mRNA_Ecto-sp13_S_contig7122.18223.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7122.18223.1
Unique NamemRNA_Ecto-sp13_S_contig7122.18223.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7122.18223.1 vs. uniprot
Match: D7G5R3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R3_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 2.510e-86
Identity = 158/178 (88.76%), Postives = 165/178 (92.70%), Query Frame = 1 
Query:   31 RTQGLGVSNLFHFFLLQSEGGKRESMERKARLSLEIPGETMQPVAEKREGATGGLFKETESSKTRAKAVRTSKSGNRSSTELMPSLKKGARPSTANSKGTSSDPAMNTARDESRNAPGSSQVDDPAAKEGDSSASGRRRSSVSRRSSLAEEAMMRDRLITSASFQHGLTTLGFKISTE 564
            + +GLGVSNLFHFFLLQSEGGKRESMERKA  SLE  GETM+PVAEKREG TGGLFK+TESSKTRAKAVRTSKSGNR+STELMPSLKKGARPSTANSK TSSDPAMNTARDES NA GSSQ+DDPA KEGDSS SGRRRSS+SRRSSLAEEAMMRDRLITSASFQHGL TLGF ISTE
Sbjct:  139 KEKGLGVSNLFHFFLLQSEGGKRESMERKASSSLETSGETMEPVAEKREGVTGGLFKDTESSKTRAKAVRTSKSGNRASTELMPSLKKGARPSTANSKRTSSDPAMNTARDESSNASGSSQIDDPATKEGDSSTSGRRRSSMSRRSSLAEEAMMRDRLITSASFQHGLATLGFNISTE 316
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BLAST of mRNA_Ecto-sp13_S_contig7122.18223.1 vs. uniprot
Match: A0A6H5JYN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYN0_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 5.290e-58
Identity = 125/187 (66.84%), Postives = 139/187 (74.33%), Query Frame = 1 
Query:   31 RTQGLGVSNLFHFFLLQSEGGKRESMERKARLSLEIPGETMQPVAEKREGATGGLFKETESSKTRAKAVRTSKSGNRSSTELMPSLKKGARPSTANSKGTSSDPAMNTARDESRNAPGSSQVDDPAAKEGDSSASGRRRSSVSRRSSLAEEAMMRDRLITSASFQHGLTTLGFKISTEARIMQNDYK 591
            + +GLGVSNLF+FFLLQSE GKRESMERKA  SLE PGETM+PVAEKREGATGGLFK+TESSKTRAKA R+     R+STEL+  L +    S        S   +        +A GSSQVDDPA KEGDSS SGR     S  SSLAEEAMMRDRLITSASFQHGLTTLGFKISTEA+I +NDY+
Sbjct:  139 KEKGLGVSNLFYFFLLQSEDGKRESMERKASSSLETPGETMEPVAEKREGATGGLFKDTESSKTRAKAARS-----RASTELVDRLNRRRYLSI-------SAIMVEQCATIVVSAAGSSQVDDPATKEGDSSTSGRXXXXXSXXSSLAEEAMMRDRLITSASFQHGLTTLGFKISTEAKITRNDYE 313
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7122.18223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5R3_ECTSI2.510e-8688.76EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JYN0_9PHAE5.290e-5866.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7122contigEcto-sp13_S_contig7122:4707..7290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size596
Hectar predicted targeting categoryother localisation
Exons5
Cds size594
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463977.5778544-CDS-Ecto-sp13_S_contig7122:4706..48361681463977.5778544-CDS-Ecto-sp13_S_contig7122:4706..4836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7122 4707..4836 -
1681463977.5888112-CDS-Ecto-sp13_S_contig7122:5339..54211681463977.5888112-CDS-Ecto-sp13_S_contig7122:5339..5421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7122 5340..5421 -
1681463977.5994122-CDS-Ecto-sp13_S_contig7122:6054..61601681463977.5994122-CDS-Ecto-sp13_S_contig7122:6054..6160Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7122 6055..6160 -
1681463977.610414-CDS-Ecto-sp13_S_contig7122:6503..66141681463977.610414-CDS-Ecto-sp13_S_contig7122:6503..6614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7122 6504..6614 -
1681463977.6256652-CDS-Ecto-sp13_S_contig7122:7125..72901681463977.6256652-CDS-Ecto-sp13_S_contig7122:7125..7290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7122 7126..7290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7122.18223.1prot_Ecto-sp13_S_contig7122.18223.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7122 4707..7290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7122.18223.1

>prot_Ecto-sp13_S_contig7122.18223.1 ID=prot_Ecto-sp13_S_contig7122.18223.1|Name=mRNA_Ecto-sp13_S_contig7122.18223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
MYSPHGASFHRTQGLGVSNLFHFFLLQSEGGKRESMERKARLSLEIPGET
MQPVAEKREGATGGLFKETESSKTRAKAVRTSKSGNRSSTELMPSLKKGA
RPSTANSKGTSSDPAMNTARDESRNAPGSSQVDDPAAKEGDSSASGRRRS
SVSRRSSLAEEAMMRDRLITSASFQHGLTTLGFKISTEARIMQNDYKT
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mRNA from alignment at Ecto-sp13_S_contig7122:4707..7290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7122.18223.1 ID=mRNA_Ecto-sp13_S_contig7122.18223.1|Name=mRNA_Ecto-sp13_S_contig7122.18223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2584bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7122:4707..7290- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATTCTCCGCATGGCGCATCCTTTCATCGGACCCAGGGGTTGGGCGT
GAGCAACCTCTTCCACTTTTTCCTGCTTCAATCCGAGGGCGGGAAACGCG
AGTCTATGGAACGGAAAGCAAGGTTATCGCTGGAAATACCGGGAGAAACC
ATGCAACCCGTCGCCGTGAGTTTTCAACGAAACCCTGAAAAGCGTTGGGT
TCATGACGATGCACGTAGTTGAACATTAGGTGTTATACCTACTTGACAGG
GAACCCCGCGTGATATTCGCAGGCCCTGGACGAAGTGTAATGAAGATAAT
ATAGGTTTTAGCGCGTAGGCCACCCGTACCCATTGCTTGAAAACAAAAAT
GTGCTTGCCAGGGTAAGGCCATGATAATGCACTCGCAAAGTGTCAAGCAG
CTGCCGTGGCCGCCAGAGCGATCACGTCTATGACGAGACCGATCACCCCG
TGAAATGCGTAACACCTTACCTATTTTAGCAGCAAGAACCTCCTAGAACG
CTGCCTGATTACGATTTCACCCCACAGATGATTCGACCTTCAAAGTTATT
CCGTAGACACGCTACTTTCTTTCTGCTTTTTTTCGCCGTTCGATCTATCC
CCGACCGGACCCACCCCCTTGAGCGCCAGACGTTTGGTTTTCGTTGCGAT
GTCGTGATTGGTTGCTGCCGCTGCAGGAAAAACGCGAGGGTGCTACGGGG
GGCTTGTTCAAAGAAACAGAATCCTCCAAAACAAGGGCTAAGGCTGTGCG
GACCTCCAAGTCCGGGAACAGGTCGTCCACAGAGCTGGTGGGTCAAGCAC
GCATGCATTGTTTCCACCGAGAAATCTGTGGCAATCTCGTGGATTATGGT
TCCTGTTGTGCTCTGGGTGTGGGTTGGGGGGGGGGAGGATCCGACGCGCA
GGGAGGGGGGGTAACGCCGGTCTTGAAGCCTGCTGAGCTTGCGTTTGCTG
CAGCGCGTGCCTGCTTCGGACGTACGCGCGTTGCCTGAAAGGTGCAAGCT
TGCTTTTCACGGCTTCAACCTGTGCCCTCTACGGTTGCCTTTGCCCAACA
AAACCACAAACGAAACCAGCGTGCACTTGAGCGTACTTTCAACCCGTAGT
GTACGGCGACACCTCCCACGTTCTCTCTAGATGCCGTCGCTGAAGAAAGG
CGCCCGGCCGAGCACGGCCAACTCGAAAGGTACTTCGTCAGACCCAGCAA
TGAACACCGCGCGGGATGAATCGAGGAATGCTCCCGGTAAGTAAGAGTGG
CAGGCAACAGGCATTTTCCTCGGAAAGAGCTTGTTCATGTTTTATGGAGA
CCTACATACCTTCATCCTTCTCTTTCTAAATCTCTCTGCGCGAGGTCTGC
GAAATGAGTCCATCCCCAACGATTTCGAATACTGCGCTTCCGGTCGATGA
GTCCAGACGGTTCACGTGGCGTCTCTCTATATGCTTCTGGGATGTTTAAA
GGTGCTCCGATGAATGTCTCTGCGGAGGTGCCATGTTGGAGTGTTGTGGT
CGAAACAGACCTGAAACCTTGGCCACAACCGCCACTGAAATGTGTATTTT
GCCATTCTGTGGCAGGTACCCATAGCTGGAAGCGTAAGCGCTTTGCCCCT
CTACGAAGAAAAACGTGTCTACCTCCCGCAGGCCGCCAAAGTCTATGTAT
GGCATGCATCTCGACCGAAAGCGGTGCAGCAGCATCTGTACTTATCATGT
GTTTGACTCTAGGGGTAGCGAGCTTAGCTGTTCACGCAATTGATCCGTCC
ATGCTTACGCGGCACATACCGACAGAACACATGAATGGACCGCCTGAACC
GGCCACGCTACATCACAATCCCGGTGATCATGGTCGAACGATGTGCGACC
ATCGTTGTTTCAACCGCAGGCTCTTCCCAGGTTGACGATCCCGCGGCCAA
AGAAGGGGATTCTTCGGCGTCGGGACGAAGAAGAAGCAGCGTATCTCGGA
GGTGAGGCTCGCCGTGGTGCAGGACCGGAAGAAGGGATGGCGGAAGTGCA
ACCCCCTTCTCACGGCCGAGTTAGTGCTCAAACCTTGCGGATCACTAACA
AAGCCGGTGCTACTTTCTGTTGTAGAATCACACGCACAAGATAGTGTTGT
CGGTGATCTCCAGGCGAACGTCTGACCAACAACGCTCCGATCTCTACGCC
TAACTCCGGTAGATTAAGTCTCATGTGATGGCGTCTTGGTTCCCATCAGG
CGGTGGTGGCATCAAGATTAAATAATAAATGTAATGATGCCACAACGATG
ACAGTATTATCGACGACGCAGCCAAAGCCTTGGCCCATCGGTTCGATCAT
ATGGGTGGTGCAGTTGTGGACGGAGCCAAATGTTTTCACTGAGAGAGTGC
TTAGCCTTGTCAGTCGGACTGTTTTCACTGAGAGAATGCTTAATGTGACA
GTCCCGTCCATGTCAAACGCAAACCGTTGCTTTTGCTTCGTCGCGACTGC
ATAGGTCGTCTTTGGCGGAGGAGGCCATGATGCGCGACAGGCTCATCACG
TCCGCCTCCTTTCAGCACGGCTTGACAACGCTTGGTTTCAAGATCAGCAC
CGAGGCGAGGATAATGCAAAATGATTACAAGACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7122:4707..7290-

>mRNA_Ecto-sp13_S_contig7122.18223.1 ID=mRNA_Ecto-sp13_S_contig7122.18223.1|Name=mRNA_Ecto-sp13_S_contig7122.18223.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7122:4707..7290- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATTCTCCGCATGGCGCATCCTTTCATCGGACCCAGGGGTTGGGCGT
GAGCAACCTCTTCCACTTTTTCCTGCTTCAATCCGAGGGCGGGAAACGCG
AGTCTATGGAACGGAAAGCAAGGTTATCGCTGGAAATACCGGGAGAAACC
ATGCAACCCGTCGCCGAAAAACGCGAGGGTGCTACGGGGGGCTTGTTCAA
AGAAACAGAATCCTCCAAAACAAGGGCTAAGGCTGTGCGGACCTCCAAGT
CCGGGAACAGGTCGTCCACAGAGCTGATGCCGTCGCTGAAGAAAGGCGCC
CGGCCGAGCACGGCCAACTCGAAAGGTACTTCGTCAGACCCAGCAATGAA
CACCGCGCGGGATGAATCGAGGAATGCTCCCGGCTCTTCCCAGGTTGACG
ATCCCGCGGCCAAAGAAGGGGATTCTTCGGCGTCGGGACGAAGAAGAAGC
AGCGTATCTCGGAGGTCGTCTTTGGCGGAGGAGGCCATGATGCGCGACAG
GCTCATCACGTCCGCCTCCTTTCAGCACGGCTTGACAACGCTTGGTTTCA
AGATCAGCACCGAGGCGAGGATAATGCAAAATGATTACAAGACT
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