mRNA_Ecto-sp13_S_contig719.18305.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig719.18305.1
Unique NamemRNA_Ecto-sp13_S_contig719.18305.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig719.18305.1 vs. uniprot
Match: D8LME7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME7_ECTSI)

HSP 1 Score: 438 bits (1126), Expect = 5.660e-146
Identity = 226/245 (92.24%), Postives = 230/245 (93.88%), Query Frame = 3
Query:  366 NMKGSNWSILSKIPKGLGLVSAAVIGRRIPALQCVLRAGADPNTPDGVGCNALQVACFDDDDERRLCIVRELLKWGPNPNLRGSPYRSALHTTAKEGHTNLFTTLLTAAPAMLNLVDEQGLTPLGTATSFGQHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLLSGKALEVVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEGDETRKFWARTRVSEDYSGKCMLHFAAVFTSLSA 1100
            NMKG NWSILSKIPKGLGLVSAAVI RRIPALQCVLRAGADPNTPDGVGCNALQVACFD DDERRLCIVRELLKWG NPNLRG PY SALHT AKEGHTNLFTTLL AAPA LNLV+EQGLTPLGTATSFG+HKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLL GK LE VGGLDSIPDAMGCAVTKSRTRTLNLLLSVEG+E R FWARTRVS+DYSGKCMLHFAA FTSLSA
Sbjct:    2 NMKG-NWSILSKIPKGLGLVSAAVIVRRIPALQCVLRAGADPNTPDGVGCNALQVACFDGDDERRLCIVRELLKWGANPNLRGGPYGSALHTAAKEGHTNLFTTLLAAAPATLNLVNEQGLTPLGTATSFGRHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLL-GKGLEAVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEGEERRTFWARTRVSDDYSGKCMLHFAAEFTSLSA 244          
BLAST of mRNA_Ecto-sp13_S_contig719.18305.1 vs. uniprot
Match: A0A6H5JUZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ9_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 7.790e-74
Identity = 147/215 (68.37%), Postives = 149/215 (69.30%), Query Frame = 3
Query:  369 MKGSNWSILSKIPKGLGLVSAAVIGRRIPALQCVLRAGADPNTPDGVGCNALQVACFDDDDERRLCIVRELLKWGPNPNLRGSPYRSALHTTAKEGHTNLFTTLLTAAPAMLNLVDEQGLTPLGTATSFGQHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLLSGKALEVVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEGDETR 1013
            MK  NWS  SKI KGLGLVSAAVIGRRIPALQCVLRAGADPNTPDG                                                + +TNLFTTLL AAPA LNLVDEQGLTPL TATSFGQHKAVTCLLS GASDRQVFQETRSGSLQEAV AGHDTLL LLL GK  E VGGLDSIPDAMGCAVTKSRTRTLNLLLSVEG E R
Sbjct:    1 MKDRNWST-SKILKGLGLVSAAVIGRRIPALQCVLRAGADPNTPDG------------------------------------------------QRNTNLFTTLLAAAPARLNLVDEQGLTPLETATSFGQHKAVTCLLSPGASDRQVFQETRSGSLQEAV-AGHDTLLPLLLFGKGFEAVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEGGEAR 165          
BLAST of mRNA_Ecto-sp13_S_contig719.18305.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 7.350e-44
Identity = 115/306 (37.58%), Postives = 160/306 (52.29%), Query Frame = 3
Query:  393 LSKIPKGLGLVSAAVIGRRIPALQCVLRAGADPNTPDGVGCNALQVACFDDDD---ERRLCIVRELLKWGPNPNLRGSPYRSALHTTAKEGHTNLFTTLLTAAPAMLNLVDEQGLTPLGTATSFGQHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLLSGKALEVVGGLDSIPDAMGCAVT--KSRTRTLNLLLSVEGDETRKFWARTRVSEDYSGKCMLHFAAVFTSLSAVKLLLAAGADEAAVDINGALPRDVIGTAQPEFGPPTERDPTKEAAIARVLKCGPAFRARSWAWPA 1295
            L  + KG+  +  A+    +   + +L+AGADP++ +G G   L + C  +D    E+R  + RE               ++AL   A    TNL   LL  AP  LN     GLTPL  A   G+ KAV+ LLS GA       E     L  AV   H  ++ +LL+ + ++ +GG D IP A+G A +  K R   + +LLS EG E    WAR R  ED     +LH A  F ++SA ++LLAAGADE A + +G   R+V+G   P      +RDP K+ AI R+L+ GPA+RARSWAWPA
Sbjct:  183 LEVLGKGVRALHVAINHYNVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTNLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMKAIGGADVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDP----VLHSAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSL----QRDPAKKGAIVRMLERGPAYRARSWAWPA 480          
BLAST of mRNA_Ecto-sp13_S_contig719.18305.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 3.150e-42
Identity = 114/306 (37.25%), Postives = 158/306 (51.63%), Query Frame = 3
Query:  393 LSKIPKGLGLVSAAVIGRRIPALQCVLRAGADPNTPDGVGCNALQVACFDDDD---ERRLCIVRELLKWGPNPNLRGSPYRSALHTTAKEGHTNLFTTLLTAAPAMLNLVDEQGLTPLGTATSFGQHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLLSGKALEVVGGLDSIPDAMGCAVT--KSRTRTLNLLLSVEGDETRKFWARTRVSEDYSGKCMLHFAAVFTSLSAVKLLLAAGADEAAVDINGALPRDVIGTAQPEFGPPTERDPTKEAAIARVLKCGPAFRARSWAWPA 1295
            L  + KG+  +  A+    +   + +L+AGADP++ +G G   L + C  +D    E+R  + RE               ++AL   A    T+L   LL  AP  LN     GLTPL  A   G+ KAV+ LLS GA       E     L  AV   H  ++ +LL+ + +E + G D IP A+G A +  K R   + +LLS EG E    WAR R  ED     +LH A  F ++SA ++LLAAGADE A + +G   R+V+G   P      +RDP K+ AI R+L  GPA+RARSWAWPA
Sbjct:  191 LEVLGKGVRALHVAINHYHVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTDLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMEAIDGPDVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWARCRYKEDP----VLHCAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSL----QRDPAKKGAIVRMLARGPAYRARSWAWPA 488          
BLAST of mRNA_Ecto-sp13_S_contig719.18305.1 vs. uniprot
Match: D8LSK4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSK4_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 6.320e-42
Identity = 109/286 (38.11%), Postives = 161/286 (56.29%), Query Frame = 3
Query:  450 IPALQCVLRAGADPNTPDGVGCNALQVAC-FDDDDERRLCIVRELLKWGPNPNLRGSPYRSALHTTAKEGHTNLFTTLLTAAP-AMLNLVDEQGLTPLGTATSFGQHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLLSGKALEVVGGLDSI-PDAMGCAVTKSRTRTLNLLLSVEGDETRKFWARTRVSEDYSGKCMLHFAAVFTSLSAVKLLLAAGADEAAVDINGALPRDVIGTAQPEFGPPTERDPTKEAAIARVLKCGPAFRARSWAWPAG 1298
            + AL+ +++AGAD N  +  GC  L +AC  D +   R+ + RELLK G +  L  +  R+ALH  A  G+  L   LL+    + LNL  + G TPL  A  F     V+ LLS GAS R + +       + A   G++++L +L S + ++ VGG  ++ P+++ CA  + + R L LLL+ EG E ++ WAR R+     G+ +++ AA +  L+ VK+LLAAGADE   D +G    +VIG   P        DP + AAI R L+ GPA+RARSWAWP G
Sbjct:   95 LDALRELIKAGADLNGRNYQGCTPLMMACRVDKEGAERVELARELLKAGVDTTLVDADGRAALHYAAYSGNEALIQALLSKGSLSTLNLATQDGKTPLCVAVEFVHCGVVSLLLSAGASQRGLQEGNYPCPFRSAAALGYESILRILCSERGMDAVGGGAAVLPNSLACATRRGKARILRLLLAAEGQERQEHWARRRL---VLGRPLVYLAAAYGILANVKVLLAAGADETETDPDGYAAPEVIGGQLPSG----TLDPLEAAAIGRELQRGPAYRARSWAWPVG 373          
BLAST of mRNA_Ecto-sp13_S_contig719.18305.1 vs. uniprot
Match: D8LME6_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME6_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 2.490e-38
Identity = 127/354 (35.88%), Postives = 179/354 (50.56%), Query Frame = 3
Query:  405 PKGLGLVSAAV-IGRRIPALQCVLRAGADPNTPDGVGCNALQVACFDDDDERRLCIVRELLKWGPNPNLRGSPYRSALHTTAKEGHTNLFTTLLTAAPAMLNLVDEQGLTPLGTATSFGQHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLLSG-KALEVVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEGDETRKFWART------RVSEDYSGKCMLHFAAVFTSLSAVKLLLAAGADEAAVDINGALPRDVIGTAQPEFGPPTERDPTKEAAIARVLKCGPAFRARSWAWPAGLFSEPREGYNSAMMIPSSKLRVCAVGVLLTWSRSR-VFTTCFARYAEK 1439
            P G   + AAV  G  +  ++ +L  GA+P+  D  GC AL  AC   D + RL +VRELL+ G     +     S  H  A +G   L   LL+ APAM+N V++   TP+  A S GQ KAV+ L+S GASD  V    R GSL  A+  G   ++ +LLS  +AL+  GG D I  AM  A+ + +  +L LL+SV G +TR +W+        R+S++      L  A  +  + + KLLL AGADE    +    P D++G          +RD  K A I RVL+  PAFRARSW WP    + P +  +      ++ L     G  + W   R  FT  F +YA+K
Sbjct:   80 PVGSNALHAAVSFGVEVGMIRVLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKAVSFLVSAGASDEAVLSHER-GSLFMALCRGFTNVVRVLLSSPEALKAAGGYDEIRHAMCWAMQQGQPESLRLLISV-GGKTR-YWSNQLVLVPGRLSDNQVEVPALQCAVCYQCVESTKLLLEAGADERF--LTNHKPADLLGAVGLLLDA-EDRDLQKAAEIVRVLRRAPAFRARSWRWPGATATPPVDAGSDPGDDAATPL-----GAQIFWPAGRNFFTKRFEKYAKK 422          
BLAST of mRNA_Ecto-sp13_S_contig719.18305.1 vs. uniprot
Match: D7FLL0_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL0_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 8.040e-32
Identity = 101/302 (33.44%), Postives = 156/302 (51.66%), Query Frame = 3
Query:  426 SAAVIGRRIPALQCVLRAGADPNTPDGVGCNALQVACFDDDDERRL-CIVRELLKWGPNPNLRGSPYRSALHTTAKEGHTNLFTTLLTAAPAMLNLVDEQGLTPLGTATSFGQHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLLSGKALEVVGGLDSIPD-AMGCAVTKSRTRTLNLLLSVEGDETRKFWARTRVSEDYS-GKCMLHFAAVFTSLSAVKLLLAAGADEAAVDINGALPRDVIGTAQ---PEFGP-----PTE-RDPTKEAAIARVLKCGPAFRARSWAWPA 1295
            +A    +++  +  +LRAGADP+  + +G   L     ++     L C +  L+K G NP+   +   +A     + G+      +L  +PA L  +   G++ L  A + G    V+CLLSLGA   +         L  A++ GH+ ++ +LL+   L  VGG++   + A+ CA+T+SR + L ++L++ G+E    WA      D+     +LH++  +   ++V  LLAAGA+E A D  G  P DVIGT     P   P     PT  RDP KEA I R ++  PAFRARSWAWPA
Sbjct:   52 AAICFAKKMDLVDLLLRAGADPSAGNKLGITPLMCLAREEPPGPWLECALEVLIKAGVNPDQVDAEGWTAFLHAVEVGNPEKIRRILALSPAALGRIAWDGMSALYVACNEGHLSVVSCLLSLGAKHPRTTIRDHC-PLAVAIIKGHEDIVKILLAN--LSAVGGVELAAEMALTCAITQSRGKILRMMLNITGEENAARWA----DSDWGLAGSLLHYSCGYILPASVSALLAAGANENATDQAGQRPIDVIGTMDLQNPPLSPLHPRTPTRFRDPVKEAEIRRTVERAPAFRARSWAWPA 346          
BLAST of mRNA_Ecto-sp13_S_contig719.18305.1 vs. uniprot
Match: D8LMB2_ECTSI (Ankyrin repeat-containing protein 10_01 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB2_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.560e-31
Identity = 93/262 (35.50%), Postives = 134/262 (51.15%), Query Frame = 3
Query:  558 RLCIVRELLKWGPNPNLRGSPYRSALHTTAKEGHTNLFTTLLTAAPAMLNLVDEQGLTPLGTATSFGQHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLLSGKALEVVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEGDETRKFWARTRVSEDYSGKCM-----------------LHFAAVFTSLSAVKLLLAAGADEAAVDINGALPRDVIGTAQPEFGPPTERDPTKEAAIARVLKCGPAFRARSWAWP 1292
            +L ++  LL+ G  P L       A+H  A    T +   LL+ AP+ LN  D  G +PLG A   G+   ++ LLS GASDR V+      +L EA+  G    +  LL    LE VGGL +I  AM  +V       L +LL+VEG E ++ WA   V   + G  +                 LH+AA + S+ A+++LL+AGAD    D+ G L  D IG+  P+     +R+ + EAA+ ++L+ GPAFR RS AWP
Sbjct:   14 KLEMLHSLLRAGAAPALEIELGALAIHFAAARCETQVVELLLSKAPSTLNNADNHGYSPLGAAALQGRESTLSLLLSAGASDRIVWATKGVSALHEAIGIGKGNSVRFLLEN-GLEAVGGLPAIAGAMAVSVWYGYIDILEMLLNVEGGEKQEVWANQHVYFAHDGSLLRGVPGPTMATKFEWLPILHYAAKYCSIPALRILLSAGADTETCDLKGKLAVDHIGSLLPD----DKRNGSMEAAVQQMLQKGPAFRVRSRAWP 270          
BLAST of mRNA_Ecto-sp13_S_contig719.18305.1 vs. uniprot
Match: D8LMA6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA6_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.050e-19
Identity = 101/363 (27.82%), Postives = 146/363 (40.22%), Query Frame = 3
Query:  381 NWSILSKIPKGLGLVSAAVIGRRIPALQCVLRAGADPNTPDGVGCNALQVACFDDDDERRLC---------IVRELLKWGPNPNLRGSPYRSALHTTAKEGHTNLFTTLLTAAPAMLNLVDEQGLTPLGTATSFGQHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLLSGKALEVVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEGDETRKFWARTRV-------------SEDYS----------GKCMLHFAAVFTSLSAVKLLLAAGADEAAVDINGALPRDVIGTAQPEFGPPTERDPTKEAAIARVLKCGPAFRARSWAWPAGLFSEPREGYNSAMMIPSSKLRVCAV 1373
            NW  L+       L  AA++G+ + A+  +L+ GA+PN+ D  G   + +AC       R C         ++  LLK G +  L       A+H  A    T +   LL+ AP+ LN    +G TPL  A                                                    E VGG  +I DAM  +V       L +LL+VEGDE ++ WA   V             + D+           G  +LH AA + ++ A+++LL+AGA     D  G +  D IG          ER+ + EAA+  +L  GPAFRARSWAWPA +        N+A+  PS  L   +V
Sbjct:   86 NWPYLNGFT---ALHIAAILGK-VRAMLVLLQLGANPNSSDTRGVTPVMMAC----QGVRCCRPSTPNQAEMLNSLLKAGADVELEDGTGLLAIHFAASHCETQVVELLLSKAPSTLNHATHKGFTPLA-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGFEAVGGKPAIADAMRTSVQYGHIDMLTILLNVEGDEKQEVWANQFVYCSHETVDVGLAPARDFPSTHAIMAIAFGCPLLHTAAKYCAIPAIRVLLSAGALAGKADYQGKVAEDAIGVYH------HERNGSVEAAVRALLLKGPAFRARSWAWPATM--------NAALGRPSRNLHPSSV 425          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig719.18305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LME7_ECTSI5.660e-14692.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUZ9_9PHAE7.790e-7468.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSK8_ECTSI7.350e-4437.58Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JSC7_9PHAE3.150e-4237.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSK4_ECTSI6.320e-4238.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LME6_ECTSI2.490e-3835.88Inversin protein alternative isoform n=1 Tax=Ectoc... [more]
D7FLL0_ECTSI8.040e-3233.44Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LMB2_ECTSI3.560e-3135.50Ankyrin repeat-containing protein 10_01 n=1 Tax=Ec... [more]
D8LMA6_ECTSI2.050e-1927.82Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig719contigEcto-sp13_S_contig719:2851..5838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score439.5
Seed ortholog evalue1.5e-120
Seed eggNOG ortholog2880.D8LME7
Model size2287
KEGG koko:K15503
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-05_002490.1
Cds size1074
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.5482204-UTR-Ecto-sp13_S_contig719:2850..32181681463984.5482204-UTR-Ecto-sp13_S_contig719:2850..3218Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig719 2851..3218 +
1681463984.5753608-UTR-Ecto-sp13_S_contig719:4993..58381681463984.5753608-UTR-Ecto-sp13_S_contig719:4993..5838Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig719 4994..5838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.5590653-CDS-Ecto-sp13_S_contig719:3218..42761681463984.5590653-CDS-Ecto-sp13_S_contig719:3218..4276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig719 3219..4276 +
1681463984.567457-CDS-Ecto-sp13_S_contig719:4977..49931681463984.567457-CDS-Ecto-sp13_S_contig719:4977..4993Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig719 4978..4993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig719.18305.1prot_Ecto-sp13_S_contig719.18305.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig719 3219..4993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig719.18305.1

>prot_Ecto-sp13_S_contig719.18305.1 ID=prot_Ecto-sp13_S_contig719.18305.1|Name=mRNA_Ecto-sp13_S_contig719.18305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=358bp
MKGSNWSILSKIPKGLGLVSAAVIGRRIPALQCVLRAGADPNTPDGVGCN
ALQVACFDDDDERRLCIVRELLKWGPNPNLRGSPYRSALHTTAKEGHTNL
FTTLLTAAPAMLNLVDEQGLTPLGTATSFGQHKAVTCLLSLGASDRQVFQ
ETRSGSLQEAVVAGHDTLLSLLLSGKALEVVGGLDSIPDAMGCAVTKSRT
RTLNLLLSVEGDETRKFWARTRVSEDYSGKCMLHFAAVFTSLSAVKLLLA
AGADEAAVDINGALPRDVIGTAQPEFGPPTERDPTKEAAIARVLKCGPAF
RARSWAWPAGLFSEPREGYNSAMMIPSSKLRVCAVGVLLTWSRSRVFTTC
FARYAEK*
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mRNA from alignment at Ecto-sp13_S_contig719:2851..5838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig719.18305.1 ID=mRNA_Ecto-sp13_S_contig719.18305.1|Name=mRNA_Ecto-sp13_S_contig719.18305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2988bp|location=Sequence derived from alignment at Ecto-sp13_S_contig719:2851..5838+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGCACTACACACCTTTTGCTGCCTGGACATCGTACAGCGCCACCTCA GTGTCACATCAACAGCTGGTAAATTGCTAGGGTAGTCGATCAGCGGCGCG CAACCATGCCTAGGTTGACGGCGTCTGAGCAGGTGTTGTTTGCGGCGGTC GTGGGCGGAAACACGACAAGAGTCGGAAAACTCTTGAAGAAGAAAGAGGG CGAATCAGCATCATCAGCAGCGAGTGGTGGTGGAACCGATCGGATAGAAT TGGCAGTAGTACTCCTCGCAGCTCTTCACGGCCACGTAGGAATTATGAAG CTCCCTATGGGAGCGGTGTCGATTTATCGGCTTCTTTTGCTTCATCTTCG GAGTTTTTAAGAACAAACATGAAGGGTAGTAACTGGAGCATCTTGTCTAA GATCCCGAAGGGTTTGGGACTGGTTTCCGCAGCCGTCATCGGGAGAAGAA TTCCCGCTCTGCAATGTGTCCTAAGAGCGGGCGCAGATCCCAACACACCC GATGGGGTAGGTTGTAATGCACTCCAAGTGGCATGCTTCGATGACGACGA TGAACGGCGGTTGTGCATAGTCCGAGAGCTACTGAAGTGGGGTCCAAATC CCAACCTGCGCGGTAGTCCGTATCGGTCAGCGCTGCATACAACAGCAAAG GAAGGCCACACCAACTTGTTCACCACACTCCTCACGGCGGCACCGGCAAT GCTGAACCTCGTCGATGAACAAGGATTGACGCCGTTGGGGACGGCGACGT CATTTGGACAGCACAAGGCGGTGACATGCCTATTATCCCTGGGTGCTAGC GACAGGCAAGTGTTTCAGGAGACTCGTTCGGGCTCGCTCCAAGAAGCTGT TGTCGCCGGCCACGACACTTTATTGTCGTTGCTGCTGTCCGGCAAAGCTT TGGAAGTGGTTGGAGGATTGGACTCGATCCCAGACGCCATGGGGTGCGCA GTGACCAAGAGCAGGACTCGAACACTGAACTTGCTCCTTTCCGTGGAGGG AGACGAGACGCGGAAGTTTTGGGCGAGGACTCGCGTAAGTGAAGACTATT CCGGAAAGTGCATGCTGCACTTCGCCGCCGTATTCACCTCTCTGAGCGCG GTCAAGCTGCTCCTCGCGGCCGGGGCGGACGAAGCAGCGGTGGATATCAA TGGAGCACTTCCGAGGGATGTCATCGGGACAGCCCAACCGGAATTCGGTC CTCCAACAGAGAGGGACCCAACAAAGGAAGCGGCCATCGCCCGGGTGCTA AAGTGCGGCCCAGCGTTCCGCGCTCGATCGTGGGCTTGGCCGGCAGGGCT TTTCTCTGAACCTCGTGAGGGCTATAATTCGGCCATGATGATCCCCTCGT CCAAGCTCAGAGTTTGCGCGGTGGGTGTACTGCTCACCTGGTCGAGGAGC CGAGTCTTCACCACGTGCTTCGCCAGGTGAGGAGGCCAAGGTAGCCAACC TTGTTGGCCCTGCCTGGCACTGTCCGAGAGCACACGATTGCTGCGGTGTA TGACGCAGCTGCAGTTCGGCTGTCTTAAAGTATGGTAGGCCCTCTGTGTG ATGGTAACAAAACGCTTGGCATTGAGTTGCGTGTAGATGTTCTCGAGTTT CAGAGTATTGAGGCTCATCTTCTTGGGGAGATAGCAGACTCTTGCAGGTG GGGCGATATTGCCAATGTATGCTCTGGGGTGATCGTCACGTAATCGCCCC AGATTTATGCCTTTGAACGCTCGCACGTGCTCTTTTCCCCTGTTTTTTCT TTTATGGAAAGTACTGGGCGCATGTATGTCCGCATCTAACGTTTTCCGCG TGTGCGCACGCAAACACTCAATGTTTCAGAGGAGTCACCACGAAAAGAGC TGCTGAGGTGTTGCCCACCTCCACGGCTTCGCGTGCGTTCAACAGAGAAC AAACAAAGCGATATGGGTACGCATCCCGAAGGCGGAGGTGGGCAGAAGGA ACGCGATGAGCAGGGAACTGTTCCCGAGGAATGATGCTAATACTGTTGCG AGAGCCAAGGAAAGTTATACCTGGCAAGGATTATCCTCGGTGCCGCCTCC AACCCATTCCATGCAGCGCAAAGTCCTCGCAACTGACAACCTTGCGTCTT TTTTCCCTTTCACCGGTGCTGCGCCAGATACGCGGAGAAATGAGAGGGAA CACGCTCACAGTCTTGGGCTTGAGCACGCTGAACAGGCTACTACCGCTGC TTTGAACGTGTTGAAAATAGTTCCATGAGCATGATGTTGCATGTTCCCGC TGGCGCTGCTTTGTTTCCGGCCACGGCAGGGTGTAGGAGAGGCTCTTGTC GTTTTACACAGCTACACCCGTGTCCACCTTGCTTTCGGTATGCGTGTTTG AACACGAAGCCGAGGTACCTTGCGTGATTTGAACACGCACTCTGAATGTG ATGAGAACCTGGAGGTTTGACCATCGGTATTTGTTCTTACATAGTGTTGG CTTGGTTGATGTGTTTTGCCTCAAGATCCGAGGTTGTCTACCGAGTATGT ATGATTCGTCGGCATTTGGGTTTTTGCTGCACAATCATGTTTTTAAGTCC ACCGTTGTTACCAATCTAGCCTGTACCAGATAAATTTGCGGCTAGGTAAG AGGAGACATTGGTGAACTTCAGTGGCACGCGTGTCTACAGCAGCAGTGGG TCTGTGTTCTGTGTGTTGTTTGGAGTTCTTGTGGGTGTGGTTGATATGGA GTAGCTTCGCGTGGACGGATCTTTGGCAGATCTAGCTTCGTGCACTTGGT CGCATGGTAAATGATTGTCTCTTGCCCCTCATGTTTGGACATGGCAGGAT GAAACGTTTGATTATACCCTGCGCGTGCTTTTGGAGCATCATGAATTGCA GTATGCAGGCGGGCCTCTGTGGGCGGGCTGGTTTGTATGTTGTGCCGTGG AGGCCAGCGACGTGATGTGTTGTTGTTCCAGGGTGCGTAGTTATTCAAGC ACATGCTCGTTGCGGCACCCGTACGTGTCGGCACCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig719:2851..5838+

>mRNA_Ecto-sp13_S_contig719.18305.1 ID=mRNA_Ecto-sp13_S_contig719.18305.1|Name=mRNA_Ecto-sp13_S_contig719.18305.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig719:2851..5838+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGGTAGTAACTGGAGCATCTTGTCTAAGATCCCGAAGGGTTTGGG
ACTGGTTTCCGCAGCCGTCATCGGGAGAAGAATTCCCGCTCTGCAATGTG
TCCTAAGAGCGGGCGCAGATCCCAACACACCCGATGGGGTAGGTTGTAAT
GCACTCCAAGTGGCATGCTTCGATGACGACGATGAACGGCGGTTGTGCAT
AGTCCGAGAGCTACTGAAGTGGGGTCCAAATCCCAACCTGCGCGGTAGTC
CGTATCGGTCAGCGCTGCATACAACAGCAAAGGAAGGCCACACCAACTTG
TTCACCACACTCCTCACGGCGGCACCGGCAATGCTGAACCTCGTCGATGA
ACAAGGATTGACGCCGTTGGGGACGGCGACGTCATTTGGACAGCACAAGG
CGGTGACATGCCTATTATCCCTGGGTGCTAGCGACAGGCAAGTGTTTCAG
GAGACTCGTTCGGGCTCGCTCCAAGAAGCTGTTGTCGCCGGCCACGACAC
TTTATTGTCGTTGCTGCTGTCCGGCAAAGCTTTGGAAGTGGTTGGAGGAT
TGGACTCGATCCCAGACGCCATGGGGTGCGCAGTGACCAAGAGCAGGACT
CGAACACTGAACTTGCTCCTTTCCGTGGAGGGAGACGAGACGCGGAAGTT
TTGGGCGAGGACTCGCGTAAGTGAAGACTATTCCGGAAAGTGCATGCTGC
ACTTCGCCGCCGTATTCACCTCTCTGAGCGCGGTCAAGCTGCTCCTCGCG
GCCGGGGCGGACGAAGCAGCGGTGGATATCAATGGAGCACTTCCGAGGGA
TGTCATCGGGACAGCCCAACCGGAATTCGGTCCTCCAACAGAGAGGGACC
CAACAAAGGAAGCGGCCATCGCCCGGGTGCTAAAGTGCGGCCCAGCGTTC
CGCGCTCGATCGTGGGCTTGGCCGGCAGGGCTTTTCTCTGAACCTCGTGA
GGGCTATAATTCGGCCATGATGATCCCCTCGTCCAAGCTCAGAGTTTGCG
CGGTGGGTGTACTGCTCACCTGGTCGAGGAGCCGAGTCTTCACCACGTGC
TTCGCCAGATACGCGGAGAAATGA
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