mRNA_Ecto-sp13_S_contig10154.183.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10154.183.1
Unique NamemRNA_Ecto-sp13_S_contig10154.183.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10154.183.1 vs. uniprot
Match: A0A6H5JY91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY91_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 6.670e-18
Identity = 56/108 (51.85%), Postives = 59/108 (54.63%), Query Frame = 2 
Query:    2 AEGAGIVPGAAEGEAKXXXXXXXXXXXXXXXXXXXXXXXXXXXSFCPGRRPLRPVPRRSISLPDRLIPTPSAVTRISGDFASLARANTI--------ADIFDGGNGRG 301
            A+GAG +PGA  GEAK                             CP RRP  P PRRSISLPDRLIPTP+AVT   GDFASLARANTI        A I DGGNGRG
Sbjct:  103 AQGAGNIPGAVAGEAKVGAEVEPSSISGSSATAASTPAAIPP--LCPRRRPXXPGPRRSISLPDRLIPTPAAVT---GDFASLARANTIGHHLPFVTAGIIDGGNGRG 205
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10154.183.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JY91_9PHAE6.670e-1851.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10154contigEcto-sp13_S_contig10154:519..829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462511.3993666-CDS-Ecto-sp13_S_contig10154:518..8271681462511.3993666-CDS-Ecto-sp13_S_contig10154:518..827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10154 519..827 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10154.183.1prot_Ecto-sp13_S_contig10154.183.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10154 519..827 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10154.183.1

>prot_Ecto-sp13_S_contig10154.183.1 ID=prot_Ecto-sp13_S_contig10154.183.1|Name=mRNA_Ecto-sp13_S_contig10154.183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
GGGCRDRSRRRRGGSKDSRRGGILVHLRFLLLRRPRLYPGGPPFFLPRAS
SSSSGAAQEHQPSRPAYPHALCCDQDLRRFRVVGEGQHNRRHFRRRQRQG
TVD
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mRNA from alignment at Ecto-sp13_S_contig10154:519..829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10154.183.1 ID=mRNA_Ecto-sp13_S_contig10154.183.1|Name=mRNA_Ecto-sp13_S_contig10154.183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10154:519..829+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGAGGGTGCAGGGATCGTTCCAGGCGCCGCCGAGGGGGAAGCAAAGA
TTCGCGCAGAGGTGGAATCCTCGTCCATCTCCGGTTCCTCCTCCTCCGCC
GCCCCCGCCTCTACCCCGGTGGCCCTCCCTTCTTTCTGCCCCGGGCGTCG
TCCTCTTCGTCCGGTGCCGCGCAGGAGCATCAGCCTTCCCGACCGGCTTA
TCCCCACGCCCTCTGCTGTGACCAGGATCTCCGGAGATTTCGCGTCGTTG
GCGAGGGCCAACACAATCGCAGACATTTTCGACGGCGGCAACGGCAGGGG
ACAGTAGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10154:519..829+

>mRNA_Ecto-sp13_S_contig10154.183.1 ID=mRNA_Ecto-sp13_S_contig10154.183.1|Name=mRNA_Ecto-sp13_S_contig10154.183.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10154:519..829+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGAGGGTGCAGGGATCGTTCCAGGCGCCGCCGAGGGGGAAGCAAAGA
TTCGCGCAGAGGTGGAATCCTCGTCCATCTCCGGTTCCTCCTCCTCCGCC
GCCCCCGCCTCTACCCCGGTGGCCCTCCCTTCTTTCTGCCCCGGGCGTCG
TCCTCTTCGTCCGGTGCCGCGCAGGAGCATCAGCCTTCCCGACCGGCTTA
TCCCCACGCCCTCTGCTGTGACCAGGATCTCCGGAGATTTCGCGTCGTTG
GCGAGGGCCAACACAATCGCAGACATTTTCGACGGCGGCAACGGCAGGGG
ACAGTAGAT
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