prot_Ecto-sp13_S_contig7174.18287.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7174.18287.1
Unique Nameprot_Ecto-sp13_S_contig7174.18287.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length198
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7174.18287.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.510e-25
Identity = 66/135 (48.89%), Postives = 84/135 (62.22%), Query Frame = 0 
Query:   15 TSATDTDLEGDKSHTSRYTVARNQFLNPYISPATVVACGIRDAEKYGSLQLDKLDTNSFSHSRCGTHVFEKAIGMVRSCAKAVHKTIGTFEKMGQNARALDRKATAGKSGARGASVKKCRMRVVLSDQTPEEREK 149
            T+ATD DL+G+ SH  R+ V R +  NP I+P TVV CGIRDAEKYGSLQ D LD+  FSH+R G  +    +G   SC +   + +    K+   AR    KATA KSGA G + K  + RV+L + TPEEREK
Sbjct: 1054 TTATDADLQGENSHALRFAVKRCRVFNPNIAPVTVVGCGIRDAEKYGSLQRDSLDSKYFSHARIGKKLVPPLMGNA-SCREPAKQAVEASGKLFDVARNGRAKATAEKSGAVGPAAKVRKQRVILLELTPEEREK 1187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7174.18287.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPM1_ECTSI2.510e-2548.89PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7174contigEcto-sp13_S_contig7174:5309..5902 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7174.18287.1mRNA_Ecto-sp13_S_contig7174.18287.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7174 3136..7030 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7174.18287.1 ID=prot_Ecto-sp13_S_contig7174.18287.1|Name=mRNA_Ecto-sp13_S_contig7174.18287.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
MQALSDLGLLAEDVTSATDTDLEGDKSHTSRYTVARNQFLNPYISPATVV
ACGIRDAEKYGSLQLDKLDTNSFSHSRCGTHVFEKAIGMVRSCAKAVHKT
IGTFEKMGQNARALDRKATAGKSGARGASVKKCRMRVVLSDQTPEEREKN
RVYVHSSYVRERVQTPDGRHPETSPPLRRVGERTPREREKSVGRLPV*
back to top