mRNA_Ecto-sp13_S_contig7131.18234.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7131.18234.1
Unique NamemRNA_Ecto-sp13_S_contig7131.18234.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7131.18234.1 vs. uniprot
Match: D7FL73_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL73_ECTSI)

HSP 1 Score: 861 bits (2224), Expect = 2.080e-302
Identity = 465/499 (93.19%), Postives = 471/499 (94.39%), Query Frame = 1 
Query:   10 RDPSFAKRKWETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTSGGDGGYIEVRPRGVNKGAFVSAILSRQVEMDLMPDFILAMGDEESDEMMYEVVKDFSRGVKGEEPGTPDATATTTQGGPASPGRRGSYQVGATAAVLIASAAAELKRQXXXQLEKEVAEEEARSGGMGSQSHSASRLPSSTMVSASAPADVNAATIAVMAGLEEKFSAAGLVEEKSVDGMMEHEAYFPLSGGSDGXXXXMLRGRASSLAEQGSGGGAATGMKPMKPTSLTMKARVGPGGPRWRGGVLGTPGMGSXXXXXXXXXXGKLGVQCFTCTVGKKPSQARTYVNDIDEVLELLRGLVKVSLSVSRNYSTSHLSDLRGRGRGGSANYDDLSLISAQFHAEASGTLDASGQGVPGSTTTSGGMPIMKSLSVVVMPTHMLPGAAAPMAPGTMSAYFDQIEEGDEDEGGIFF 1506
            RDPSF KRKWETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTS GDGGYIEVRP GVNKGAFVSAILSRQVEMDLMPDFILAMGDEESDEMMYEVVKDFSRGVKGEEPGTPDATATTTQGGP SPGRRGSYQVGATAAVLIASAAAELKRQ   QLEKEVAE EARSGGMGSQSHSA RLPS+TMVSASAPAD+NAATIAVMAGLEEKFS AGL EEKSVDGMMEHEAYFPLSGGSDG    + RGRASSL E GSGGGAAT MKP   TSLTMKARVGPG PRWRGGVLGTPGMGS XXXXXXX  GKLGVQCFTCTVGKKPSQARTYVNDIDEVLE+LRGLVKVSLSVSRNYSTSHLSD+RGRGRGGSANYDDLSLISAQFHAEASG LDASGQGVPGST TSGGMPIMKSLSVVVMPTHMLPGA+APMAPGTMSAYFDQIEEGDEDEGGIFF
Sbjct:  725 RDPSFVKRKWETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTSDGDGGYIEVRPGGVNKGAFVSAILSRQVEMDLMPDFILAMGDEESDEMMYEVVKDFSRGVKGEEPGTPDATATTTQGGPTSPGRRGSYQVGATAAVLIASAAAELKRQQEEQLEKEVAEAEARSGGMGSQSHSAGRLPSATMVSASAPADINAATIAVMAGLEEKFSTAGLGEEKSVDGMMEHEAYFPLSGGSDGGGGGIQRGRASSLVEPGSGGGAATAMKP---TSLTMKARVGPGAPRWRGGVLGTPGMGSSXXXXXXXGAGKLGVQCFTCTVGKKPSQARTYVNDIDEVLEMLRGLVKVSLSVSRNYSTSHLSDMRGRGRGGSANYDDLSLISAQFHAEASGKLDASGQGVPGSTATSGGMPIMKSLSVVVMPTHMLPGASAPMAPGTMSAYFDQIEEGDEDEGGIFF 1220
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BLAST of mRNA_Ecto-sp13_S_contig7131.18234.1 vs. uniprot
Match: V5K3Y9_SACJA (Trehalose-6-phosohate synthase n=1 Tax=Saccharina japonica TaxID=88149 RepID=V5K3Y9_SACJA)

HSP 1 Score: 518 bits (1335), Expect = 1.100e-168
Identity = 324/510 (63.53%), Postives = 351/510 (68.82%), Query Frame = 1 
Query:   19 SFAKRKWETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTSG--GDGGYIEVRPRGVNKGAFVSAILSRQVEMDLMPDFILAMGDEESDEMMYEVVKDFSRGVKGEEPGTPDATATTTQGGPASPGRRGSYQVGATAAVLIASAAAELKRQXXXQLEKEVAEEEARSGGMGSQSHSASRLPSSTMVSA---SAPADVNAATIAVMAGL-----EEKFSAAGLVEEKSVDGMMEHEAYFPLSGGSDGXXXXMLRGRASSLAEQGSGGGAATGMKPMKPTSLTMKARVGPGGPRWRGGVLGTPGMGSXXXXXXXXXXGKLGVQCFTCTVGKKPSQARTYVNDIDEVLELLRGLVKVSLSVSRNYSTSHLSDLRGRGRGGSANYDDLSLISAQFHAEASGTLDASGQGV----PGSTTTSGGMP-IMKSLSVVVMPTHMLPGAAAPMAPGTMSAYFDQIEEGDEDEGGIF 1503
            SF KRKWETLVALRDQSWKQLTRTIMNLYAQRT+GTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRG+    GDGGYIEVRP GVNKGAFVS ILSRQVEM LMPDFILAMGDEESDEMM+E VK+FSRGVKGEEPGTPD  A T QG        GSYQVGATAAVLI SAAAELKRQ          +EEA          + S  P+S ++ A   SAPADV   TI++MAGL     EEK    G        GM+  ++ F   GG+       +RGR+ S+AE                       R   G  RWRGG+ G  G G             LGVQCFTCTVGKKPSQA TYVNDIDEVLELLRGLVKVS SV+RNYSTSHLSD+R  G GGSANYDDLSLISAQFHAE SG  DASGQ V     G     GGM  +MKSLSVVVMPTH+LP  +AP APGTMSAYF+QIEE  ++    F
Sbjct:  810 SFVKRKWETLVALRDQSWKQLTRTIMNLYAQRTHGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGSGSADGDGGYIEVRPGGVNKGAFVSGILSRQVEMGLMPDFILAMGDEESDEMMFEAVKEFSRGVKGEEPGTPDTAAVTAQGAQGG----GSYQVGATAAVLIKSAAAELKRQ----------QEEA--------DETDSLQPASALMGAHPSSAPADVT--TISLMAGLGKHAGEEKTPGGG----PRGSGMLSQDSGFLDKGGA-------VRGRSQSIAEP------------------ERHFRQKSGTERWRGGIPGVGGSGGVAIGASP-----LGVQCFTCTVGKKPSQAATYVNDIDEVLELLRGLVKVSSSVARNYSTSHLSDMRTGGAGGSANYDDLSLISAQFHAEGSGGRDASGQSVMPLGQGGGLAVGGMTGMMKSLSVVVMPTHLLPMRSAPTAPGTMSAYFEQIEERRKEREAFF 1261
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BLAST of mRNA_Ecto-sp13_S_contig7131.18234.1 vs. uniprot
Match: A0A7S2UVC1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVC1_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.440e-46
Identity = 92/160 (57.50%), Postives = 121/160 (75.62%), Query Frame = 1 
Query:    1 WPTRD-PSFAK-----RKWETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTSGG-DGGYIEVRPRGVNKGAFVSAILSRQVEMDLMPDFILAMGDEESDEMMYEVVKDFSRGVKGE 459
            WP ++ P+ A      R WETLV ++DQSW+++T+ IM++Y QRTNGTY+  KGSAL+WQFRDADPEFG+LQSKELEDHLT VLK FSV+ILRG  G    GYIEVRP+GV+KG FV A++ R + MD+ PDF L +GD+ SDE+M+E +   +  ++ E
Sbjct:  567 WPRKELPTDADGQGGGRVWETLVPVQDQSWRRITQNIMDIYVQRTNGTYIEEKGSALIWQFRDADPEFGFLQSKELEDHLTGVLKNFSVDILRGGGGAMSDGYIEVRPQGVSKGVFVEAVVERMMGMDVNPDFALVVGDDSSDEVMFESMSTIAAALQEE 726
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BLAST of mRNA_Ecto-sp13_S_contig7131.18234.1 vs. uniprot
Match: A0A835YZM5_9STRA (Glycosyltransferase family 20-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZM5_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.000e-46
Identity = 87/150 (58.00%), Postives = 112/150 (74.67%), Query Frame = 1 
Query:   37 WETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSV----------------EILRGTSGGDGGYIEVRPRGVNKGAFVSAILSRQVEMDLMPDFILAMGDEESDEMMYEVVKDF 438
            WETLVA+ DQSWK+LT+TIM++Y QRT+GTY+  KGSA+LWQFRDADPEFG+LQSKELEDHL +V+ PF++                E+LRG  G  GGY+EVRP+GVNKGAFV A++ R +     PDF+LA+GDE SDE+M+  ++ F
Sbjct: 1256 WETLVAVHDQSWKELTKTIMDIYVQRTHGTYIEEKGSAVLWQFRDADPEFGFLQSKELEDHLVSVVAPFALXXXXXXXXXXXXXXXXEVLRGGGGSGGGYLEVRPQGVNKGAFVDAMIERMIAQGTAPDFVLALGDEASDEVMFTSIEQF 1405
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BLAST of mRNA_Ecto-sp13_S_contig7131.18234.1 vs. uniprot
Match: K8YR86_NANGC (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YR86_NANGC)

HSP 1 Score: 151 bits (381), Expect = 2.950e-35
Identity = 72/136 (52.94%), Postives = 98/136 (72.06%), Query Frame = 1 
Query:   37 WETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTSGG-DGGYIEVRPRGVNKGAFVSAILSRQVEMDLMPDFILAMGDEESDEMMYEVVKDFS 441
            WE ++   D SW +LT+ IM++Y +RT+GTY+  KGSALLWQ+RDADPEFG +QSKELEDHL+ VL+   VEILRG +    GGY+EVRP GV+KG+F+  +L    E   + DF+L +GD+ SDE M+    D++
Sbjct:  990 WEMMLPSFDSSWMELTQAIMDVYVKRTHGTYIEQKGSALLWQYRDADPEFGHMQSKELEDHLSGVLRGAGVEILRGENKALQGGYLEVRPEGVHKGSFLEKVLGEMAEHGKVVDFLLVVGDDASDESMFTAAADYA 1125
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BLAST of mRNA_Ecto-sp13_S_contig7131.18234.1 vs. uniprot
Match: A0A7S3XN39_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN39_HETAK)

HSP 1 Score: 145 bits (365), Expect = 3.460e-35
Identity = 68/105 (64.76%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:   37 WETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTSGG-DGGYIEVRPRGVNKGAFVSAILSR 348
            WETL  + DQSW+ +TRTIM +Y  RTNGTYV  KG AL+WQFRDADPEFG++QSKELEDHL  VLKPF+V++LRG  G     YIEVRP G++KGAF+  +L R
Sbjct:  255 WETLFPVADQSWRHITRTIMEIYVARTNGTYVEEKGCALIWQFRDADPEFGFMQSKELEDHLKGVLKPFAVDVLRGGGGAMSDAYIEVRPEGLSKGAFLEHVLGR 359
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BLAST of mRNA_Ecto-sp13_S_contig7131.18234.1 vs. uniprot
Match: A0A7S2GVU4_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GVU4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.220e-34
Identity = 72/150 (48.00%), Postives = 100/150 (66.67%), Query Frame = 1 
Query:    1 WPTRDPSFAKRKWETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTSGGDGGYIEVRPRGVNKGAFVSAILSRQVEMDLMP--DFILAMGDEESDEMMYEVVKDFSR 444
            WPT     +KR+WETLV+  D+SW+ +  TIM +Y  RT+G+Y+      +LWQ+RDADPEFG+LQS+ELEDHL+ VL+ F+V+IL G    +GGY+EVRP+GVNKG F + +L    +       DF L +GD+  DE M  V++   R
Sbjct:   13 WPTNKVG-SKRRWETLVSDIDKSWRSIAITIMEVYTSRTHGSYIEETEMKVLWQYRDADPEFGYLQSRELEDHLSNVLRSFAVDILHGGVE-EGGYVEVRPKGVNKGVFSTHVLKNMHKFSTHTKVDFGLVLGDDHCDEPMLSVMRQVGR 160
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BLAST of mRNA_Ecto-sp13_S_contig7131.18234.1 vs. uniprot
Match: A0A7S4QMJ7_9STRA (Trehalose 6-phosphate phosphatase n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QMJ7_9STRA)

HSP 1 Score: 141 bits (355), Expect = 4.740e-34
Identity = 78/174 (44.83%), Postives = 106/174 (60.92%), Query Frame = 1 
Query:    1 WPTRDPSFAKRKWETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTSGGDGGYIEVRPRGVNKGAFVSAILSRQVEMDLMP--DFILAMGDEESDEMMYEVVKDFSRGVK-------GEEPGTPDATATTT 495
            WPT + S  +R+WETLV+  D+SW+ +  TIM +Y  RT+G+Y+      +LWQ+RDADPEFG+LQS+ELEDHL+ VL+ F V+IL G    +GGY+EVRP+GVNKG   + +L    +       DF L +GD+  DE M  V++   R          GEE   P   AT T
Sbjct:   20 WPTNNTS-TRRRWETLVSDIDKSWRSIAITIMEVYTSRTHGSYIEETEMKVLWQYRDADPEFGYLQSRELEDHLSNVLRSFPVDILHGGVE-EGGYVEVRPKGVNKGVLSTHVLKNMHKFSTHTKIDFGLVLGDDHCDEPMLSVMRQVGRRAAECRIARTGEEDNLPPIPATIT 191
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BLAST of mRNA_Ecto-sp13_S_contig7131.18234.1 vs. uniprot
Match: A0A7R9U9U9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9U9_9STRA)

HSP 1 Score: 146 bits (369), Expect = 8.170e-34
Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 1 
Query:   37 WETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTSGG---DGGYIEVRPRGVNKGAFVSAILSRQVEMDLM----------PDFILAMGDEESDEMMYEVVKDFSR 444
            W  L+   D SW  L + IM++Y QRTNGTYV  KG ALLWQ+RDADPEFG +QSKELEDHL + +K F V +LRG S G    GGYIEVRP GV+KG FV+ IL+   ++             PDF+L +GD+ SDE MY+   D++R
Sbjct:  547 WNYLLPNFDMSWTTLVKRIMDVYVQRTNGTYVEVKGCALLWQYRDADPEFGEVQSKELEDHLISAVKNFPVVVLRGESTGREKKGGYIEVRPTGVSKGIFVTHILNHLRDVAARSSAPGPSMKEPDFVLCIGDDSSDEFMYKAATDYAR 695
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BLAST of mRNA_Ecto-sp13_S_contig7131.18234.1 vs. uniprot
Match: A0A7S1UMF2_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMF2_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.810e-33
Identity = 79/174 (45.40%), Postives = 111/174 (63.79%), Query Frame = 1 
Query:    1 WPTRDPSFAKRKWETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSALLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTSGGDGGYIEVRPRGVNKGAFVSAILSRQVEMDLMP--DFILAMGDEESDEMMYEVVKDFSRGVK-------GEEPGTPDATATTT 495
            WPT+  S +KR+WETLV   D+SW+ L  +IM++Y  RT+G+Y+      +LWQ+RDADPEFG+LQ+KELEDHL  VL+ ++V+IL  T   +GGY+EVRP+GVNKG     ++     +      DF LA+GD+  DE M  V++   R V+       GE+P  PD  +T T
Sbjct:  889 WPTKK-SLSKRRWETLVTEGDRSWRPLAISIMDVYQSRTHGSYIEETEMKVLWQYRDADPEFGYLQAKELEDHLANVLRNYAVDILH-TGMEEGGYVEVRPKGVNKGVLAMHVIRNFTNLSTKARLDFALAIGDDHCDEPMLSVMRQIGRRVRAARLAKRGEDP-LPDLPSTIT 1059
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7131.18234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL73_ECTSI2.080e-30293.19Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
V5K3Y9_SACJA1.100e-16863.53Trehalose-6-phosohate synthase n=1 Tax=Saccharina ... [more]
A0A7S2UVC1_9STRA1.440e-4657.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YZM5_9STRA4.000e-4658.00Glycosyltransferase family 20-domain-containing pr... [more]
K8YR86_NANGC2.950e-3552.94Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
A0A7S3XN39_HETAK3.460e-3564.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2GVU4_9STRA2.220e-3448.00Trehalose 6-phosphate phosphatase n=1 Tax=Helicoth... [more]
A0A7S4QMJ7_9STRA4.740e-3444.83Trehalose 6-phosphate phosphatase n=4 Tax=Ditylum ... [more]
A0A7R9U9U9_9STRA8.170e-3452.35Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1UMF2_9STRA1.810e-3345.40Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7131contigEcto-sp13_S_contig7131:304..7283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score140.2
Seed ortholog evalue2.6e-30
Seed eggNOG ortholog159749.K0RRY4
Model size1509
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.Glycosyltransferase family 20
EggNOG OGs2XB3T@2836,COG1877@1,KOG1050@2759
Ec32 ortholog descriptionTrehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase
Ec32 orthologEc-19_005250.1
EC2.4.1.15,3.1.3.12
Cds size1509
COG Functional cat.G
CAZyGT20
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7131.18234.1prot_Ecto-sp13_S_contig7131.18234.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7131 304..7283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463978.596341-CDS-Ecto-sp13_S_contig7131:303..3901681463978.596341-CDS-Ecto-sp13_S_contig7131:303..390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7131 304..390 +
1681463978.6099563-CDS-Ecto-sp13_S_contig7131:865..10231681463978.6099563-CDS-Ecto-sp13_S_contig7131:865..1023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7131 866..1023 +
1681463978.6206613-CDS-Ecto-sp13_S_contig7131:1863..19691681463978.6206613-CDS-Ecto-sp13_S_contig7131:1863..1969Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7131 1864..1969 +
1681463978.631466-CDS-Ecto-sp13_S_contig7131:2555..27411681463978.631466-CDS-Ecto-sp13_S_contig7131:2555..2741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7131 2556..2741 +
1681463978.6424212-CDS-Ecto-sp13_S_contig7131:3242..38511681463978.6424212-CDS-Ecto-sp13_S_contig7131:3242..3851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7131 3243..3851 +
1681463978.6532815-CDS-Ecto-sp13_S_contig7131:4613..47661681463978.6532815-CDS-Ecto-sp13_S_contig7131:4613..4766Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7131 4614..4766 +
1681463978.6633272-CDS-Ecto-sp13_S_contig7131:5335..53951681463978.6633272-CDS-Ecto-sp13_S_contig7131:5335..5395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7131 5336..5395 +
1681463978.677314-CDS-Ecto-sp13_S_contig7131:5673..57871681463978.677314-CDS-Ecto-sp13_S_contig7131:5673..5787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7131 5674..5787 +
1681463978.6886108-CDS-Ecto-sp13_S_contig7131:7247..72831681463978.6886108-CDS-Ecto-sp13_S_contig7131:7247..7283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7131 7248..7283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7131.18234.1

>prot_Ecto-sp13_S_contig7131.18234.1 ID=prot_Ecto-sp13_S_contig7131.18234.1|Name=mRNA_Ecto-sp13_S_contig7131.18234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=503bp
WPTRDPSFAKRKWETLVALRDQSWKQLTRTIMNLYAQRTNGTYVVNKGSA
LLWQFRDADPEFGWLQSKELEDHLTTVLKPFSVEILRGTSGGDGGYIEVR
PRGVNKGAFVSAILSRQVEMDLMPDFILAMGDEESDEMMYEVVKDFSRGV
KGEEPGTPDATATTTQGGPASPGRRGSYQVGATAAVLIASAAAELKRQQE
EQLEKEVAEEEARSGGMGSQSHSASRLPSSTMVSASAPADVNAATIAVMA
GLEEKFSAAGLVEEKSVDGMMEHEAYFPLSGGSDGGGGGMLRGRASSLAE
QGSGGGAATGMKPMKPTSLTMKARVGPGGPRWRGGVLGTPGMGSSPGSGS
IVGAGKLGVQCFTCTVGKKPSQARTYVNDIDEVLELLRGLVKVSLSVSRN
YSTSHLSDLRGRGRGGSANYDDLSLISAQFHAEASGTLDASGQGVPGSTT
TSGGMPIMKSLSVVVMPTHMLPGAAAPMAPGTMSAYFDQIEEGDEDEGGI
FF*
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mRNA from alignment at Ecto-sp13_S_contig7131:304..7283+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7131.18234.1 ID=mRNA_Ecto-sp13_S_contig7131.18234.1|Name=mRNA_Ecto-sp13_S_contig7131.18234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6980bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7131:304..7283+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCCGACTAGGGATCCGTCGTTCGCGAAGCGAAAATGGGAGACGCTAGT
GGCTCTTCGAGATCAGAGCTGGAAGCAGCTCACGAGGGTAAGCTATCTGC
CTTTTGAGGAGGTTGAGGATGGGGGGGGCAGGGGGGGGGGCAAGATTTGA
GTGTAAAGCCGGAGAGAGAAGATGACATTTCCGGGAGTTGAGTGGATTGT
GCTTGGTAGGGGCGATGGCAGACGATAAGTAGAAGACTGAGACTTCAGTA
CGACAGAGGGTTGAGTGTCCGTTTCCACGCAGAGAGGGGGGTTACCTGAG
AGACTGCGTCTGATTGGTCTGATCTGTCGAACGGTCCGTTGAGGGAGCGC
AGCGCAGCAGGCATGCTAGAGCGAGCGAGGGGACGCAGAGAGGCACCGTC
ATGCGAACGAATGCAAGCGTCAGCTCCGAGTGGCCCTCCCTTCCCTTTCC
CGATGATAACCGGGATGGCGTTCGAGTTGACTGTTGACCGTTGTGCGTGC
CTGCATTTCGTTTACGTTCTGCTGTCCCCTATCCCCTCCCCGCCCCTCCT
CGTCTTCGCCAGACAATCATGAACTTGTACGCTCAGCGCACGAACGGGAC
CTACGTGGTGAACAAGGGCTCGGCTCTGCTGTGGCAGTTCAGGGACGCCG
ACCCTGAGTTTGGCTGGCTGCAGTCCAAGGAGCTGGAGGACCACCTGACC
ACGGTGCTCAAGCCCTTCAGGTGAAAGCTTGGACTCGCATGGCGCCATGG
CGCCCCGTTTTTGTGTGTGACCTGTGTGTGTGTGTGTGATTGAGTTGGCA
TCCACCGCGCTTACCGGCTGACCAATCAAAGACGTCAGTCTCAGTGCGGG
TGGTGTCGTGTGTACTGTGTTTTTGAATTGGTATCGACCGCGCTTACCGG
CTGATGATGAAATGACGTCAGTCTTGCAGCGGGATATAAAACACTAACAC
TTTGTAGTCAAAGGGTTTTTCCGACGGGGGGGGGGGCAGGAGTTGGAGGG
CAGTGCGTGTGCGTGTTGTAGGTCTGCTGGCCTGAGGTGATGTAAATGTG
GATGCGCATCGTCCTTCGTTCGTTGCGACCGGCTGGACACGGGTATCGAG
ATCCATCGAGCCGAGATAGCACGAAACAATACATGTATTATTCCCCACAG
AGTTGTTGGAAGACAGACAAAACAGACACACAGCATACGTACAGGAATAG
GCTCGAAATAAGCCCAGTATGCAGCCGGTTTCCCTCCACTCACTGCAAAG
ACTCCGACACATTCCCTTCGCCTGCTGCGGTTATACCTCGAACGGGTAGT
GTTTCTGTGTATTATTTTTTCCTGATTTATCTGCCTCTCGTATCCTCCAC
GCCTGAGTTGATCTAGTTGGCACCGATAGTCTATCTCTGTAGGTCGTTGG
TATTACTGTCATGAACATGAAAACTGCTGCCCAACCCAGCGTCACTCACC
CTGGCCCTCCTCCTCCTCCTCCTCCCCTGACGCTTCCGGTCCTGCTCTCG
TTTATTCTGTGACGGAATTTATGCACACACATGACGTACACATGATGTAC
ACATACACAGCGTGGAGATCCTGCGGGGCACGTCGGGCGGGGATGGGGGG
TACATCGAGGTCCGCCCCCGGGGCGTGAACAAGGGGGCCTTCGTATCGGC
TATCTTGTCCAGACAGGTATCTGTAGCACTATGTATTGTAACACTTCTAT
TCAGATATTATGATAGCTTGCGGTCGTTGCGGACAATGGTCAAAGGGCAG
TTTGTGCATGACGGCGCAATTGTTGTTGTTGGCACGTGGGTTGTTTGTTA
TTATGCGGGTGGGGGGCGGGATGGGGACCGGGGTCGCCGCGGACGCGGTG
ATGGGGTGGGGACAGGAATCAGGTTGCACCTGTTCGACTATATTAGTTGT
TCTTGTGACGTCTGCCGGGTCCGTAGAGTATCGGCGTTACTGGTGGTGGT
GTTGGTGCTTCTTGGAGGTTTAGAGCGAGGGTGCGAGCTGTGACCTGTGC
CTTGTGCTTTGATGTTTGCCTTGTTGAAGGAAAGCTGGCAAGACGCGCAC
AGACATAACCCCCGCTCACGGGAGCCCCAGATGGTGGCCTTTCTTGAAGA
AACATTTTCCGGCTTTCGCGGAACCGAGACTGACTTCCGCTCAGTGGTCA
GCCGGTCGATACTAACATCCCTTTTGGCTGTGGTTTTCTTATTCCGTGTA
TTTTCTGAAAACAAACACGCGCGTCCGCTTGCGCTCGGTCAACCACCCAC
AGGTGGAGATGGACCTGATGCCGGACTTCATCCTGGCCATGGGAGACGAG
GAGTCGGACGAGATGATGTACGAGGTGGTGAAGGACTTCAGCAGGGGTGT
CAAGGGCGAGGAGCCCGGCACACCGGACGCGACGGCGACAACCACGCAGG
GGGGACCCGCTTCTCCGGGGCGCCGGGGCTCCTATCAGGTACACATGAAG
TTGATACTGCGGTGCCCCTTCAGTGTTGATATCGCGGTGCCCCTTCGCTT
GTAGTTGCGGTGCCCCTTCGCTTGTAGTTGCTCCTTGTGGTGTGGTGTTT
GGGAGCGGGTGTTGACTTGGGATTCTGTTCCCCCCGAGATCTGGGGATTG
TTGTGCATGGTGTACATCCTTGTGAAGGAGGTGTTTGGTTGGTGACGGTG
CTGTTGTGCTCCCGGCGCTCGCTGTTGTTGTTCCAGCAAGTGAGTAATTG
CCGATACCCCCCCCCTTCTCTGTCGGTATTCAACGCGCCCTCCCGGCACC
CCTCGATTGTAAGCGCTACTGTTGTACACATACCCTGGTCACGACCTTTG
ATTTTATGCACTACTTTATTAAAAATGTACATACACCCAGATCGCGACCT
TCACAAGCTGCCTGCAACACTGCTGCTGACATACCACCTTTAACACTACT
CGTCATTCCGTCCGAACACACCATTCTCCCCGTACGTAGGTCGGCGCGAC
TGCGGCCGTGCTCATCGCGTCCGCGGCCGCCGAGCTAAAGCGCCAGCAGG
AAGAGCAGCTGGAGAAGGAGGTGGCGGAGGAGGAGGCCCGCTCGGGGGGT
ATGGGGTCCCAGTCGCACTCTGCGAGCCGCCTTCCCTCCTCCACCATGGT
GTCGGCCTCTGCCCCCGCAGACGTCAACGCTGCCACGATAGCGGTCATGG
CCGGCCTCGAAGAAAAGTTCTCAGCCGCCGGACTAGTTGAGGAGAAGAGC
GTGGACGGCATGATGGAGCACGAGGCCTACTTCCCGCTGTCCGGGGGCAG
CGACGGCGGCGGCGGGGGCATGCTGAGGGGGCGGGCGTCCAGCCTGGCGG
AACAAGGGAGCGGCGGCGGAGCCGCGACGGGCATGAAGCCGATGAAGCCG
ACGTCGTTGACGATGAAGGCGAGGGTGGGCCCCGGGGGCCCGCGGTGGCG
AGGGGGCGTGTTGGGTACCCCTGGGATGGGATCGTCCCCCGGTTCGGGTA
GTATCGTCGGGGCTGGGAAGCTGGGGGTGCAGTGTTTCACGTGCACGGTC
GGGAAGAAGCCTAGCCAGGCCAGGACGTACGTGAACGACATCGATGAGGT
GAGGGGCTAGTCTTTGGGGAGGGGGGAGGACGCTTGCTCTTGTGTTGTTG
TTGATGATGATGGTGATGTGTATGTTTTGCACTTTTGTTACTTGTGCAGG
GCGCTTTTCTGTGTTTTTTCTTACAAAGGTATGATGATCACAACTAGTGA
AATGATACGCTATGACTCTGCCGTTGGCTAGCAGTCTCAGGTAGGCATGA
TTGGAACGACTCTCCCGGCATCTGTATTGAAACGGTGACGCCCAAATATT
TCAGACAAATACATGGCTCCAACATCCACAATGAATCCCCTGAGGAAAGC
GAGGCGTGTGTTGTTTGTCCACGCCCATCTCCGCGGATGACTCCTCGAGA
CCTTGAGATAGCCCGCCCGACAATCGATATATTGGTTGCCGTCAGTTAGG
ACAGCGAAGCAAAGGGCGGGAATTATTTGTCGAGTTTTATTTCACACCTC
ATGTCTTCGCAAACAGCGTTCCATTATTGCTCACCACTGATGATACACCA
GTGATAGTTGATATTGTTGCCGTCAGAAACGCGAAGCACTATGCAGGCAC
CATTTTTAGTCGAGTTTTGACCCCTCATATCTTCGGGAAAAGCGGTCATT
AGTAGATAGTGCTTCTGGTTTCCGCGTTGCTAACGCCTCCGGTTTCCGCG
TCAACAGCAGCGCTTCCGAAGAACTTTCGCAGTCGTTGCGTCGACGGACA
AAGAAGTCATGATCCTCTCGTCTGCGTCTCCCCCCGCACCCACTCATACG
CCGAATTCAGGTTCTGGAGTTGTTGAGAGGACTAGTGAAGGTGTCGTTGT
CAGTGTCGAGGAACTACTCCACCTCGCACCTGAGCGACCTGCGCGGTCGG
GGCCGGGGGGGCTCCGCGAACTACGACGACTTGTCCCTCATTTCGGCGCA
ATTCCACGCCGAGGTATGTATGGTACTGACACAGTACAGCAGTATGCATG
GCAGCGAACCTGTCTGTAGATCTATGCCTCTTTCGTAGATGGGACCGAGG
TGCGGTTCAATAAGCGTGACGATGTTTCCGTCTCTAGATATATGTTGTTT
TAGTAGATGTGCAGGCCTTGCTTGGCTCGGTGATTTATTTTTATTTTAGG
TTACGTGGCATCAGAGGGGAACGGGAGGAGGGCTGGCACAATAACACGCC
GAACCGTTGTCTTTCGGCGGTGTTGATTTGGCGCAGGGTCGCAATGGCAT
GGGTTAGCTAGAAGGCTCGTGGGACGCGAGATATATTTGTGTACATCTCG
CCCTGTGTTGCAGATACACTCGCTAGAGGCGGCGTATTTTGTCGAGGCAT
TGTTGAGGGGAGGATTACATCGGGTGTTGCTTTTCCAGAACGCCGATGAG
CATACAAGTACGTACACACCGCTTCTTGTCCTCCATCGATGCGGCACATA
ACATGCGTACCGACTCTCTCTGCGGTCGATCGATGGATGGATCGCCCACC
ACCTTTCTGTGTTGTTTGTCTTGGTCTCGCAGGCTTCCGGAACACTCGAC
GCTTCCGGGCAAGGAGTGCCGGGATCAACGACAACATCGGGGGTGAGTTC
CGTACGACGGTCTCTTCTCTTGTCACAAGCAATGGTGGCGATGGATGTGG
TTGTGGTTGTTGTATCGGTGCTGATGTTGGGTGTTGGTGTTGTTCGAGCG
TGATGAGGACGCTGGTTCTTGATGCGAAGTGTTTCAACGTTTTCCTGAAT
CGCAAGACTCGTGTCGGTTCAACCCACGCCTGTTCTTCTGGTCGTTCGGA
GTTGGCTGTTGTTGATGGACGTGAATTGTGAGCTTAACGCTTGGCTTTTG
CTGTTGACTTACGTTGGCAGGGTATGCCGATAATGAAGAGCTTGTCGGTG
GTGGTGATGCCCACGCACATGCTTCCTGGAGCGGCGGCTCCGATGGCACC
TGGTACCATGTCAGCATACTTCGACCAGATCGAGGTACGATACGATTTTT
CCAGTTGGTGTTTGAACACACCTCTTCTTGTTAATGAGAATAGTGATATC
GCGGTATGCTGCTTGGGAATCGTAGACACACAGGTAGTGCTTTGCTAACG
CAAAGAAATCAATACATACCCCTTCTGTGTTCTACCCTTATCTATGGAGA
GAGATGGATTAATTGTGTTTTATTTATGGGTTTCAATAAGTCATCTTGGC
GCTGGCTCTTTTCGTGCTTGAATCCAATTTATCGAAAGAAAGCAACCTGG
CCGCCGCTTAGATGTCCCACGTTCTTCTGCTGTGATCAGTGGAGGACACC
ATGAAGAGGCGTCCTGTGTGTGCTTGCACGTTCAGGTTTGCTACTTGAGC
TGAAATATCGAAGGTCGTAAGCAGTCTCTGAAAACAGTCCGTAATCTGCG
CCAGAACCCAATATTTGTCGCAGCCGTGCTCACCTGCCAGAGACCGTAAA
CCCCCGAACGGAGGTTCGTCAAAAGTAACTGGTGGCATCAGCCACTGCAG
TGAACACACGGTTCAGGAGATTGGGGTCAGTAGCCGCGAGCACAAGCAGA
ACAAGACAGGGTGTTGGTCTATTTTTCAGATATCGTAGGCCGCCGCTCAG
ATCCTCCGTATCACCACCCAAGAAGCAATTTCACTCGCGAACACACACAC
TGCTGCTTTAGGGTGTCCTCAAGTGCTACCGGTAGAATGTGTAATGTCTA
ATGCCAAACTGCCGTAATTTGAGCGCCTGCCGTTCTGGCTGTGGGCCGGA
ATTTAGACTAGCGTAGATTTTGAATTCCATCTTGATTTCAGAGGAGGCGT
GTGGAGGTAGACGCGTGAAATGCTTGAGCAGGCGCTACTGCCGCCCTGCG
TGAGAATTAGCGCGTATCCGTTTTCCCGAATCCCTCCGACTGCCTTTTTG
TGTTTCGTGTGTGTGTGGCTTGCGGTGCTCTTCCGTTTTTTGTTTCAAAA
TAACGTCGTCAAAACATGAAAGTTGCTTGTCTGCAGGCCTTCACGAAAAA
TAAAATCTTTCGTTGGATTTTGTCTTGGCGCTACATTTTATTTTTCCGAT
ATCTGCTCAGTGCCTGCTCGGTTTGTCAGTCGTCGGTCTGGCGGCCACCG
CGTTGGATTGGATCGGTACTAGGAACGTTGGGGTTTGTGCTGGATAGAGA
GCTCATCAAGACGTTTCCCCCAAGTTTACGATAACGGTAGCACCAACACC
ATGCACTCCTATCTTACCGTAAAGGGCCCAGCAAGATTTCCCCCTGCCAA
CGATAACAAGAGCACCATCCTACAACATGAACAAGGACCACGAAAAGCAT
CATGATCGATCAACAACAGTGAACAGCCCCACCCCGACAGCATGCACTCC
TGCCTCGCCATACAGAGCCATCACCACGAGATCATGACAACAACACGAAC
CCCTCCTTCTCCCTTGCCGCCAAATCAAACGACGTGGTCTGCAGGAAGGA
GACGAGGATGAAGGGGGCATCTTTTTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7131:304..7283+

>mRNA_Ecto-sp13_S_contig7131.18234.1 ID=mRNA_Ecto-sp13_S_contig7131.18234.1|Name=mRNA_Ecto-sp13_S_contig7131.18234.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1509bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7131:304..7283+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCCGACTAGGGATCCGTCGTTCGCGAAGCGAAAATGGGAGACGCTAGT
GGCTCTTCGAGATCAGAGCTGGAAGCAGCTCACGAGGACAATCATGAACT
TGTACGCTCAGCGCACGAACGGGACCTACGTGGTGAACAAGGGCTCGGCT
CTGCTGTGGCAGTTCAGGGACGCCGACCCTGAGTTTGGCTGGCTGCAGTC
CAAGGAGCTGGAGGACCACCTGACCACGGTGCTCAAGCCCTTCAGCGTGG
AGATCCTGCGGGGCACGTCGGGCGGGGATGGGGGGTACATCGAGGTCCGC
CCCCGGGGCGTGAACAAGGGGGCCTTCGTATCGGCTATCTTGTCCAGACA
GGTGGAGATGGACCTGATGCCGGACTTCATCCTGGCCATGGGAGACGAGG
AGTCGGACGAGATGATGTACGAGGTGGTGAAGGACTTCAGCAGGGGTGTC
AAGGGCGAGGAGCCCGGCACACCGGACGCGACGGCGACAACCACGCAGGG
GGGACCCGCTTCTCCGGGGCGCCGGGGCTCCTATCAGGTCGGCGCGACTG
CGGCCGTGCTCATCGCGTCCGCGGCCGCCGAGCTAAAGCGCCAGCAGGAA
GAGCAGCTGGAGAAGGAGGTGGCGGAGGAGGAGGCCCGCTCGGGGGGTAT
GGGGTCCCAGTCGCACTCTGCGAGCCGCCTTCCCTCCTCCACCATGGTGT
CGGCCTCTGCCCCCGCAGACGTCAACGCTGCCACGATAGCGGTCATGGCC
GGCCTCGAAGAAAAGTTCTCAGCCGCCGGACTAGTTGAGGAGAAGAGCGT
GGACGGCATGATGGAGCACGAGGCCTACTTCCCGCTGTCCGGGGGCAGCG
ACGGCGGCGGCGGGGGCATGCTGAGGGGGCGGGCGTCCAGCCTGGCGGAA
CAAGGGAGCGGCGGCGGAGCCGCGACGGGCATGAAGCCGATGAAGCCGAC
GTCGTTGACGATGAAGGCGAGGGTGGGCCCCGGGGGCCCGCGGTGGCGAG
GGGGCGTGTTGGGTACCCCTGGGATGGGATCGTCCCCCGGTTCGGGTAGT
ATCGTCGGGGCTGGGAAGCTGGGGGTGCAGTGTTTCACGTGCACGGTCGG
GAAGAAGCCTAGCCAGGCCAGGACGTACGTGAACGACATCGATGAGGTTC
TGGAGTTGTTGAGAGGACTAGTGAAGGTGTCGTTGTCAGTGTCGAGGAAC
TACTCCACCTCGCACCTGAGCGACCTGCGCGGTCGGGGCCGGGGGGGCTC
CGCGAACTACGACGACTTGTCCCTCATTTCGGCGCAATTCCACGCCGAGG
CTTCCGGAACACTCGACGCTTCCGGGCAAGGAGTGCCGGGATCAACGACA
ACATCGGGGGGTATGCCGATAATGAAGAGCTTGTCGGTGGTGGTGATGCC
CACGCACATGCTTCCTGGAGCGGCGGCTCCGATGGCACCTGGTACCATGT
CAGCATACTTCGACCAGATCGAGGAAGGAGACGAGGATGAAGGGGGCATC
TTTTTCTAG
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