mRNA_Ecto-sp13_S_contig711.18202.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig711.18202.1
Unique NamemRNA_Ecto-sp13_S_contig711.18202.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18202.1 vs. uniprot
Match: D7FPK3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK3_ECTSI)

HSP 1 Score: 1172 bits (3033), Expect = 0.000e+0
Identity = 660/706 (93.48%), Postives = 669/706 (94.76%), Query Frame = 3 
Query:    3 DAYTMSRTMAGENMIKALETRFTKVRSTSADLDRVGAFYGRIIELCVGNPPKDNRHLRALEEQVFLSKQQTTDLSGKVQKLLFEKDAIERLGIDGLRVQLARTKAVRQKVNARAEQLREQIEKNVKSERRGLKAREVATHLDGSSTLPRGTTVLDRDHPSMHGVGVTALVAAGKADGAARRAQTQFRLFAEEELEREGREEALEQLAMLVGAEHVDDIAEKFKXXXXXXXXXXXXXXXXTVTVEKLRKKIERSQKTLSDLQVVDRDTSAGGSSTPCASSGNSNLHREQRRLDDLVFQSGIRLAQSTRKALKAKGEFTDLRVGVIHLASLIDSVVRQADDHGGELILAKSRVQQLLAKELSNAAAATDVPPAVGGEAAPTCSTAAESSGPGGAAGSGAVVVAPAPAEGGVSSRGVPSRDMEDPLEGDHDVDHPDGSGLVEIIPVEKDEDVCKLLEACERRVCRVMEACGLGGSVGTKASVSDSDHNNDPQRHSFWHSGINTATVPPGSEPVTEGEATSSVLDRLFMGQTKGLKGDGAGMDIRVLPPKARDIRFERSMGDALRQQNEKLEMQETEANNLDRNAVATGVASFLEDALNSKSANKHLRRANMLVMGKQGKRAGFGLVMDDVLSGADIDIYGLADATRRRANGMEKTSTADRAILSRTDLSSAVRGRPDLKASSQATSARRKHEGRKKALIKKRVAQTARA 2120
            DAYTMSRTMAGENMIKALETRFTKVRSTSA+LDRVGAFYGRIIELCVGNPPKDNRHLRALEEQVFLSKQQTTDLSGKVQKLLFEKD IERLGIDGLRVQLARTKAVRQKVN RAEQLREQIEKNVKSERRGLKARE A HLDGSSTLPRGTTVLDRDHPSMHGVGVTALVA GK  GAARRAQTQ RLF EEELEREG EEALEQLAM+VGAEHVDDIAEKFKXXXXXXXXXXXXXXX TVTVEKLRKK+ER QKTLSDLQVVDRD SAGGSSTPCASSGNSNLHREQRRLDDLVFQSGIRLAQSTRKALKAKG+FTDLRVGV+HLASLIDSVVRQADDHGG LILAKSRVQQLLAKELSNAAAATDVP AVGG AAPT STAAESSGPGGAA     V APA AEGGVSSR VP RDMEDPLEG+HDVDHPDGSGLVE IPVEKDEDVCKLLEACERRVCRVMEA GLGGSVGTK SVSDSD N DPQR SFWHSGINTATVPPGSEPVTEGEAT SVLDRLFMGQTKGLKGDGAGMDIRV PPKARD RFERSMGDALRQQNEKLEMQETEA+NLDRNAVATGVASFLEDALNSKSANKHLRRANMLVMGKQGKRAGFGLVMDDVLSGADIDIYGLADATRRRANGMEK STAD+AILSRTDLSSAVRGRPDLKASSQATSARRK EGRKKAL+KKRVAQTARA
Sbjct: 1473 DAYTMSRTMAGENMIKALETRFTKVRSTSAELDRVGAFYGRIIELCVGNPPKDNRHLRALEEQVFLSKQQTTDLSGKVQKLLFEKDDIERLGIDGLRVQLARTKAVRQKVNVRAEQLREQIEKNVKSERRGLKAREAAMHLDGSSTLPRGTTVLDRDHPSMHGVGVTALVATGKVYGAARRAQTQSRLFGEEELEREGMEEALEQLAMVVGAEHVDDIAEKFKXXXXXXXXXXXXXXXCTVTVEKLRKKLERRQKTLSDLQVVDRDASAGGSSTPCASSGNSNLHREQRRLDDLVFQSGIRLAQSTRKALKAKGDFTDLRVGVLHLASLIDSVVRQADDHGGALILAKSRVQQLLAKELSNAAAATDVPSAVGGVAAPTPSTAAESSGPGGAAXXXXGVAAPALAEGGVSSRVVPLRDMEDPLEGEHDVDHPDGSGLVETIPVEKDEDVCKLLEACERRVCRVMEASGLGGSVGTKESVSDSDKNVDPQRPSFWHSGINTATVPPGSEPVTEGEATPSVLDRLFMGQTKGLKGDGAGMDIRVFPPKARDTRFERSMGDALRQQNEKLEMQETEASNLDRNAVATGVASFLEDALNSKSANKHLRRANMLVMGKQGKRAGFGLVMDDVLSGADIDIYGLADATRRRANGMEKASTADQAILSRTDLSSAVRGRPDLKASSQATSARRKQEGRKKALMKKRVAQTARA 2178
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18202.1 vs. uniprot
Match: A0A6H5KY30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY30_9PHAE)

HSP 1 Score: 521 bits (1342), Expect = 1.270e-178
Identity = 274/292 (93.84%), Postives = 279/292 (95.55%), Query Frame = 3 
Query: 1257 MEDPLEGDHDVDHPDGSGLVEIIPVEKDEDVCKLLEACERRVCRVMEACGLGGSVGTKASVSDSDHNNDPQRHSFWHSGINTATVPPGSEPVTEGEATSSVLDRLFMGQTKGLKGDGAGMDIRVLPPKARDIRFERSMGDALRQQNEKLEMQETEANNLDRNAVATGVASFLEDALNSKSANKHLRRANMLVMGKQGKRAGFGLVMDDVLSGADIDIYGLADATRRRANGMEKTSTADRAILSRTDLSSAVRGRPDLKASSQATSARRKHEGRKKALIKKRVAQTARA*GNS 2132
            MEDPLE +HDVD+PDGSGLVE IPVEKDEDVCKLLEAC+RRVCRVMEACGLGGSVGTK SVSDSD+N DPQRHSFWHSGINTATVPPGSEP TEGEAT SVLDRLF GQTKGLKGDGAGMDIRV PPKARD RFERSMGDALRQQNEKLEMQETEANNLDRNAVATGVASFLEDALNSKSANKHLRRANMLVMGKQGKRAGFGLVMDDVLSGADIDIYGLADATRRRANGMEK STADRAILSR DLSSAVRGRPDLKASSQATSARRK EGRKKAL+KKRVAQTARA GNS
Sbjct:    1 MEDPLEVEHDVDYPDGSGLVETIPVEKDEDVCKLLEACKRRVCRVMEACGLGGSVGTKESVSDSDNNVDPQRHSFWHSGINTATVPPGSEPATEGEATPSVLDRLFTGQTKGLKGDGAGMDIRVFPPKARDTRFERSMGDALRQQNEKLEMQETEANNLDRNAVATGVASFLEDALNSKSANKHLRRANMLVMGKQGKRAGFGLVMDDVLSGADIDIYGLADATRRRANGMEKVSTADRAILSRADLSSAVRGRPDLKASSQATSARRKQEGRKKALMKKRVAQTARALGNS 292
[Close]
BLAST of mRNA_Ecto-sp13_S_contig711.18202.1 vs. uniprot
Match: A0A836CJN5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJN5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.010e-18
Identity = 174/707 (24.61%), Postives = 251/707 (35.50%), Query Frame = 3 
Query:    3 DAYTMSRTMAGENMIKALETRFTKVRSTSADLDRVGAFYGRIIELCVGNPPKDNRHLRALEEQ---------------------------------------------------VFLSKQQTTDLSGKVQKLLFEKDAIERLGIDGLRVQLARTKAVRQKVNARAEQLREQIEKNVKSERRGLKAREVATHLDGSSTLPRGTTVLDRDHPSMHGVGVTALVAAGKADGAARRAQTQFRLFAEEELEREGREEALEQLAMLV--GAEHVDDIAEKFKXXXXXXXXXXXXXXXXTVTVEKLRKKIERSQKTLSDLQVVDRDTSAGGSSTPCASSGNSNLHREQRRLDDLVFQSGIRLAQSTRKALKAKGEFTDLRVGVIHLASLIDSVVRQADDHGGELILAKSRVQQLLAKELSNAAAATDVPPAVGGEAAPTCSTAAESSGPGGAAGSGAVVVAPAPAEGGVSSRGVPSRDMEDPLEGDHDVDHPDGSGLVEIIPVEKDEDVCKLLEACERRVCRVMEACGLGGSVGTKASVSDSDHNNDPQR-----HSFWHSGINTATVPPGSEPVTEGEATSSVLDRLFMGQTKGLKGDGAGMDIRVLPPKARDIRFERSMGDALRQQNEKLEMQETEANNLDRNAVATGVASFLEDALNSKSANKHLRRANMLVMGKQGKRAGFGLVMDDVLSGADIDIYGL---ADATRRRA 1940
            DAY ++RT AGE +I+ALE R  +V + +A++D +GAFY RII +C  NPPKD  HL ALEEQ                                                   V L+ QQ  DL  + Q LL E + IER GI  LR  LA T+ VRQ+V A+AE LR Q++   +  +  L A + A   +    L                                                R+G EE   Q + L+  GA     +AE                                 Q T S          A  +S        + +HR +R L + +  + +RL Q  R+  +    F  LR           SVV +         L  S ++ L   +L  AAA                                AV +  AP                                  E+ P           +A  +    ++ +  + G        +D              HS  H  +    +   +  V E + T++                 A    RV+P +  D+ FERS+ D +RQQ+ +LE+ E +A +L   +   G+ SFL  AL +  +  HLRR+NMLV G+QGK AGFG++MDDVL  A ID+  L   A +T R+A
Sbjct: 1375 DAYLVARTAAGERVIEALEQRVDRVAAAAAEVDGLGAFYDRIITICASNPPKDEPHLSALEEQGRVRCRQPPRLCALMPYAASDWLRHRTCRSLLDSTIIQTGRYSHRVWWLSHVKLAGQQAQDLVARTQVLLGETEDIERGGIRQLRAHLAHTRDVRQRVRAKAEDLRAQLKFEAQRRKGELLAAQAAAVQEKMERL------------------------------------------------RQGLEEQRAQCSALLQHGA-----LAE---------------------------------QDTSSSXXXXXXXXXADSASA-------AEVHRRERDLGERLQAAQMRLDQGKRRLHRTVSAFQCLR-----------SVVPE--------FLTCSPLRPLCHCQLRRAAAV-------------------------------AVTLHDAP---------------------------------YELFPA----------DAFWQSQSDIIFSTMVKGIQDKAGKHNDGXXXXXXXXXXXXXHSPAHLALLQRRLETHTAAVAESKRTAAGRSDATXXXXXXXXXXAAP---RVVPKRQTDVLFERSIEDLVRQQDGELEIAEAKAQSLGEMSRRRGMESFLAGALTAGESLGHLRRSNMLVSGRQGKYAGFGMIMDDVLRQAGIDLAALEATASSTTRQA 1892
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig711.18202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPK3_ECTSI0.000e+093.48EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KY30_9PHAE1.270e-17893.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJN5_9STRA4.010e-1824.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig711contigEcto-sp13_S_contig711:16..7999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score1173.7
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D7FPK3
Model size2275
Hectar predicted targeting categoryother localisation
Exons14
EggNOG OGs2CNRM@1,2QXQQ@2759
Cds size2109
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig711.18202.1prot_Ecto-sp13_S_contig711.18202.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig711 30..7847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463975.5020251-UTR-Ecto-sp13_S_contig711:15..291681463975.5020251-UTR-Ecto-sp13_S_contig711:15..29Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig711 16..29 +
1681463975.718306-UTR-Ecto-sp13_S_contig711:7847..79991681463975.718306-UTR-Ecto-sp13_S_contig711:7847..7999Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig711 7848..7999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463975.5132682-CDS-Ecto-sp13_S_contig711:29..2061681463975.5132682-CDS-Ecto-sp13_S_contig711:29..206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 30..206 +
1681463975.52651-CDS-Ecto-sp13_S_contig711:470..6081681463975.52651-CDS-Ecto-sp13_S_contig711:470..608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 471..608 +
1681463975.539551-CDS-Ecto-sp13_S_contig711:1542..16941681463975.539551-CDS-Ecto-sp13_S_contig711:1542..1694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 1543..1694 +
1681463975.550763-CDS-Ecto-sp13_S_contig711:2100..22061681463975.550763-CDS-Ecto-sp13_S_contig711:2100..2206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 2101..2206 +
1681463975.5601575-CDS-Ecto-sp13_S_contig711:2588..26721681463975.5601575-CDS-Ecto-sp13_S_contig711:2588..2672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 2589..2672 +
1681463975.582806-CDS-Ecto-sp13_S_contig711:3125..32391681463975.582806-CDS-Ecto-sp13_S_contig711:3125..3239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 3126..3239 +
1681463975.594915-CDS-Ecto-sp13_S_contig711:3390..35401681463975.594915-CDS-Ecto-sp13_S_contig711:3390..3540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 3391..3540 +
1681463975.609914-CDS-Ecto-sp13_S_contig711:3880..41661681463975.609914-CDS-Ecto-sp13_S_contig711:3880..4166Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 3881..4166 +
1681463975.6233716-CDS-Ecto-sp13_S_contig711:4536..46581681463975.6233716-CDS-Ecto-sp13_S_contig711:4536..4658Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 4537..4658 +
1681463975.6373782-CDS-Ecto-sp13_S_contig711:5278..54801681463975.6373782-CDS-Ecto-sp13_S_contig711:5278..5480Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 5279..5480 +
1681463975.6553965-CDS-Ecto-sp13_S_contig711:5767..59371681463975.6553965-CDS-Ecto-sp13_S_contig711:5767..5937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 5768..5937 +
1681463975.6712136-CDS-Ecto-sp13_S_contig711:6392..65211681463975.6712136-CDS-Ecto-sp13_S_contig711:6392..6521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 6393..6521 +
1681463975.6973822-CDS-Ecto-sp13_S_contig711:7187..73731681463975.6973822-CDS-Ecto-sp13_S_contig711:7187..7373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 7188..7373 +
1681463975.7090895-CDS-Ecto-sp13_S_contig711:7754..78471681463975.7090895-CDS-Ecto-sp13_S_contig711:7754..7847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig711 7755..7847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig711.18202.1

>prot_Ecto-sp13_S_contig711.18202.1 ID=prot_Ecto-sp13_S_contig711.18202.1|Name=mRNA_Ecto-sp13_S_contig711.18202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=703bp
MSRTMAGENMIKALETRFTKVRSTSADLDRVGAFYGRIIELCVGNPPKDN
RHLRALEEQVFLSKQQTTDLSGKVQKLLFEKDAIERLGIDGLRVQLARTK
AVRQKVNARAEQLREQIEKNVKSERRGLKAREVATHLDGSSTLPRGTTVL
DRDHPSMHGVGVTALVAAGKADGAARRAQTQFRLFAEEELEREGREEALE
QLAMLVGAEHVDDIAEKFKDIEARAQDLQAQGQSCTVTVEKLRKKIERSQ
KTLSDLQVVDRDTSAGGSSTPCASSGNSNLHREQRRLDDLVFQSGIRLAQ
STRKALKAKGEFTDLRVGVIHLASLIDSVVRQADDHGGELILAKSRVQQL
LAKELSNAAAATDVPPAVGGEAAPTCSTAAESSGPGGAAGSGAVVVAPAP
AEGGVSSRGVPSRDMEDPLEGDHDVDHPDGSGLVEIIPVEKDEDVCKLLE
ACERRVCRVMEACGLGGSVGTKASVSDSDHNNDPQRHSFWHSGINTATVP
PGSEPVTEGEATSSVLDRLFMGQTKGLKGDGAGMDIRVLPPKARDIRFER
SMGDALRQQNEKLEMQETEANNLDRNAVATGVASFLEDALNSKSANKHLR
RANMLVMGKQGKRAGFGLVMDDVLSGADIDIYGLADATRRRANGMEKTST
ADRAILSRTDLSSAVRGRPDLKASSQATSARRKHEGRKKALIKKRVAQTA
RA*
back to top

mRNA from alignment at Ecto-sp13_S_contig711:16..7999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig711.18202.1 ID=mRNA_Ecto-sp13_S_contig711.18202.1|Name=mRNA_Ecto-sp13_S_contig711.18202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7984bp|location=Sequence derived from alignment at Ecto-sp13_S_contig711:16..7999+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGATGCGTACACAATGTCGCGCACGATGGCGGGAGAGAACATGATCAAA
GCGCTTGAGACGCGATTCACCAAGGTGCGCTCCACGAGCGCCGACCTAGA
CAGAGTTGGGGCGTTCTACGGCCGCATCATCGAGCTGTGCGTGGGAAACC
CGCCGAAAGACAACCGTCACCTGCGTGCCCTCGAAGAACAGGTGCACACA
TCATGTCATTCCGTAGTATTGTCACAGGAGGGAACACGTGTGGAGTTTTC
CAAACGGACGACCTCGAACATCTTGAGATCGTAGTGAATATCTGACAAGA
AAGAGTGCCTGCATGCAGTGTAACGGAAACCTCTTTGTCACTCACACGCG
CCTTGATTCCATGCGTTACTCGTCGACCGCAGACACGTGCATCGGTACCG
AATCACCACGCGAGCGAGCGAAAACCAATGTCCCTCTGATTTAATCTTTG
TTCAGGTGTTTTTGTCCAAGCAACAAACGACCGACCTGTCTGGAAAGGTC
CAGAAACTTCTATTCGAGAAAGACGCTATTGAGCGCCTTGGAATCGACGG
TCTCAGGGTCCAGCTTGCCCGCACCAAGGCCGTTCGTCAAAAGGCAAGCG
CTAGCTGTTTCGTTTTTCCTCTCACCCTTGACACAACAGGCACCCTCTGG
ATGTTTTGTCCAAAGATCAACATTAAGACTGCGATCCGGAATCGAGTGAA
TCGTTCGGTAGACAGTCAGTCTTGTCCAAAGATCAACATTGTCGGCTGTT
ACGATTTCGCTGTAGTCGAATATGACATCCTCAGCCAACAATTGTCTCGA
AGCCAAAACGAGACTCCTCACGTGTTTCCCTCCTCGTTGCCTGTGTGACC
GAATCATCTACGTACGCTACGATAATTGTTTGTGATTGCTAGCATATGCC
AACTCCCCACGAACGTTGTCTCTTTCCTTCTCAAATTCAGTAGTCTAGTC
CACGTGTGTCTGGACAGCAAGTCACGATCGTGAAGGTACCTTGATGCGAC
CAGTGCAGTCTGCCGCTTTTTCTAACTTCCAATCTCGCCGCCGTGAACTG
AGTGAATGAATGGCACAAACTGAGTAGGTCATGAAATCGTTTCGAAAGCC
CTCGCTGTATTTGCACGAAGACTCGCCTCATTCCTGCTGTACTGGCTCAG
CGCGTCATCCAGGACAAGGGAATATTCACCGGTTTCGGAACGTGAAGTGC
CGGTAACAAGGAAAAGAACGAACTCTGCCCGTTGGTTGTTTCCACAACGA
GAAGCTTGTCTGTTCCAGCTCGGCCTGGATGGTATAAGAGGATGATGCCG
CCGTACTCTCGGTCAACAACGTGTACGCAACCATAACCATCCTACGTCTC
CTTCCCCGCCTCAACTTTACGTTGCGCAACCCGCGCATTCAATGTGGCCG
ATTGGTTCGAGGTCTTTGCGAGGCTAGGCAACTGCCGTCCGATAATAGTG
TTGTACCAATATGCCCACAGTGTACCTATCTGCGGCTTTCCGTGCTCAAC
GATGCATCTGTCCGTGGCCGGGGTTAGGTCAACGCCCGGGCAGAACAACT
GCGCGAGCAAATCGAGAAGAACGTGAAGTCCGAGCGGAGAGGTCTCAAGG
CGAGGGAAGTCGCAACGCATCTTGACGGCTCCTCGACACTGCCGCGCGGA
ACGACCGTACTCGACCGTGACCATCCCAGGTCAGTCAGCTTACGGCCTGG
GGCTCGCGGAATTTCTGGTGCAATTTTTGAATATTTTTGTCGCATTTTAG
GCTGTCCTACCTGTGGGTCGTTCGCAAGTACCCCCCTCCCCCCCCCCCCT
TCTCGACGCCAATTGAAGACGCAGTGTTTGGGGTCAGATTTGCAAAGATG
CTACTGATAGGCGCATATTTCTCCGTGTCATGAAGAAACGAGGCGAGAGC
GTTGCTTTCCGAGAACCCATCACGTACTGCATGCATCCATGCAGACATAC
AGATACTATCCGTTCACCGTTTGTCAAGAACGGCATTTTTCATTGATAAA
GAGCAATGTGTCCATCTCATCTGGGGGTCATTGCGTCCTCTCACCTTCTC
AATGGCCTGCATTCCTCTGTGACAACGCCGCGCAGTATGCACGGGGTTGG
CGTAACTGCGCTTGTCGCTGCCGGCAAAGCGGATGGAGCGGCTAGGCGGG
CCCAGACTCAATTCCGCCTGTTCGCGGAGGAGGAACTGGAGGTATGAATT
CGAGGTATCAAGTCACTCTGTGGACATGTCCAGTGAAGCAGAAAGATTGA
CCGATGCCGAGTGTCGAAAGCGGAGTGTGGTGAGCAGCTTGGAATCGTTG
GCCACACAACGCTGTACATGGCGTTCCAGCATGAAACACAGAACTGCCTT
TTTGTGCCTATACAACATTTTGGGGCTCTCGTATCTGCCAAAGAGATGCC
TCCTGTGGAACAAGTGTTTTCGCGAGACATCGCTGCCGTTTGCGAGACGT
CACAATATTCAGTACTGGTAGTACCGCTTGCGGCGCAGGAGCACATTGTT
TTATCATGCACAACTACCTTCTTCTCGTTTGTCCATCGTTGACAACGATT
GTTTGTGGGGGAGGGGGGATCAGAGGGAGGGTAGGGAAGAAGCTTTGGAG
CAGCTTGCGATGCTCGTGGGCGCGGAGCATGTCGACGATATCGCAGAGAA
ATTCAAGGTAATCGTATCGCGTGCCCGGCTGAGTTGATCGTACGCCAGAG
TGTCCATTGTAGGACGAGGCGGCTACTATTCTTTTATAGACATTAACGCG
GCTTGTGAAGGTTGCGTAGTGCAGATACATGCTAAAAAGCACATTGAAAG
TTGCAGCTGTATTCTTGGTAGGGAAGTTCCCAGTAGGGCGCGGAACAAAC
GAACGCGTCAGCAACGGAGAAGGATCCTGTGGTTGGGATGCGTAATATAT
GCTGTTGCGGTGGACACTGTTATACGGGTGCGAATTCCTCCTTCGGCGTC
ACTGCAACTGCTCTACAATCTCCAACAGCTTTCTCGATTCAATCTTCCGA
CACGATTGGTTGTTTGCGAAAAGCACAATCAAAATGCAATGCTTCAGACT
CCAGAGTATACAAAGGGCCACATCCTTCCCTGTCTTTGCCTCTCCTCTGA
CCCAATCAAGGATATCGAGGCTAGAGCGCAAGATCTCCAAGCCCAGGGGC
AGTCCTGCACGGTGACAGTCGAAAAACTGCGCAAAAAAATCGAGCGCAGT
CAAAAGACCCTTTCTGATTTACAGGTGAGAAGGCTTTCTGCTCTTCGTAC
CGTTCCGTATGACTCCTGTCTCGTGAATGGAGCACGCCTCCCCATGTCTA
GGATTTGACGCTGGCCGACTCATATCTAGACTACTGCTGCACCTCCACCT
AACTAACCCGACAATACCCAAATAGGTGGTAGACCGTGACACTTCGGCCG
GAGGCTCGTCCACGCCTTGCGCTTCTTCCGGGAACAGCAATCTCCATCGC
GAACAGCGTCGTCTGGATGACTTGGTATTCCAGTCGGGGATTCGTCTCGC
ACAGAGTACCAGGAAGGCCTTGAAGGTATCCCTGCCTCCAATGGGTAGCT
AGACATGAACACAGCTTGATGGTAGAGGATGGTAGAGGATACGTGCACGA
CCACATGAAATGTATTCGAAGGATCTCATTTTGTTTGAAATGGTTGATTG
TTGGCAATATTCCGGTGAGGGTCTGTATGGCAGAGACGGCAGCATCGAAG
GCTCAGTGAGAGGCGCAGACCTATCGAAAACGCTTTTTGGTCAAACATAA
TCCCGATAGCTTTCACAGTTTTATCGCCCAGCTTTCATGCATCGTCAGTA
CAACGGCAGCAGCACCCACCCCTGCCGTCCCTCCAACTCCTACAACGCAT
CTTCATCATCAACAGGCGAAGGGAGAATTCACCGACCTGAGGGTAGGCGT
TATTCACCTAGCAAGCCTGATCGACTCAGTGGTACGACAAGCGGACGATC
ACGGTGGTGAACTCATCCTTGCAAAGAGCCGGGTCCAACAACTGCTGGCG
AAGGAGCTATCGAACGCAGCGGCAGCAACGGACGTGCCACCAGCAGTGGG
GGGTGAGGCGGCACCGACATGTTCAACAGCGGCAGAAAGCAGCGGCCCAG
GCGGTGCAGCGGGGTCGGGGGCGGTGGTGGTGGCGCCAGCGCCGGCAGAA
GGTATTAGTGTCTGGCGTTCGTCCGCGGTGGTTCTAGATGCGTCTTCAGT
GTTACTAGTTTTTCTCGGAAGATTAAGCCATTGGGATCAGCCTTCTGTAG
GACGCACTGTTGGAATCCTTGGTCGAGTACGGGGTGATGGCTCCTCTACG
GCTAGGACTCAAGAAAACACTTGGGCGAAAACGAAATTTCGGGGAGGGTC
CACACCGGTGCACGACGCCTCGTACCATCGTACAATGTGCAAAGCTCATA
CTTCCGAGGATGGTTTCCACGCGAGGTTGGCAGCTTCCTCGAGCCCGACC
CGTCAGTAGCCCGTTCCTTGCTTGCCCGGCTTTCGTCCTTCCTTCCTTCG
CACGAAATCTCGTACGTGCAGGTGGTGTCTCTTCGAGGGGGGTGCCGTCG
CGTGACATGGAAGATCCTTTGGAAGGCGACCACGACGTTGATCACCCGGA
TGGTTCGGGACTGGTGGAAATCATACCTGTGGAAAAGGACGAGGTATCTT
GATTGTGCCGTACGCTGCGGTTGTCTTGAGTGGTTGTTTGTTGTTTTGCT
ATCCATCTCGAACAAGCAGCTGCTCCCATGCGGCATGAAACACGTACTTC
CACATACCTCGTACTTTATGGGAGAGCATCGTGGATGCTCACCAGAGACA
TGTCGTCCGCCCCGCCACAATTTCGACACCATCACAAATCGTAGCGACCG
CCATCCCGTCACTCATGCAGTCTGTGCTGTGACGGGGAAAATATTCATCT
ATTGTGTTGATTATTTGTAGGAATACAACCCGCCGGTTAATACGCCACAC
GAAACTTTCCTTGTCCTTGTCCCCATAGATGGCAAACACTTAATTTTTTT
CGGGCAAGTAGATGCGTACCCTTTGAAGCATCCGCGCACGAGGTGTTACG
ATGTCCTTACGCATCGGAACTACCGGCTGCATCATGCAGAACATTACGCA
TGGAGTGGAGTCGAAAATGACAGTCATTGAACACAGCAGCAGCCCGTCAT
GTACAAGCTTCGCTAGGGAGCTAGACGCTGCTGATGGTCTCGAACCCCGA
CAAAGGATCCCCCCCTTACCGAAATCGCCCCTCTTTTCGCCCGCCCGCCG
AACGGACCCCAAGGACGTTTGCAAGCTGTTGGAAGCATGCGAAAGACGTG
TCTGCCGTGTGATGGAAGCCTGTGGTCTCGGAGGAAGCGTAGGAACGAAA
GCATCGGTATCAGATTCTGACCATAATAATGACCCACAGCGACATTCCTT
CTGGCACAGCGGGATCAACACGGCGACGGTTCCGCCGGGGAGCGAGCCGG
TTACGGAGGGGGAGGGTGAGTCGAACTGGCGGTCCGGCCGAGATGGGGGC
GGCGAGGGAACGAGTTGCGAGTCCCGGCAAAACTCTTTGTGTGGCGTGTT
CAGGAGGTGATGGCGGGGAACATGATGCGGTCGGGGGATTTCTTAAGTCT
GTACGCAACTTACGACATCGGTCGATTTACGACATCGGTGTCGTAATGAA
CGTATGTGTGAATGAAAGACGATACTTGCTGGTATTGCTCGTCAGGTTCA
TTCTCGCAAGACCCTCCCTGTCTCCGCCCGTCTCGAATGCATCCATCGGC
AGCAACCTCCTCGGTTCTCGATCGACTCTTCATGGGGCAGACCAAGGGCC
TCAAGGGCGACGGCGCGGGGATGGACATTCGCGTCCTCCCGCCCAAAGCG
CGCGACATCCGATTCGAGCGGAGCATGGGTGACGCTCTCAGACAACAGAA
CGAAAAGCTGGAAATGCAAGAGGTGCATACCTACAATAACGCAATTACCA
ACGTTTTGTTTGAATTTTCCTGATTTGATTGACGCAAGCTCCATGCACGC
CCACAACAGCACCCTAGTGAAGGTCGCATCTGATGTTCGACTCGTGTCGT
TCCGAAAGAGGAGGCACGGTAAAGACATGTCCTCCTCACCTCGTGAGCTG
TGGTGAACCAACCCGCCAAAGCAAGGTGATTGTGAGTTGATGTTGCCTAA
AGGTCGAGCGAGTTGACAACGCCGTGAATAGTTGGCGTGGTTGGCGCACC
ACTCTCGAGGAGTGCACCCACTTCCGCGCCCACTGAACTTCCTGGCCGAA
GCCCCCTATTTGTTTTGTTGTGGTTCCCTCGCTATCACCGCTGCTTGTCA
CGCTGTAAGTATCGCCGACCATCGACTTGCTTTGGTTTCGTGCTTCGTTG
TTTGTTGTTCGGTATCAAACATCGCAGACGGAGGCCAACAATCTTGACCG
TAACGCGGTGGCGACGGGAGTGGCGTCGTTCCTTGAGGATGCGCTAAACA
GCAAGTCTGCCAACAAGCACTTGAGGCGGGCCAACATGCTCGTGATGGGC
AAACAGGTACAGTGTGAATTCGCTGAGTAGATTATTATGCAGGGTTTCAC
TTGATTGCGTCTGACTATCTGTAAGGAAAACGCTTAGAACTGTCAAAGGA
GAGAGAACAAGCTGATGCTTTGTTCAATGCTCATCGCGCCCGTATTCCTG
TCGGGAGTGGTCGCTAGAGGGACTACCCCCCGCCCTCAGCATTTGACCTG
ATGTCGTCGTCGCTCTTTGTGGGAGTCTCATCGATCCAACCTCCAAGCAT
GTGTTCGTCACCAGAGACTACAAACAGCCACCAGAAGCACATCGGAATGA
AAATACGATGTCGCCACGGAGATCCGAACACCGTACATGGTTCACTGTAA
GGGCAGTCTCACTCAGCAGACTTGTCCGTGAACACTGACAACACCACTAC
CGAACGGGCTGCCTCTCGATGAAATACGAGGTGTGGCCCAAACCCCGCCC
GGAGAGGGCATGCTGCACACTACCGCGGAAACCGCGTCTCCATCATTGCG
GCTCCCTCTTGTCCTTTGTCCGCGATGCACATGGTGAACTCAAGAAATAC
GTCGTTGCTGATCTTCGAAAATCTTCGCAAAACCAACTTGTAATGTCTCA
TAAACATCAAGGGGTCATAGGAATCCTCTCTTTCCTCACATGTATCGCTT
GTTCTGTCGCTTTACGTTGCAGGGTAAGCGCGCTGGGTTCGGGCTAGTGA
TGGATGATGTACTGAGCGGTGCCGACATCGACATCTACGGCCTCGCGGAT
GCAACGAGGAGACGAGCCAACGGCATGGAGAAGACTTCGACCGCGGACCG
AGCCATTCTCAGTCGCACAGATTTGTCCTCAGCCGTGAGAGGGAGGCCAG
ACTTAAAGGTAGGTGGGATGCAGCATGGGAACAAAGCCTTGATATTTCAA
CAGACTTTTCTATGCACCACCTCCTACACAGTCTACCTCGATCCCCCTCG
TGACAGCAGCTCTGTTCTTCGAAAGCAGCGTTTGGCCGAATAGAGTAACC
CTACACAGTAACCTGAAAACCCTCGGTTAGCGCGCGGCTGAAATGCGAAA
AGAATATCGGTGTCCTTCCGCCCCCGTGTCGCGAGCGAGCATTGTTTCAA
ACTTGACGAACGACCAAGTCACGCGTCACAAGTACTTTGCTGAGACAAAA
CGTGAGGAAACGCCTAATCCGAAGCGTCGAGGCGTACGCGCTTTTGCCTG
TCCTCATTTCATCGATGCGATTCCTTTGCGTGCGCGCAGGCGAGCTCGCA
GGCAACGTCTGCCCGGCGGAAGCACGAAGGCCGAAAAAAGGCTTTGATTA
AGAAACGGGTCGCCCAGACGGCGCGCGCTTAGGGTAATAGCTGATCAATA
GGAACTGTAGATACCGGCTCCCCTTCATTCCAAGGATGTGCTGGCGTACT
CACGCTGCGAGCGTCAGTGAGTTGGCGAGCATAGTTCTGCGAACAACACC
AGATTTCGTCAGGACAACAGCAATGGCGCCAGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig711:16..7999+

>mRNA_Ecto-sp13_S_contig711.18202.1 ID=mRNA_Ecto-sp13_S_contig711.18202.1|Name=mRNA_Ecto-sp13_S_contig711.18202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2109bp|location=Sequence derived from alignment at Ecto-sp13_S_contig711:16..7999+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCGCACGATGGCGGGAGAGAACATGATCAAAGCGCTTGAGACGCG
ATTCACCAAGGTGCGCTCCACGAGCGCCGACCTAGACAGAGTTGGGGCGT
TCTACGGCCGCATCATCGAGCTGTGCGTGGGAAACCCGCCGAAAGACAAC
CGTCACCTGCGTGCCCTCGAAGAACAGGTGTTTTTGTCCAAGCAACAAAC
GACCGACCTGTCTGGAAAGGTCCAGAAACTTCTATTCGAGAAAGACGCTA
TTGAGCGCCTTGGAATCGACGGTCTCAGGGTCCAGCTTGCCCGCACCAAG
GCCGTTCGTCAAAAGGTCAACGCCCGGGCAGAACAACTGCGCGAGCAAAT
CGAGAAGAACGTGAAGTCCGAGCGGAGAGGTCTCAAGGCGAGGGAAGTCG
CAACGCATCTTGACGGCTCCTCGACACTGCCGCGCGGAACGACCGTACTC
GACCGTGACCATCCCAGTATGCACGGGGTTGGCGTAACTGCGCTTGTCGC
TGCCGGCAAAGCGGATGGAGCGGCTAGGCGGGCCCAGACTCAATTCCGCC
TGTTCGCGGAGGAGGAACTGGAGAGGGAGGGTAGGGAAGAAGCTTTGGAG
CAGCTTGCGATGCTCGTGGGCGCGGAGCATGTCGACGATATCGCAGAGAA
ATTCAAGGATATCGAGGCTAGAGCGCAAGATCTCCAAGCCCAGGGGCAGT
CCTGCACGGTGACAGTCGAAAAACTGCGCAAAAAAATCGAGCGCAGTCAA
AAGACCCTTTCTGATTTACAGGTGGTAGACCGTGACACTTCGGCCGGAGG
CTCGTCCACGCCTTGCGCTTCTTCCGGGAACAGCAATCTCCATCGCGAAC
AGCGTCGTCTGGATGACTTGGTATTCCAGTCGGGGATTCGTCTCGCACAG
AGTACCAGGAAGGCCTTGAAGGCGAAGGGAGAATTCACCGACCTGAGGGT
AGGCGTTATTCACCTAGCAAGCCTGATCGACTCAGTGGTACGACAAGCGG
ACGATCACGGTGGTGAACTCATCCTTGCAAAGAGCCGGGTCCAACAACTG
CTGGCGAAGGAGCTATCGAACGCAGCGGCAGCAACGGACGTGCCACCAGC
AGTGGGGGGTGAGGCGGCACCGACATGTTCAACAGCGGCAGAAAGCAGCG
GCCCAGGCGGTGCAGCGGGGTCGGGGGCGGTGGTGGTGGCGCCAGCGCCG
GCAGAAGGTGGTGTCTCTTCGAGGGGGGTGCCGTCGCGTGACATGGAAGA
TCCTTTGGAAGGCGACCACGACGTTGATCACCCGGATGGTTCGGGACTGG
TGGAAATCATACCTGTGGAAAAGGACGAGGACGTTTGCAAGCTGTTGGAA
GCATGCGAAAGACGTGTCTGCCGTGTGATGGAAGCCTGTGGTCTCGGAGG
AAGCGTAGGAACGAAAGCATCGGTATCAGATTCTGACCATAATAATGACC
CACAGCGACATTCCTTCTGGCACAGCGGGATCAACACGGCGACGGTTCCG
CCGGGGAGCGAGCCGGTTACGGAGGGGGAGGCAACCTCCTCGGTTCTCGA
TCGACTCTTCATGGGGCAGACCAAGGGCCTCAAGGGCGACGGCGCGGGGA
TGGACATTCGCGTCCTCCCGCCCAAAGCGCGCGACATCCGATTCGAGCGG
AGCATGGGTGACGCTCTCAGACAACAGAACGAAAAGCTGGAAATGCAAGA
GACGGAGGCCAACAATCTTGACCGTAACGCGGTGGCGACGGGAGTGGCGT
CGTTCCTTGAGGATGCGCTAAACAGCAAGTCTGCCAACAAGCACTTGAGG
CGGGCCAACATGCTCGTGATGGGCAAACAGGGTAAGCGCGCTGGGTTCGG
GCTAGTGATGGATGATGTACTGAGCGGTGCCGACATCGACATCTACGGCC
TCGCGGATGCAACGAGGAGACGAGCCAACGGCATGGAGAAGACTTCGACC
GCGGACCGAGCCATTCTCAGTCGCACAGATTTGTCCTCAGCCGTGAGAGG
GAGGCCAGACTTAAAGGCGAGCTCGCAGGCAACGTCTGCCCGGCGGAAGC
ACGAAGGCCGAAAAAAGGCTTTGATTAAGAAACGGGTCGCCCAGACGGCG
CGCGCTTAG
back to top