mRNA_Ecto-sp13_S_contig714.18247.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig714.18247.1
Unique NamemRNA_Ecto-sp13_S_contig714.18247.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig714.18247.1 vs. uniprot
Match: D8LPM3_ECTSI (Short-chain dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM3_ECTSI)

HSP 1 Score: 504 bits (1298), Expect = 9.470e-174
Identity = 254/335 (75.82%), Postives = 292/335 (87.16%), Query Frame = 1
Query:   55 MGSASSSE-RVKPLSQDLRGKHFVVTGANTGIGYATARELAKLGAKVSLACRNAERGQQAVEKMKAEALEKPVKEGMDLLEGLADVDVQVEVLDLGSLQSVVSFAQRFKTSGAKVDVLINNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPVLKDGGRVVFLSSLAHDQTPGLPKTTLDWDNINYEKPDTYSNSMSYARSKLGNVLDAKEFAKRLAPRKINTYAVHPGVVNTELTRNMTDNSLPSLIFRWTAPLTKFAMATPLTGALTSLRCALDQELAVPEVSGKYWANMKETQPSELAQDPANPPRFWEITESMLEAKLGKKVDEIL 1056
            MGSA S+  + K + QDLRGKHFVVTGANTG+GYAT RELAK+GA V+LACR+AERGQQA++KMKAEALEKPVKEG+DLLEGL DVDV++EVLDLGSLQSV++FAQRFK SG KVDVLINNAGIMAIPER+ETVDG EMQIGVNHFG HLLTRLMEP++ DGGRV+FLSSL H Q PG  K TLD+DN+NYEKPDTY++ M+Y RSKL N+LDAKEFAKRL  R I+TYA HPG+VNTEL RNMTD+SL S + R TAPL++F +ATPLTGALT++RCA+D  LA PE SGKYW NMKE  PSELA DPANPPR WE+TES+LEAKLGK VD++L
Sbjct:    1 MGSAHSTNCKAKSVCQDLRGKHFVVTGANTGLGYATTRELAKMGAAVTLACRSAERGQQAIDKMKAEALEKPVKEGVDLLEGLTDVDVRLEVLDLGSLQSVIAFAQRFKASGTKVDVLINNAGIMAIPERRETVDGLEMQIGVNHFGGHLLTRLMEPLMNDGGRVIFLSSLGHRQPPGQAKVTLDFDNVNYEKPDTYNSWMAYGRSKLANILDAKEFAKRLEARGISTYACHPGIVNTELMRNMTDSSLMSRVTRLTAPLSRFILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEAKLGKNVDDLL 335          
BLAST of mRNA_Ecto-sp13_S_contig714.18247.1 vs. uniprot
Match: D8LP30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP30_ECTSI)

HSP 1 Score: 454 bits (1167), Expect = 1.080e-151
Identity = 226/335 (67.46%), Postives = 271/335 (80.90%), Query Frame = 1
Query:   58 GSASSSERVKPLSQDLRGKHFVVTGANTGIGYATARELAKLGAKVSLACRNAERGQQAVEKMKAEALEKPVKEGMDLLEGLADVDVQVEVLDLGSLQSVVSFAQRFKTSGAKVDVLINNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPVLKDGGRVVFLSSLAHDQTPGLPKTTLDWDNINYEKPDTYSNSMSYARSKLGNVLDAKEFAKRLAPRKINTYAVHPGVVNTELTRNMTDNSLPS-LIFRWTAPLTKFAMATPLTGALTSLRCALDQELAVPEVSGKYWANMKETQPSELAQDPANPPRFWEITESMLEAKLGKKVDEILP 1059
            G + ++ + K L QDLRGKHF+VTGANTG+GY TARELAK+GAKV+LACR+AERGQQA++KMKAEALEKPVKEG+DLL+GL +VDV++EVLDLGSLQSVV+FAQRFK SG KVDVL+NNAGI  +P R+ET DG EMQIGVNHFG HLLTRLMEP + DGGRV+FLSSLAH + PG+PKTT DWDN+N++KP TY    +Y RSKL N+ DAKEFAKRLA R INTYAV PG+V TE+ R +    L   ++      L    +  PL GALT++RCA+D  LA PE+SGKYW NMKE  PSELA DPANPPR WE+TES+LE KLGK+VD+++P
Sbjct:  152 GDSKATRKAKSLRQDLRGKHFIVTGANTGLGYVTARELAKMGAKVTLACRSAERGQQAIDKMKAEALEKPVKEGVDLLDGLTEVDVRLEVLDLGSLQSVVAFAQRFKASGTKVDVLVNNAGIFGVPNRRETADGLEMQIGVNHFGGHLLTRLMEPSMNDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLMMPIVNAGYVALGWVWLKGPLDGALTTVRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEEKLGKRVDDVVP 486          
BLAST of mRNA_Ecto-sp13_S_contig714.18247.1 vs. uniprot
Match: A0A6H5JP92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP92_9PHAE)

HSP 1 Score: 441 bits (1133), Expect = 9.350e-149
Identity = 220/335 (65.67%), Postives = 266/335 (79.40%), Query Frame = 1
Query:   58 GSASSSERVKPLSQDLRGKHFVVTGANTGIGYATARELAKLGAKVSLACRNAERGQQAVEKMKAEALEKPVKEGMDLLEGLADVDVQVEVLDLGSLQSVVSFAQRFKTSGAKVDVLINNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPVLKDGGRVVFLSSLAHDQTPGLPKTTLDWDNINYEKPDTYSNSMSYARSKLGNVLDAKEFAKRLAPRKINTYAVHPGVVNTELTRNMTDNSL-PSLIFRWTAPLTKFAMATPLTGALTSLRCALDQELAVPEVSGKYWANMKETQPSELAQDPANPPRFWEITESMLEAKLGKKVDEILP 1059
            G + ++ + K L QDLRGKHF+VTGANTG+GY TARELAK+GAKV+LACR+AERGQQA++K+KAE LEKP KEG+DLL+GL +VDV++EVLDLGSL+SV++FAQ FK SG KVDVL+NNAGI  +P R+ET DG EM IGVNHFG HLLTRLMEP + DGGRV+FLSSL H + PG+PKTT DWDN+N++KP TY    +Y RSKL N+ DAKEFAKRLA R INTYAV PG+V TE+ R +    L   ++    A L    +  PL GALT++RCA+D  LA PE+SGKYW NMKE  PSELA DPANPPR WEITES+LE KLGK+VD++ P
Sbjct:    5 GDSKATRKAKSLRQDLRGKHFIVTGANTGLGYVTARELAKMGAKVTLACRSAERGQQAIDKLKAEVLEKPAKEGVDLLDGLTEVDVRLEVLDLGSLRSVIAFAQGFKASGTKVDVLVNNAGIFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPSINDGGRVLFLSSLTHSRPPGMPKTTWDWDNMNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYAALGWVWLKGPLDGALTTIRCAVDPCLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEDKLGKRVDDVFP 339          
BLAST of mRNA_Ecto-sp13_S_contig714.18247.1 vs. uniprot
Match: D7FTL4_ECTSI (Similar to Retinol dehydrogenase 12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTL4_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 1.400e-81
Identity = 132/211 (62.56%), Postives = 157/211 (74.41%), Query Frame = 1
Query:  424 MAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPVLKDGGRVVFLSSLAHDQTPGLPKTTLDWDNINYEKPDTYSNSMSYARSKLGNVLDAKEFAKRLAPRKINTYAVHPGVVNTELTRNMTDNSLPSLIFRWTAPLTKFAMATPLTGALTSLRCALDQELAVPEVSGKYWANMKETQPSELAQDPANPPRFWEITESMLEAKLGKKVDEIL 1056
            MAIP  + TVDG E QIGVNHFG HLLTRLME  + DGGRVVFLSS+AH           DWDN+NY KP+ Y   ++Y RSKL NVLDAK FA  L+ R+INTYA+HPGVVNT+L RN+TD  L S +FR    L  F +A+PLTG+LT+LRCA+D  LA PE SGKYW++MK+ QPS LA DPANPPR WEITE +LE KLGKK++ +L
Sbjct:    1 MAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKHGGW------DWDNVNYTKPNKYVPMIAYGRSKLANVLDAKAFAGHLSDRRINTYALHPGVVNTDLFRNVTDGRLISRVFRVAKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVQPSALASDPANPPRLWEITEELLETKLGKKIENLL 205          
BLAST of mRNA_Ecto-sp13_S_contig714.18247.1 vs. uniprot
Match: A0A6H5JGN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN4_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 6.990e-66
Identity = 117/180 (65.00%), Postives = 137/180 (76.11%), Query Frame = 1
Query:  277 GMDLLEGLADVDVQVEVLDLGSLQSVVSFAQRFKTSGAKVDVLINNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPVLKDGGRVVFLSSLAHDQTPGLPKTTLDWDNINYEKPDTYSNSMSYARSKLGNVLDAKEFAKRLAPRKINTYAVHPGVVNTELTRNMTDNSLPSLIFR 816
            G+DLLEGL+DVDVQVEVLDLG LQSVVSFAQR K+SG K+DVLI+NAGIMAIP  K +VDG E QIGVNHF  HLL+RLM   + DGGRVVF SS+AH           DWDN+NY KP+ +   ++Y RSKL NVLDAK FA  L+ R+INTYA+HPGVVNT+L RN TD  L S +F+
Sbjct:   29 GVDLLEGLSDVDVQVEVLDLGVLQSVVSFAQRLKSSGQKIDVLIDNAGIMAIPTEKRSVDGLEKQIGVNHFVTHLLSRLMGKQIIDGGRVVFFSSVAHKHGG------CDWDNVNYTKPNEHGPMIAYGRSKLANVLDAKGFAGHLSDRRINTYALHPGVVNTDLFRNATDGRLISRMFQ 202          
BLAST of mRNA_Ecto-sp13_S_contig714.18247.1 vs. uniprot
Match: A0A433SZU2_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SZU2_ELYCH)

HSP 1 Score: 206 bits (525), Expect = 4.600e-58
Identity = 130/315 (41.27%), Postives = 184/315 (58.41%), Query Frame = 1
Query:   94 SQDLRGKHFVVTGANTGIGYATARELAKLGAKVSLACRNAERGQQAVEKMKAEALEKPVKEGMDLLEGLADVDVQVEVLDLGSLQSVVSFAQRFKTSGAKVDVLINNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPVLK--DGGRVVFLSSLAHDQTPGLPKTTLDWDNINYEKPDTYSNSMSYARSKLGNVLDAKEFAKRLAPRKINTYAVHPGVVNTELTRNMTDNSLPSLIFRWTAPLTKFAMATPLTGALTSLRCALDQELAVPEVSGKYWANMKETQPSELAQDPANPPRFWEITESMLEAKL 1032
            ++ L  K  ++TGANTG+G  TAR+LAK G ++ +ACRN E+G         EA  K      +++E   + DV V+ LDL S +S+ +FA++F  +  ++D+LINNAG+MA P+   T DG EMQIG NHFG  LLT L+   LK     R+V LSS+AH         ++ WD+IN +K   Y +  +Y +SKL N+L   E + RL    +   +VHPG VNT+L R+         IF+   PL+K    TP+ GA T+L CAL  +L   EVSGKY+ + KE  PS   Q  A+  R WE+TE +++ KL
Sbjct:    8 TETLELKTVLITGANTGLGKETARDLAKRGGRIIMACRNLEKG---------EATRK------EIVEETKNEDVVVQELDLASFESIQNFAKKFNETETRLDILINNAGVMACPKTL-TKDGLEMQIGTNHFGHFLLTNLLLDKLKACSPSRIVILSSMAH------AFASIKWDDINSDKK--YGDWAAYGQSKLANILHCLELSNRLKGTGVTVNSVHPGGVNTDLQRHTNRG-----IFKLLKPLSKLFFKTPVDGAQTTLYCALSPDLE--EVSGKYFVDCKEKAPSRRGQSEADAKRLWELTEEIIQQKL 291          
BLAST of mRNA_Ecto-sp13_S_contig714.18247.1 vs. uniprot
Match: A0A553N7Y6_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553N7Y6_TIGCA)

HSP 1 Score: 206 bits (524), Expect = 6.620e-58
Identity = 133/318 (41.82%), Postives = 184/318 (57.86%), Query Frame = 1
Query:   94 SQDLRGKHFVVTGANTGIGYATARELAKLGAKVSLACRNAERGQQAVEKMKAEALEKPVKEGMDLLEGLADVDVQVEVLDLGSLQSVVSFAQRFKTSGAKVDVLINNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPVLKDGG------RVVFLSSLAHDQTPGLPKTTLDWDNINYEKPDTYSNSMSYARSKLGNVLDAKEFAKRLAPRKINTYAVHPGVVNTELTRNMTDNSLPSLIFRWTAPLTKFAMATPLTGALTSLRCALDQELAVPEVSGKYWANMKETQPSELAQDPANPPRFWEITESMLEAK 1029
            S+ L GK  V+TGANTGIG ATA +LAK GA+V + CR+ E+G +A  ++K                      V+V  LDL SL+SV   A+    S  K+D+LINNAG+M  P  K T DGF+MQ G NH G  LLT ++ P+++         R++ LSSLAH   P      ++WD+INYEK  +YS   +YA+SKL NVL AKE A+RL+  +I+ YAVHPG V+TEL R+   N   + +F+   P        P+ GA T+L CALD  +A    SGKY+A+ +ET+P   A    +  R W+++E  +  K
Sbjct:   42 SKALNGKLVVITGANTGIGKATAEDLAKRGARVIILCRSVEKGDEAAAEIKENT----------------GGQVEVRRLDLASLKSVRECAEALVASEDKIDILINNAGVMLCPHWK-TEDGFDMQFGTNHLGHFLLTEMLMPLIRKSEASGFHPRIIILSSLAHKGAP------INWDDINYEK--SYSAIAAYAQSKLANVLHAKELAERLSDTEISVYAVHPGAVDTELGRHFY-NKWWAKLFK---PCASRLFKQPIHGAQTTLYCALDDSVA--NDSGKYYADCRETRPHSRALRKEDQKRLWDLSEKFVGLK 328          
BLAST of mRNA_Ecto-sp13_S_contig714.18247.1 vs. uniprot
Match: A0A3S0Z7Y7_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0Z7Y7_ELYCH)

HSP 1 Score: 204 bits (520), Expect = 5.070e-57
Identity = 129/313 (41.21%), Postives = 187/313 (59.74%), Query Frame = 1
Query:   97 QDLRGKHFVVTGANTGIGYATARELAKLGAKVSLACRNAERGQQAVEKMKAEALEKPVKEGMDLLEGLADVDVQVEVLDLGSLQSVVSFAQRFKTSGAKVDVLINNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPVLKDG--GRVVFLSSLAHDQTPGLPKTTLDWDNINYEKPDTYSNSMSYARSKLGNVLDAKEFAKRLAPRKINTYAVHPGVVNTELTRNMTDNSLPSLIFRWTAPLTKFAMATPLTGALTSLRCALDQELAVPEVSGKYWANMKETQPSELAQDPANPPRFWEITESMLEAK 1029
            + L GK  V+TG NTGIG+ TA++LA+ GA++ +ACR+ ER + A  K+K            D++      +V  + LDL S +S+ +F   F  + A++D+LINNAG+M  P R  T DG EMQ+G NHFG  LLT L+   LK     R+V +SS AH +T G+     ++D+IN EK  +Y    +Y++SKL N+L  KE  +RL    +  YA+HPGVV TEL R++   + P ++F  TAPL    + TPL GA T+L CAL+   A   +SGKY+++ KE +PS  AQD     R W+++  + E K
Sbjct:   61 EKLNGKTVVITGCNTGIGFETAKDLAQRGARIIMACRDMERCEAAASKIK------------DIVNSN---NVICKKLDLSSFESIRAFCDEFNRTEARLDILINNAGVMMCP-RMLTKDGLEMQLGTNHFGHFLLTNLLLDKLKASRPSRIVAVSSRAHTRTQGI-----NFDDINSEK--SYEKMTAYSQSKLANILHVKELTRRLEGTGVTAYALHPGVVATELPRHIALANNPIILFL-TAPLRYILLKTPLEGAQTTLACALNP--AWETISGKYYSDCKEKEPSLPAQDAEAAKRLWDVSVEITEGK 347          
BLAST of mRNA_Ecto-sp13_S_contig714.18247.1 vs. uniprot
Match: A0A6J8C7G3_MYTCO (RDH12 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8C7G3_MYTCO)

HSP 1 Score: 201 bits (511), Expect = 4.610e-56
Identity = 127/309 (41.10%), Postives = 189/309 (61.17%), Query Frame = 1
Query:  103 LRGKHFVVTGANTGIGYATARELAKLGAKVSLACRNAERGQQAVEKMKAEALEKPVKEGMDLLEGLADVDVQVEVLDLGSLQSVVSFAQRFKTSGAKVDVLINNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPVLKDGG--RVVFLSSLAHDQTPGLPKTTLDWDNINYEKPDTYSNSMSYARSKLGNVLDAKEFAKRLAPRKINTYAVHPGVVNTELTRNMTDNSLPSLIFRWTAPLTKFAMATPLTGALTSLRCALDQELAVPEVSGKYWANMKETQPSELAQDPANPPRFWEITESMLE 1023
            L GKH ++TGANTGIG  TA +LA  GAKV+LACR+ +R Q A +               D+ +   + ++ V+ L+L SL+SV SFA+    +  ++DVLINNAGIM  P  K T DGFEMQ GVNH G  LLT L+   LK     RVV +SSLAH+      +  +++D++N EK   Y    +Y++SKL NVL + E AK+L    + TY++HPGV+NTEL+R++T     S+ +R    + K+ + TP  GA T++ CA+D+ L+  E +GKY+++  +  PS+ A +  N  R W+++  M++
Sbjct:   46 LDGKHVIITGANTGIGKETAIDLANRGAKVTLACRDMKRAQDAAD---------------DIKQITGNQNIIVKKLNLASLKSVRSFAEDINKNEKRIDVLINNAGIMRCPYWK-TDDGFEMQFGVNHLGHFLLTNLLLDKLKISAPSRVVTVSSLAHE------RGKMNFDDLNQEK--NYDKGSAYSQSKLANVLFSSELAKKLQGTGVTTYSLHPGVINTELSRHVTQ----SMGWRMLLSVIKYLIKTPNEGAQTTIYCAVDESLS--EETGKYYSDCAKKTPSKEALNDENAKRLWKLSAKMVD 324          
BLAST of mRNA_Ecto-sp13_S_contig714.18247.1 vs. uniprot
Match: UPI0019397823 (retinol dehydrogenase 12-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019397823)

HSP 1 Score: 192 bits (489), Expect = 6.760e-53
Identity = 131/311 (42.12%), Postives = 176/311 (56.59%), Query Frame = 1
Query:  103 LRGKHFVVTGANTGIGYATARELAKLGAKVSLACRNAERGQQAVEKMKAEALEKPVKEGMDLLEGLADVDVQVEVLDLGSLQSVVSFAQRFKTSGAKVDVLINNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPVLKDGG--RVVFLSSLAHDQTPGLPKTTLDWDNINYEKPDTYSNSMSYARSKLGNVLDAKEFAKRLAPRKINTYAVHPGVVNTELTRNMTDNSLPSLIFRWTAPLT----KFAMATPLTGALTSLRCALDQELAVPEVSGKYWANMKETQPSELAQDPANPPRFWEITESM 1017
            + GK  ++TGANTGIG ATA ++A   A+V +ACR+ E+G  A EK+               ++     DV ++ LDL S +S+  FA     +  K+ VLINNAG+M  P  K T DGFEMQ GVNH G  LLT L+  +LK     RVV +SS AH +  G  K  + WD++N+EK   Y    +Y +SKL NVL ++E +KRL    + TYA+ PGVV+TEL R+   N  PSL  +    L     KF   TP  GA T + CA+  EL   EVSGKY+A+ K+T  S  AQ+     R W I+E +
Sbjct:   16 MDGKTVLITGANTGIGLATAIDMANRNARVIMACRDMEKGNAAKEKV---------------IQETGSNDVILKELDLASFESIREFAADINENEPKLHVLINNAGVMMCPPMK-TKDGFEMQFGVNHLGHFLLTNLLVELLKKSAPSRVVTVSSTAHYKMYGWGK--IHWDDLNFEKK--YDAQKAYGQSKLMNVLFSRELSKRLHGTAVTTYALEPGVVDTELVRHYGKNENPSLWDKLFNSLNYLPLKFLFRTPEQGAQTQIYCAVAHELN--EVSGKYYASCKQTAESWDAQNDEYAKRLWRISEEL 304          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig714.18247.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPM3_ECTSI9.470e-17475.82Short-chain dehydrogenase n=2 Tax=Ectocarpus TaxID... [more]
D8LP30_ECTSI1.080e-15167.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP92_9PHAE9.350e-14965.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTL4_ECTSI1.400e-8162.56Similar to Retinol dehydrogenase 12 n=1 Tax=Ectoca... [more]
A0A6H5JGN4_9PHAE6.990e-6665.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A433SZU2_ELYCH4.600e-5841.27Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A553N7Y6_TIGCA6.620e-5841.82Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0A3S0Z7Y7_ELYCH5.070e-5741.21Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A6J8C7G3_MYTCO4.610e-5641.10RDH12 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8C7G3_... [more]
UPI00193978236.760e-5342.12retinol dehydrogenase 12-like n=1 Tax=Styela clava... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig714contigEcto-sp13_S_contig714:18481..21171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score511.1
Seed ortholog evalue3.8e-142
Seed eggNOG ortholog2880.D8LPM3
Model size1751
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
Cds size1008
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.6369932-UTR-Ecto-sp13_S_contig714:18480..191691681463979.6369932-UTR-Ecto-sp13_S_contig714:18480..19169Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig714 18481..19169 -
1681463979.6722364-UTR-Ecto-sp13_S_contig714:21117..211711681463979.6722364-UTR-Ecto-sp13_S_contig714:21117..21171Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig714 21118..21171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463979.648912-CDS-Ecto-sp13_S_contig714:19169..199551681463979.648912-CDS-Ecto-sp13_S_contig714:19169..19955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig714 19170..19955 -
1681463979.660189-CDS-Ecto-sp13_S_contig714:20895..211171681463979.660189-CDS-Ecto-sp13_S_contig714:20895..21117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig714 20896..21117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig714.18247.1prot_Ecto-sp13_S_contig714.18247.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig714 19170..21117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig714.18247.1

>prot_Ecto-sp13_S_contig714.18247.1 ID=prot_Ecto-sp13_S_contig714.18247.1|Name=mRNA_Ecto-sp13_S_contig714.18247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=336bp
MGSASSSERVKPLSQDLRGKHFVVTGANTGIGYATARELAKLGAKVSLAC
RNAERGQQAVEKMKAEALEKPVKEGMDLLEGLADVDVQVEVLDLGSLQSV
VSFAQRFKTSGAKVDVLINNAGIMAIPERKETVDGFEMQIGVNHFGPHLL
TRLMEPVLKDGGRVVFLSSLAHDQTPGLPKTTLDWDNINYEKPDTYSNSM
SYARSKLGNVLDAKEFAKRLAPRKINTYAVHPGVVNTELTRNMTDNSLPS
LIFRWTAPLTKFAMATPLTGALTSLRCALDQELAVPEVSGKYWANMKETQ
PSELAQDPANPPRFWEITESMLEAKLGKKVDEILP*
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mRNA from alignment at Ecto-sp13_S_contig714:18481..21171-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig714.18247.1 ID=mRNA_Ecto-sp13_S_contig714.18247.1|Name=mRNA_Ecto-sp13_S_contig714.18247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2691bp|location=Sequence derived from alignment at Ecto-sp13_S_contig714:18481..21171- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTTGTTCGTGTACAGCAGGAGCTTTCTCGCGAACACTCCCCCCTCCATC AATCATGGGATCAGCATCTTCCTCAGAAAGGGTGAAGCCCCTCAGCCAGG ACCTCCGAGGGAAGCACTTCGTCGTCACCGGGGCAAACACAGGAATCGGC TATGCCACAGCGCGGGAGCTGGCGAAGCTGGGGGCGAAGGTCTCCCTTGC CTGCCGGAACGCCGAGAGGGGCCAGCAGGCTGTCGAGAAGATGAAGGCGG AGGCCCTAGAGAAGCCCGTCAAGGAGGTGAGAAGAATGCATCAGCTATCT GACTTCGTTAGGATCTTCTGTCTCGTCTTCGTCGCTTCATCTCTTCACGG TATTCGCACAAGTTTCTCGTTTGGGCACAGTAGAGGGCGCGGTTATCTAC GTGTCCTTACAAGGTGTAGTGCAGTCTAAGGTTCGACCGGCTTCATTTCA GCAGGTTTCAGACAACCGCGGTACGTATGCAAGAACGCAAGTGTTTCTGC GTGGAATGGGGTACCGACTCCATTTGCGGTGGGAGGGCTTGCTATCTGTC AAGTTCTATGAGAAGATAGCGTCGTTGGTAGTGGACGATACTTCCCGCAT AACTACACGCATCGGTTTTGATTCGTGAAAGTACTGTTTGTCCCGGACTA CATGAATGGTAACCCGGGCGTGCGGTAGCTCCAACAGCAGCAGAATCAAG TATATATGTGGCCCCTTCGTGCACCTCTTAACCATTTAACAGCATCCCTG CCGGAGACAATCCCATCCTGTACTAAGAAGCTGCACAGCAAAATGAGCGC ATTTGAGTTCTCTTGTTCTTCGTATCTGCCAAGTCTGGGACCACCATAGA ATCGGTCCCCCACTGTCCGTACCAATGGTGGAAGAGGATGTTCTGTCTGA GAGGCTAGGTCGGTTCCTCACATAGACGTTCCACAAGAAATTAAGCAGTG AACGCCATCCTCTGCCCTTGCCTGATACGTAGAACTAACTGATCGCGGAG GAAGAAGGTCCTACCGGACTCTGTTCTAGAGAAGTCGGGGATAGGATCGG CGCCTCTTGCCAAAAGACATTGCACATTCCACACACCGAACCCGGTGCTA GCCGATGCCATTCATTTCACGCATGCTGGGTCGTTTGCCTTTGTTTTTGC AAGAGCGCCACAGCCTTGGTATGCCCTACCGACATCCACTGCCACTTTTG TTTTGCCCTCACGCAGGGCATGGATCTGCTCGAAGGGCTCGCAGACGTGG ACGTGCAGGTAGAGGTTCTGGATCTAGGATCGTTGCAGTCCGTCGTCTCC TTCGCCCAGAGATTCAAGACCTCGGGAGCCAAAGTGGACGTCCTCATCAA CAACGCCGGGATTATGGCGATCCCGGAGCGCAAGGAAACCGTGGACGGTT TCGAGATGCAGATCGGCGTCAACCACTTCGGCCCGCACCTCCTGACGAGG CTGATGGAGCCCGTGCTCAAGGATGGAGGTCGGGTTGTGTTTCTGTCCTC GCTTGCGCACGACCAGACACCAGGATTGCCGAAGACCACCCTGGACTGGG ACAACATCAACTACGAGAAGCCGGACACGTACAGCAACTCTATGTCGTAC GCCCGCTCCAAGCTCGGGAACGTCCTGGACGCGAAGGAGTTCGCGAAGCG CCTGGCCCCGCGTAAGATCAACACCTACGCCGTTCACCCGGGCGTCGTCA ACACCGAGCTCACGCGCAACATGACGGACAACAGCCTGCCATCTCTCATC TTCCGCTGGACTGCGCCCTTGACCAAGTTTGCGATGGCGACCCCTCTCAC CGGGGCCCTGACCAGCCTACGGTGTGCCCTGGACCAAGAGCTGGCCGTGC CAGAGGTCTCTGGCAAGTACTGGGCGAACATGAAAGAAACGCAGCCTTCG GAACTGGCGCAGGACCCGGCCAACCCCCCCCGGTTCTGGGAGATCACGGA ATCTATGCTGGAGGCAAAGCTCGGGAAGAAGGTTGATGAAATTCTTCCGT GAATGTTGAGATGAGGGGAGTCTTCACTGTTTCGAGGTTTGGGCGAGGTT ATGGAAGCAGCAGGTCCCCCACGCAACGTGATTGAGCAAGAGCTTTGCCG AGACCCTCGACGGCCGTATGGCGGTTCAAGTCGCACTGGTTGGACATATG ATTATTTTTTCGTTAACCGGATGATTGTTTGTTTGCTGCAGTAGTAGAAG CTTGCAACACAGTAGTTGGAACGTAGACGGAGCGCATGCGACATGCCAAC TTCTCCCCTCCGTCTCCCACTCAAAAGTCGTCCCTTGAGTTCGTTTTATG GTATCGGCAATTTCACCCGTTGTCATTTTTGTAGGCATGTGTGTGTGTGT GTGTTTTCGTCCTTTTTATTATGCGGCGGTACCCTCATTTTTCGTGATGA GACGGTACTACACTCTTTCAGTGTATTTTTTCGTACAACTACAACCATCC AGGGTTGCACAGGAGGGGGTAAACACCATGGTTTGTTTCTTGTTTTTGTT TCTTTTCATGCCCCAGCTTCCTCCTGCGGTGCGCGCTGAAATTAATTTTT ATCGCGAGAAGGGTCCAGCCGTCACTTTCCTTCGTCAACGGTGCTAACGT CGAAGATTGGTACTCACGAAAGCTTTTCAACAATATTTCGCTTTCACCCG CAAATTTCGTACATTTTTCACGCCACGAGGAGTCGAACTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig714:18481..21171-

>mRNA_Ecto-sp13_S_contig714.18247.1 ID=mRNA_Ecto-sp13_S_contig714.18247.1|Name=mRNA_Ecto-sp13_S_contig714.18247.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1008bp|location=Sequence derived from alignment at Ecto-sp13_S_contig714:18481..21171- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGATCAGCATCTTCCTCAGAAAGGGTGAAGCCCCTCAGCCAGGACCT
CCGAGGGAAGCACTTCGTCGTCACCGGGGCAAACACAGGAATCGGCTATG
CCACAGCGCGGGAGCTGGCGAAGCTGGGGGCGAAGGTCTCCCTTGCCTGC
CGGAACGCCGAGAGGGGCCAGCAGGCTGTCGAGAAGATGAAGGCGGAGGC
CCTAGAGAAGCCCGTCAAGGAGGGCATGGATCTGCTCGAAGGGCTCGCAG
ACGTGGACGTGCAGGTAGAGGTTCTGGATCTAGGATCGTTGCAGTCCGTC
GTCTCCTTCGCCCAGAGATTCAAGACCTCGGGAGCCAAAGTGGACGTCCT
CATCAACAACGCCGGGATTATGGCGATCCCGGAGCGCAAGGAAACCGTGG
ACGGTTTCGAGATGCAGATCGGCGTCAACCACTTCGGCCCGCACCTCCTG
ACGAGGCTGATGGAGCCCGTGCTCAAGGATGGAGGTCGGGTTGTGTTTCT
GTCCTCGCTTGCGCACGACCAGACACCAGGATTGCCGAAGACCACCCTGG
ACTGGGACAACATCAACTACGAGAAGCCGGACACGTACAGCAACTCTATG
TCGTACGCCCGCTCCAAGCTCGGGAACGTCCTGGACGCGAAGGAGTTCGC
GAAGCGCCTGGCCCCGCGTAAGATCAACACCTACGCCGTTCACCCGGGCG
TCGTCAACACCGAGCTCACGCGCAACATGACGGACAACAGCCTGCCATCT
CTCATCTTCCGCTGGACTGCGCCCTTGACCAAGTTTGCGATGGCGACCCC
TCTCACCGGGGCCCTGACCAGCCTACGGTGTGCCCTGGACCAAGAGCTGG
CCGTGCCAGAGGTCTCTGGCAAGTACTGGGCGAACATGAAAGAAACGCAG
CCTTCGGAACTGGCGCAGGACCCGGCCAACCCCCCCCGGTTCTGGGAGAT
CACGGAATCTATGCTGGAGGCAAAGCTCGGGAAGAAGGTTGATGAAATTC
TTCCGTGA
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