mRNA_Ecto-sp13_S_contig7133.18238.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7133.18238.1
Unique NamemRNA_Ecto-sp13_S_contig7133.18238.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7133.18238.1 vs. uniprot
Match: A0A6H5K892_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K892_9PHAE)

HSP 1 Score: 466 bits (1200), Expect = 8.040e-157
Identity = 323/366 (88.25%), Postives = 328/366 (89.62%), Query Frame = 1 
Query:    1 MQPSLSSLPSSPVDPLDWERVIGPSCCVCGQAYIPAAEVDDEHITGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----KPVLSEXXXXXXXXXXXXXXXXXXXXXXXSLAGSARLAGARSQQASGPGIGRSVGGGSSLPPGSELLESGFSAYGGSVVGFGGGWTGSGFGAGSSMLESIVQISHAGLSDNVRRESLLYDMSQRPARRFRAGEQKPPASEDGASAAEVDGGDDERGGRLSQRQPVDSEEAEGQEESDDPTLCCHCYASLLEQIDEDSRLADREALAYRDFVEALSGIITSEDSGLESVGPTAPGRRRKAEGFPAAXXXXXXXHGSPPAMTPP---GEGSADSTRREGS 1074
            MQPSLSSLPSSPVDPLDWERVIGPSCCVCGQAYIPAAEVDDEHITGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     KPVLSE           XXXXXXXXXXXX LAG ARLAGARSQQASGPGIGRSVGGGSSLPPGSELLESGFSAY GSVVGFGGGWTGSGFGAGSSML+SIVQISHAGLSDNVRRESLLYDMSQRPARRFRAGEQK PAS+DGASAA+VDGGDDERGGRLSQRQP DSEEAEGQEESDDPTLCCHCYASLLEQIDEDSRLADREALAYRDFVE LSGII SED+GLES GPTAPGRRRKAEGFPA XXXXXXX             GEG+ADSTRREGS
Sbjct:    1 MQPSLSSLPSSPVDPLDWERVIGPSCCVCGQAYIPAAEVDDEHITGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLPDSKPVLSEDYFTLARNQRHXXXXXXXXXXXXXLAGGARLAGARSQQASGPGIGRSVGGGSSLPPGSELLESGFSAYDGSVVGFGGGWTGSGFGAGSSMLDSIVQISHAGLSDNVRRESLLYDMSQRPARRFRAGEQKLPASKDGASAAQVDGGDDERGGRLSQRQPADSEEAEGQEESDDPTLCCHCYASLLEQIDEDSRLADREALAYRDFVETLSGIIISEDNGLESAGPTAPGRRRKAEGFPAXXXXXXXXXXXXXXXXXXXXXGEGAADSTRREGS 366
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7133.18238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K892_9PHAE8.040e-15788.25APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7133contigEcto-sp13_S_contig7133:3823..4899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1079
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionAtg6/Beclin
Ec32 orthologEc-07_006420.1
Cds size1077
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463978.9485888-CDS-Ecto-sp13_S_contig7133:3822..48991681463978.9485888-CDS-Ecto-sp13_S_contig7133:3822..4899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7133 3823..4899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7133.18238.1prot_Ecto-sp13_S_contig7133.18238.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7133 3823..4899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7133.18238.1

>prot_Ecto-sp13_S_contig7133.18238.1 ID=prot_Ecto-sp13_S_contig7133.18238.1|Name=mRNA_Ecto-sp13_S_contig7133.18238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=359bp
MQPSLSSLPSSPVDPLDWERVIGPSCCVCGQAYIPAAEVDDEHITGGGGG
GSNGMKHSSPSSRQQGGGGARNGEESYVVLPDSKPVLSEDYFTLARNQHH
AGGGVAAAVASSSLAGSARLAGARSQQASGPGIGRSVGGGSSLPPGSELL
ESGFSAYGGSVVGFGGGWTGSGFGAGSSMLESIVQISHAGLSDNVRRESL
LYDMSQRPARRFRAGEQKPPASEDGASAAEVDGGDDERGGRLSQRQPVDS
EEAEGQEESDDPTLCCHCYASLLEQIDEDSRLADREALAYRDFVEALSGI
ITSEDSGLESVGPTAPGRRRKAEGFPAAAAAAAAAHGSPPAMTPPGEGSA
DSTRREGSA
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mRNA from alignment at Ecto-sp13_S_contig7133:3823..4899+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7133.18238.1 ID=mRNA_Ecto-sp13_S_contig7133.18238.1|Name=mRNA_Ecto-sp13_S_contig7133.18238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7133:3823..4899+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCCGTCACTGTCGTCTCTGCCATCGTCTCCGGTGGATCCTCTGGA
CTGGGAGAGAGTAATCGGCCCGTCGTGCTGCGTGTGCGGGCAAGCTTACA
TTCCAGCAGCCGAGGTCGACGACGAGCACATCACCGGCGGCGGCGGCGGC
GGCAGCAACGGCATGAAGCACAGCAGTCCTTCTTCGCGACAACAAGGCGG
CGGCGGGGCCAGGAACGGGGAGGAGAGCTACGTGGTGCTGCCGGACTCGA
AGCCCGTGCTCTCCGAGGACTACTTCACCCTTGCTCGAAATCAACACCAT
GCCGGCGGCGGTGTCGCCGCTGCGGTGGCATCGTCGTCTCTAGCGGGGAG
CGCGAGACTAGCCGGCGCTCGGTCGCAGCAGGCGTCCGGCCCTGGCATCG
GGAGAAGCGTCGGCGGTGGTTCGTCGCTGCCCCCGGGGTCCGAGCTCCTC
GAGTCCGGGTTCTCGGCGTACGGCGGCTCGGTAGTAGGGTTTGGAGGCGG
ATGGACGGGATCGGGATTCGGGGCGGGGTCGTCCATGCTCGAGAGCATCG
TCCAGATCTCCCACGCGGGGCTCAGCGACAACGTCCGGCGGGAGTCCCTG
CTGTACGACATGTCCCAGCGGCCCGCGCGACGGTTTCGGGCTGGAGAGCA
GAAGCCTCCAGCTAGCGAGGACGGCGCTTCCGCGGCTGAAGTCGACGGCG
GCGATGATGAAAGAGGCGGCCGTTTGTCCCAGCGGCAACCGGTGGACAGC
GAAGAAGCAGAGGGGCAGGAGGAGTCCGACGACCCGACGCTCTGCTGCCA
CTGCTACGCGTCGTTGCTGGAGCAGATAGACGAGGACAGCCGCCTGGCCG
ACCGCGAGGCCCTGGCGTACCGGGACTTCGTCGAGGCCCTCAGCGGCATC
ATCACCTCGGAAGATAGCGGCCTCGAGTCGGTGGGGCCCACCGCTCCCGG
CAGAAGAAGAAAGGCTGAAGGCTTCCCAGCAGCAGCAGCAGCAGCAGCAG
CAGCACATGGTTCTCCTCCCGCTATGACACCACCAGGAGAGGGTTCGGCG
GACTCGACGCGGCGCGAGGGTTCCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7133:3823..4899+

>mRNA_Ecto-sp13_S_contig7133.18238.1 ID=mRNA_Ecto-sp13_S_contig7133.18238.1|Name=mRNA_Ecto-sp13_S_contig7133.18238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7133:3823..4899+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCCGTCACTGTCGTCTCTGCCATCGTCTCCGGTGGATCCTCTGGA
CTGGGAGAGAGTAATCGGCCCGTCGTGCTGCGTGTGCGGGCAAGCTTACA
TTCCAGCAGCCGAGGTCGACGACGAGCACATCACCGGCGGCGGCGGCGGC
GGCAGCAACGGCATGAAGCACAGCAGTCCTTCTTCGCGACAACAAGGCGG
CGGCGGGGCCAGGAACGGGGAGGAGAGCTACGTGGTGCTGCCGGACTCGA
AGCCCGTGCTCTCCGAGGACTACTTCACCCTTGCTCGAAATCAACACCAT
GCCGGCGGCGGTGTCGCCGCTGCGGTGGCATCGTCGTCTCTAGCGGGGAG
CGCGAGACTAGCCGGCGCTCGGTCGCAGCAGGCGTCCGGCCCTGGCATCG
GGAGAAGCGTCGGCGGTGGTTCGTCGCTGCCCCCGGGGTCCGAGCTCCTC
GAGTCCGGGTTCTCGGCGTACGGCGGCTCGGTAGTAGGGTTTGGAGGCGG
ATGGACGGGATCGGGATTCGGGGCGGGGTCGTCCATGCTCGAGAGCATCG
TCCAGATCTCCCACGCGGGGCTCAGCGACAACGTCCGGCGGGAGTCCCTG
CTGTACGACATGTCCCAGCGGCCCGCGCGACGGTTTCGGGCTGGAGAGCA
GAAGCCTCCAGCTAGCGAGGACGGCGCTTCCGCGGCTGAAGTCGACGGCG
GCGATGATGAAAGAGGCGGCCGTTTGTCCCAGCGGCAACCGGTGGACAGC
GAAGAAGCAGAGGGGCAGGAGGAGTCCGACGACCCGACGCTCTGCTGCCA
CTGCTACGCGTCGTTGCTGGAGCAGATAGACGAGGACAGCCGCCTGGCCG
ACCGCGAGGCCCTGGCGTACCGGGACTTCGTCGAGGCCCTCAGCGGCATC
ATCACCTCGGAAGATAGCGGCCTCGAGTCGGTGGGGCCCACCGCTCCCGG
CAGAAGAAGAAAGGCTGAAGGCTTCCCAGCAGCAGCAGCAGCAGCAGCAG
CAGCACATGGTTCTCCTCCCGCTATGACACCACCAGGAGAGGGTTCGGCG
GACTCGACGCGGCGCGAGGGTTCCGCC
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