCCAAGCGAGGAGAAAACAAGATACCCTCAAATCGA
TCATCACCTGCAAAACGCGTAGTATACCGTGGGGTTGCCACGGGAAGGAA
CGGGATGAAAAAGAAAAATACAATATTTTCCCTCTGACTACATAGAATAT
AGAAGATTCTCTGCTACCTACGGGTAGCAAGTTCACTTGTACGTCGGACT
TGCCAACAGGAGAGGACGGCGTACGAGACTGTATACATTTATTCTGCGTT
CCTACACAAAACCCCATGTGTAGCTGGGTGGTGATAGGCTGCTACGAGAC
CCTGCGTTCCGAAGCAGCTATGTCGCATGTGTCAGTACGGATGGCGTGTT
ACCGGAACGTATCCTGTGCGTGTTAAGGACAAGCGCTTAATCTGATTTGT
GCTCTGTGCGCTGCATGCATGGAACATACTGTAGGTACAGCCGTACATGC
ACGTATATTCTTCTCTTCGAAAAAATGGAGCCTGGATATTGGTACGGGAG
AGACGCGATAGTCTTGTGTAACCGTAGAACGTGTACAGCAGTGTTGCGCG
ATGGAAAGGTCTCCGCGTAGACCCTTCACACATGAACGGCACTGACAAGT
CGTGCCAAGCACATGACAGGGTAAATGGCCGTGGATGTTCATCAGCGGCA
ACGCTGTCTGTGTTGTAGCGGGCGAGGTCCGCGGTGTTCAGCGTTGCCGG
TTGGTCGTAGGAATAGCATCTCTCTTTTTCATTGACGATGGTGACAGCAC
CACACGAAGGTTGCACAGACATAAGACTACGCCAGCATGAGGATTGCAAG
CTTCTCCCCGATAAATTAAAAACCTGCAGCTCACATGTCGGGAAGCGTTA
TACGAGACCCGCGAGTCTCGTTTTAAAAACATGACCCTGAGGACAAAACA
CTACCATCCCCGGGGTATCGTATAAAAGACGAAATCCCGGGGACACAATA
CAGCCATCCCCGGGGTATCGTGTAAAAGACGATACCCCGGGGACAAAATA
CAGCCATCCCCGGGGTATCGTTTATTGAACGGGACCCCCCGGGGACAGTA
CACAGCCATCCCCGGGGTTCCCGCACCAGAAAAAGTGCTTCATTAGGCAG
CGGGCAGCAGCTGATGGGCGGGGTGCGGCGCCCAGACGTACATCCACTTC
GCTGAGTGTTGGAGCGTTGCGGACAGTACCTCAACTGGGTAGGGAGCCTT
TGATAGCAGCAAGCAGTGTCGGACTTTGCCCGCGAGCGCAAGGCCGTTGC
TACCTGCTGCTCGGGAGTCTTCCGAAATATGTGCGATGTCAGAAAAAAAG
CCAACGGCCGGTTGCGTGCAGCGAGACAGACAGCAGTCCATACATTAGTT
AACAGTGTTGTAGAGCAAGCCTGAGGATGGATGAGGCTTGGACGGCTGGC
ACCGCCTACTGATGCTTAGCTCGTGTGTGCGCTGATATTTTGTTCTGCTC
CCGTCCGTGTGGTGCACATGTTCTACCGCTCTACCTGTTTGGTAACCACA
CATACGTACGTCACGTTGCGGCAGGCAGCGATTCCGCTGCATGTATTATT
GAGTGTTGTTGTTGCTGGGACCATGCTTTCGGCGATTCTGCGATTCTTCT
CCCAGGCACCGTTCCTCGTAGGTGAACCAACGCCACATGTCTAGTGCTGC
TGGTACCAATTGCCAACCTACGTAGTTTAAGTCGCTCTCTCTACACATCT
CCCTCCGCCTGTGTTTGTGTCCGTGAAGCGGGAAGGCTCTACAACTTGAT
GGTTGGACTTCTACTGTCTCGCTGCACGCAACCGACACGCAACCGGCCGT
TGGCTTTCTTGACATCGCCATTTTTCGGAAGACTCCCGAGCAGCAGGTAG
CAACGGCCTTGCCCTCGCGGGCACAGTCCGACACTGCTTGCTGCTATCAA
AGGCTCCCTACCCAGTGAGGTACTGTCCGCAACGCTCCAACACTCAGCGA
AGTGGATGTATGTCTGGGCGCCGCGCCCCGCCCATCAGCTGCTGCCCGCT
GCCTAATGAAGCACTAATTCTGGTGCGGAAACCCCGGGGATGGCTGTCCC
GTTTAATAACGATACCCCGGGAACGGCTGTATTGTGTCCCCGGGGTCTCG
TTTTATATACGATACCCCGGGGGTGGTAGTGTTTTGTCCCCGGGGTTATG
TTTTACAAACGAGACTCGCGGGTCTCGTATAACGCTTCCCCTCACATGTC
ACTGGCCCATTTTGCCGGTCCATCTTACAGTCGATTGTCGGTGTTTGTTT
TTATTATTAGCATCGACCGTGCTAACCGGCTGACCAATGAAAAGACGTCA
GTCTTAGTGCGATTGAAAACACAAAACACTTCTATCTACCATGAACTGGG
ACCCCGTGAGTGTTTGTTTGTGTTCTCCGGCGGAATCAGGATTAGGAGAT
CCGCCGCGCCCAAAACACTTGGGCGACAGCCATATGTATACTCTCGCATT
GGACGACACCGACAAAACGCGCATCGCAGCTCCACGCGGACCTCACATAG
GACGCAGCTAGGCCGGGTTGTCGCCACAGGAAACTGACGTGTGACACGTT
GCCCAGATATGTGGGAAAAATAATATCGACCCTTGTCGACCTCAGGTGTC
CGTACAACTTCAAACACTTGCTTCGCGAACGGACGTGTTGTAGATAAGTC
TGGACTAAGATAGGTTGATGGCCGACTCGCCGACCGATGTCAGTATCATG
TTCTCAGGCTACCCATAGCTTGATGGCCGCTAAAAATGGAAGATAAACAG
GACAAAACCCTTGTGAACGTTCGTGCGCTTACCCTCGAGTCTACATCGAA
CACAGCGGTGCCTCCCGGCTTTTGCACCGCTTGCTGCAAGATGAGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72:32697..39795+

>mRNA_Ecto-sp13_S_contig72.18318.1 ID=mRNA_Ecto-sp13_S_contig72.18318.1|Name=mRNA_Ecto-sp13_S_contig72.18318.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72:32697..39795+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGCAGCTCAGCAAATGTATGACCATACTTTTCATCCTGACGGGGC
AAGAGGGCGGAGCAGGCGTTGGTCTACATCGAACACAGCGGTGCCTCCCG
GCTTTTGCACCGCTTGCTGCAAGATGAGATAA
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