mRNA_Ecto-sp13_S_contig71434.18250.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71434.18250.1
Unique NamemRNA_Ecto-sp13_S_contig71434.18250.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig71434.18250.1 vs. uniprot
Match: A0A6H5KRM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRM3_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 5.500e-33
Identity = 59/93 (63.44%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    1 DFLRAVNEGLVEEVVDRTLDEETLVRVVSGEEDADSEMRRDTRASFEALKKFMEKEKSNRRKTATDGDGYVNFEDKMKRVDDGKGGLVWVRTE 279
            DFL+ V +GLVEE+VDRTL+E+ L+RV+SGEED  ++M++DTRASFEA+KKFM+KE+ +RRKTA   DGY++F D+M RV DGKGG+ WVR +
Sbjct:    5 DFLKDVKDGLVEELVDRTLNEDALLRVISGEEDIGADMQQDTRASFEAVKKFMDKEELSRRKTARGDDGYIDFRDEMTRVTDGKGGMEWVRNK 97
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BLAST of mRNA_Ecto-sp13_S_contig71434.18250.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.860e-31
Identity = 62/93 (66.67%), Postives = 79/93 (84.95%), Query Frame = 1 
Query:    1 DFLRAVNEGLVEEVVDRTLDEETLVRVVSGEEDADSEMRRDTRASFEALKKFMEKEKSNRRKTATDGDGYVNFEDKMKRVDDGKGGLVWVRTE 279
            DFL+ V +GLV E+VD TLDE+ L+R+VSGEED  ++MR+DTRAS+EALKKFM+KE+ +R K A DGDGYV+F DKMKRV DG+GG+VW+R E
Sbjct: 1419 DFLKDVKDGLVGELVDPTLDEDALLRIVSGEEDVGADMRKDTRASYEALKKFMDKEQMDRLKNARDGDGYVDFRDKMKRVADGRGGMVWIRNE 1511
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BLAST of mRNA_Ecto-sp13_S_contig71434.18250.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.190e-30
Identity = 60/93 (64.52%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 DFLRAVNEGLVEEVVDRTLDEETLVRVVSGEEDADSEMRRDTRASFEALKKFMEKEKSNRRKTATDGDGYVNFEDKMKRVDDGKGGLVWVRTE 279
            +FL+ V +GL +E+VDR+LDE+ L+RVVSGEED D++M+ DTRAS+EALKK M+KE+  R K A DGDGY++F DKMKRV DG+GG+VWVR E
Sbjct: 1137 EFLKDVKDGLADELVDRSLDEDALLRVVSGEEDVDADMQNDTRASYEALKKLMDKEQVGRLKNARDGDGYIDFRDKMKRVPDGRGGMVWVRNE 1229
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BLAST of mRNA_Ecto-sp13_S_contig71434.18250.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.030e-29
Identity = 59/92 (64.13%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    4 FLRAVNEGLVEEVVDRTLDEETLVRVVSGEEDADSEMRRDTRASFEALKKFMEKEKSNRRKTATDGDGYVNFEDKMKRVDDGKGGLVWVRTE 279
            FL+ V +GLV E+VDRTLDEE L+R VSG++D  +E++RDTRAS+EALKKFM+KE+ +R K A DGDGY++F D+MKRV DG+GG+VWVR +
Sbjct:  690 FLQDVKDGLVNELVDRTLDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRND 781
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BLAST of mRNA_Ecto-sp13_S_contig71434.18250.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.420e-29
Identity = 58/92 (63.04%), Postives = 78/92 (84.78%), Query Frame = 1 
Query:    4 FLRAVNEGLVEEVVDRTLDEETLVRVVSGEEDADSEMRRDTRASFEALKKFMEKEKSNRRKTATDGDGYVNFEDKMKRVDDGKGGLVWVRTE 279
            FL+ V +GLV E+VDRT+DEE L+R VSG++D  +E++RDTRAS+EALKKFM+KE+ +R K A DGDGY++F D+MKRV DG+GG+VWVR +
Sbjct:  858 FLKDVKDGLVNELVDRTIDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRND 949
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71434.18250.1 vs. uniprot
Match: A0A6H5L1D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D3_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.780e-29
Identity = 58/92 (63.04%), Postives = 77/92 (83.70%), Query Frame = 1 
Query:    4 FLRAVNEGLVEEVVDRTLDEETLVRVVSGEEDADSEMRRDTRASFEALKKFMEKEKSNRRKTATDGDGYVNFEDKMKRVDDGKGGLVWVRTE 279
            FL+ V +GLV E+VDRTLDE  L+R VSG++D  +E++RDTRAS+EALKKFM+KE+ +R K A DGDGY++F D+MKRV DG+GG+VWVR +
Sbjct:  190 FLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRND 280
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71434.18250.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.260e-28
Identity = 57/93 (61.29%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 DFLRAVNEGLVEEVVDRTLDEETLVRVVSGEEDADSEMRRDTRASFEALKKFMEKEKSNRRKTATDGDGYVNFEDKMKRVDDGKGGLVWVRTE 279
            DFL+ V +GLVEE+VDRTLD+E L+R V G+++  ++++RDTRAS+EALKKFM+KE+  R K   DGDGY++F D+MKRV DG+GG+VWVR E
Sbjct: 1204 DFLKDVKDGLVEELVDRTLDDEALLRAVLGDDNIGADLQRDTRASYEALKKFMDKEQIERVKNTRDGDGYIDFRDEMKRVPDGRGGMVWVRNE 1296
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BLAST of mRNA_Ecto-sp13_S_contig71434.18250.1 vs. uniprot
Match: A0A6H5KSY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY4_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.770e-28
Identity = 57/93 (61.29%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 DFLRAVNEGLVEEVVDRTLDEETLVRVVSGEEDADSEMRRDTRASFEALKKFMEKEKSNRRKTATDGDGYVNFEDKMKRVDDGKGGLVWVRTE 279
            DFL+ V +GLVEE+VDRTLDE+ L+R V GE+   ++M+RDTRAS+EALK FME E+  RRK A DGDGY++F ++MKRV +G+GG+VWVR +
Sbjct:  413 DFLKDVKDGLVEELVDRTLDEDALLRAVLGEDSIGADMQRDTRASYEALKVFMENEERRRRKNARDGDGYIDFREEMKRVTNGRGGMVWVRND 505
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71434.18250.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.330e-28
Identity = 62/93 (66.67%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:    1 DFLRAVNEGLVEEVVDRTLDEETLVRVVSGEEDADSEMRRDTRASFEALKKFMEKEKSNRRKTATDGDGYVNFEDKMKRVDDGKGGLVWVRTE 279
            +FL+AV EG VEEV D TLDEE L RVVSGEE A ++++RDTR S+EALKKFM+KE  NRRK A +GDGY++F +KM+R  DGKGG+VWVR E
Sbjct:  822 EFLQAVKEGAVEEVADCTLDEEALSRVVSGEEVAGADLQRDTRVSYEALKKFMDKE-LNRRKNAKEGDGYIDFREKMQRESDGKGGIVWVRIE 913
[Close]
BLAST of mRNA_Ecto-sp13_S_contig71434.18250.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 4.350e-28
Identity = 57/93 (61.29%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    1 DFLRAVNEGLVEEVVDRTLDEETLVRVVSGEEDADSEMRRDTRASFEALKKFMEKEKSNRRKTATDGDGYVNFEDKMKRVDDGKGGLVWVRTE 279
            DFL+ V +GLVEE+VDRTLDE+ L+R VSG++   ++++RDTRAS+EALK FME E+  RRK A DGDGY+ F ++MKR+ DG+GG VWVR E
Sbjct:  924 DFLKDVKDGLVEELVDRTLDEDALLRAVSGDDTVGADLQRDTRASYEALKVFMENEERRRRKNARDGDGYIEFREEMKRLPDGRGGEVWVRNE 1016
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71434.18250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5KRM3_9PHAE5.500e-3363.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS7_ECTSI1.860e-3166.67LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUC3_ECTSI1.190e-3064.52LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K516_9PHAE1.030e-2964.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K4_9PHAE1.420e-2963.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1D3_9PHAE3.780e-2963.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJS7_ECTSI1.260e-2861.29LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KSY4_9PHAE1.770e-2861.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L846_9PHAE2.330e-2866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZA1_ECTSI4.350e-2861.29LRR-GTPase of the ROCO family, incomplete sequence... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71434contigEcto-sp13_S_contig71434:333..611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score126.7
Seed ortholog evalue5.6e-27
Seed eggNOG ortholog2880.D8LCS7
Model size281
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size279
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.7673671-CDS-Ecto-sp13_S_contig71434:332..6111681463979.7673671-CDS-Ecto-sp13_S_contig71434:332..611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71434 333..611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71434.18250.1prot_Ecto-sp13_S_contig71434.18250.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71434 333..611 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71434.18250.1

>prot_Ecto-sp13_S_contig71434.18250.1 ID=prot_Ecto-sp13_S_contig71434.18250.1|Name=mRNA_Ecto-sp13_S_contig71434.18250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
DFLRAVNEGLVEEVVDRTLDEETLVRVVSGEEDADSEMRRDTRASFEALK
KFMEKEKSNRRKTATDGDGYVNFEDKMKRVDDGKGGLVWVRTE
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mRNA from alignment at Ecto-sp13_S_contig71434:333..611+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71434.18250.1 ID=mRNA_Ecto-sp13_S_contig71434.18250.1|Name=mRNA_Ecto-sp13_S_contig71434.18250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71434:333..611+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTTTCTGCGGGCCGTCAATGAGGGTTTGGTCGAGGAGGTAGTCGACCG
TACTCTCGACGAGGAAACTTTGGTCCGTGTCGTGTCTGGGGAGGAGGATG
CCGACAGCGAAATGCGAAGGGACACGAGGGCCTCGTTTGAAGCTCTGAAG
AAGTTCATGGAGAAGGAGAAAAGTAACAGGCGTAAAACTGCCACGGACGG
TGACGGCTATGTAAACTTCGAGGATAAAATGAAGCGCGTCGACGATGGAA
AGGGAGGACTGGTGTGGGTTAGGACAGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71434:333..611+

>mRNA_Ecto-sp13_S_contig71434.18250.1 ID=mRNA_Ecto-sp13_S_contig71434.18250.1|Name=mRNA_Ecto-sp13_S_contig71434.18250.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71434:333..611+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTTTCTGCGGGCCGTCAATGAGGGTTTGGTCGAGGAGGTAGTCGACCG
TACTCTCGACGAGGAAACTTTGGTCCGTGTCGTGTCTGGGGAGGAGGATG
CCGACAGCGAAATGCGAAGGGACACGAGGGCCTCGTTTGAAGCTCTGAAG
AAGTTCATGGAGAAGGAGAAAAGTAACAGGCGTAAAACTGCCACGGACGG
TGACGGCTATGTAAACTTCGAGGATAAAATGAAGCGCGTCGACGATGGAA
AGGGAGGACTGGTGTGGGTTAGGACAGAA
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