mRNA_Ecto-sp13_S_contig7140.18249.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7140.18249.1
Unique NamemRNA_Ecto-sp13_S_contig7140.18249.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7140.18249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7140contigEcto-sp13_S_contig7140:2..1854 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size865
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.7103415-UTR-Ecto-sp13_S_contig7140:1..331681463979.7103415-UTR-Ecto-sp13_S_contig7140:1..33Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7140 2..33 -
1681463979.720632-UTR-Ecto-sp13_S_contig7140:1021..10291681463979.720632-UTR-Ecto-sp13_S_contig7140:1021..1029Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7140 1022..1029 -
1681463979.7405581-UTR-Ecto-sp13_S_contig7140:1497..18541681463979.7405581-UTR-Ecto-sp13_S_contig7140:1497..1854Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7140 1498..1854 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.730393-CDS-Ecto-sp13_S_contig7140:1029..14971681463979.730393-CDS-Ecto-sp13_S_contig7140:1029..1497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7140 1030..1497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7140.18249.1prot_Ecto-sp13_S_contig7140.18249.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7140 1030..1497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7140.18249.1

>prot_Ecto-sp13_S_contig7140.18249.1 ID=prot_Ecto-sp13_S_contig7140.18249.1|Name=mRNA_Ecto-sp13_S_contig7140.18249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=156bp
MRLVLTVRDILVGALAGVTREESAHTRTEFSSTISSAVHALIVSRSTLSK
LFRSSIIMPLKRFPHKLDYSCDPYLPHLLGKVESDYNVSSCDVAEIRESR
PNAEISQYCMFVASARVSTCTRFPPSLAQSQPWSLADSVNGGTYLSTVTI
NVDFR*
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mRNA from alignment at Ecto-sp13_S_contig7140:2..1854-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7140.18249.1 ID=mRNA_Ecto-sp13_S_contig7140.18249.1|Name=mRNA_Ecto-sp13_S_contig7140.18249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1853bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7140:2..1854- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGAATGCGATTGCCCGTTCAGCGCTTGATTGAGTAGAACTCATCTTGGC
ATCTAGCTACACACCAACTGCTACGTAGTTTATGGCGTTCGAAAGTTTCC
CAAAGAGGGGGGGTGAAACGGGGAAAACTGCACCCCCGAGGAATTCGTGA
GGGAAATCAAATCATCGGACCGGTACGAGAGAAAACCATGTATTCGCATA
TTGCGGCCTGTATTAGAGAAACTTCCACGGAATGCAGAGATCTCACGTCA
TATTCCCGCCTTCACGGAGGTCGCTCTCTCACATTCATCAATATCACGTC
CAATCGAGGGAGATGGAGTCAATTTGTTCGCATGTGTTGTGATTCTTCTG
GACGGCAATGCGATTGGTGCTCACCGTTCGAGACATTTTGGTAGGCGCAT
TAGCAGGGGTCACACGGGAGGAAAGCGCACACACTCGAACTGAATTTTCT
TCAACGATTTCTTCTGCTGTGCATGCTTTAATTGTATCGCGATCAACCTT
GAGTAAATTGTTCCGCTCATCCATCATCATGCCGTTGAAGCGCTTTCCGC
ATAAACTCGACTACTCATGTGATCCCTACCTTCCGCATCTGTTGGGCAAA
GTCGAAAGTGATTACAATGTCAGTTCGTGTGACGTCGCCGAGATTCGTGA
ATCGCGTCCAAACGCTGAAATCTCCCAATACTGCATGTTTGTCGCATCCG
CGCGTGTGTCCACTTGCACTCGCTTCCCACCTTCGCTTGCACAATCGCAA
CCTTGGTCATTGGCGGACTCGGTCAATGGCGGGACCTACCTGTCAACCGT
GACCATCAATGTTGATTTTAGGTGATGATGAAGGTACGCTTCTCTTTCCA
TCCTCCGAGCCCGGGAGCGACGCTTGACAATGCTGTACTTGTATTTCGTT
TTCGGCAAGAAAATTGATCTCCACGCCAATTCTCTTGAGGTTTTGAGCCT
GGTTCCTTTCTCCTCCAATCTCTTGTGGTTCCGGTTGCTCGCTGTGGATA
GCCGGGCTACTACGTACAGAAGCGACCAAACCTCATTGAATACTCCGATG
GCCGCTTCTCTTCATCATGCTACGCACCGACTAGGGTGACAGAAGTACAC
GTCGTCGGGGAATACCGAACAAGATGATGAGCGTGTTGTTTCACTTCCGA
TATAAAAAAATTTAGGGTTGGCACGTTTCGCTCCTGAGGGCGACGGGAAG
GGCGCCTATGTTTTTCCCTTTCCACTCATTCTGGACGTCGGCCCTTCCAA
ATTTCGGTGCAGTTCTGAACGCACGAGGCAGGGTTGAACAAAAAGGCCAC
GTAGAAGTTGTTTGTTCCGGCTTTCTTCTACGGTGCTTGCCTTGGTGTAG
ATCGCGATAGAAATTAAGCCGTTGCTCCCCCTTGTCAGCCGTGTGGTAAA
TACTTTGTTTGGGCACGTTGTGCGTAACAAACCCCAGTTCGTGTGACAGC
ACCGAGGTTCAAACCCACACCAAACGGCAGAAGAGAGCGAGATTGCCTAC
TGAACTTCCAATTTTTTATGACCAACCGTTTTCCAGGAAATTGTGTGTTG
CTATCGCTGGGTATTTCCTGCTGTGCTGTTCCCCAGAGAATCGGCCGTGA
GGGGATGTGTGCTTGTTTGCTCCGCCTTTGCTGCCTGTGGAACACCGGAC
GAACAATGCATGTTGTGTCATTCGCGTTATGAAGCGAGGTGATACCCAGC
CACATCTAGGCACGGTGGTTAGACTCTTCTACTGCCAATGGCCCCTCTCT
CCCCTCTTACCATGTTAACCAACAACACCATCCACCCTCTGTCGTGTACC
CTTTGCATCACAACCGTGCAGCTCCAGTGGTCGCTATCGTCGGTGGAGCA
GTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7140:2..1854-

>mRNA_Ecto-sp13_S_contig7140.18249.1 ID=mRNA_Ecto-sp13_S_contig7140.18249.1|Name=mRNA_Ecto-sp13_S_contig7140.18249.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7140:2..1854- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGATTGGTGCTCACCGTTCGAGACATTTTGGTAGGCGCATTAGCAGG
GGTCACACGGGAGGAAAGCGCACACACTCGAACTGAATTTTCTTCAACGA
TTTCTTCTGCTGTGCATGCTTTAATTGTATCGCGATCAACCTTGAGTAAA
TTGTTCCGCTCATCCATCATCATGCCGTTGAAGCGCTTTCCGCATAAACT
CGACTACTCATGTGATCCCTACCTTCCGCATCTGTTGGGCAAAGTCGAAA
GTGATTACAATGTCAGTTCGTGTGACGTCGCCGAGATTCGTGAATCGCGT
CCAAACGCTGAAATCTCCCAATACTGCATGTTTGTCGCATCCGCGCGTGT
GTCCACTTGCACTCGCTTCCCACCTTCGCTTGCACAATCGCAACCTTGGT
CATTGGCGGACTCGGTCAATGGCGGGACCTACCTGTCAACCGTGACCATC
AATGTTGATTTTAGGTGA
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