mRNA_Ecto-sp13_S_contig71094.18201.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71094.18201.1
Unique NamemRNA_Ecto-sp13_S_contig71094.18201.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig71094.18201.1 vs. uniprot
Match: D8LMF6_ECTSI (cGMP-dependent protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF6_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 4.940e-31
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1
Query:   13 SVFPQGEVGDTFFILKEGRALVTQNGGKSGREVKRLRHMEEYSFFGERALLTREPRSANVIAETKVR 213
            ++  QGEVGDTFFILKEGRALVTQNGGK GRE KRLRHMEEYSFFGERALLTREPRSANVIAETKVR
Sbjct:  663 TIITQGEVGDTFFILKEGRALVTQNGGKPGREEKRLRHMEEYSFFGERALLTREPRSANVIAETKVR 729          
BLAST of mRNA_Ecto-sp13_S_contig71094.18201.1 vs. uniprot
Match: A0A836CDK6_9STRA (Cyclic nucleotide-binding-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.040e-17
Identity = 39/67 (58.21%), Postives = 52/67 (77.61%), Query Frame = 1
Query:   13 SVFPQGEVGDTFFILKEGRALVTQNGGKSGREVKRLRHMEEYSFFGERALLTREPRSANVIAETKVR 213
            S+  QGEVGDTF+++ EG A+VT+   +SG + + +R + EYS+FGERALL  EPRSANV A+TKVR
Sbjct:    4 SIIQQGEVGDTFYVIDEGVAVVTRLDPESGTQ-QHIRRLHEYSYFGERALLLSEPRSANVTADTKVR 69          
BLAST of mRNA_Ecto-sp13_S_contig71094.18201.1 vs. uniprot
Match: A0A2R5G8C5_9STRA (cGMP-dependent protein kinase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8C5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.800e-10
Identity = 30/65 (46.15%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   16 VFPQGEVGDTFFILKEGRALVTQNGGKSGREVKRLRHMEEYSFFGERALLTREPRSANVIAETKV 210
            +  QG++GD+F+++K+GRA VT + G    E K +  + EY +FGERALL + PR+ANV+A   V
Sbjct:  686 IVKQGDLGDSFYVIKQGRAKVTIDSGDG--EEKEVMRLSEYEYFGERALLNKAPRAANVVATEDV 748          
BLAST of mRNA_Ecto-sp13_S_contig71094.18201.1 vs. uniprot
Match: A0A7S3CFT6_9CHLO (cGMP-dependent protein kinase n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CFT6_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 3.300e-10
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   16 VFPQGEVGDTFFILKEGRALVTQNGGKSGREVKRLRHMEEYSFFGERALLTREPRSANVIA 198
            +  QGE+G+TF+++KEGRA+VT+N  KS    K L   E   FFGERALL  EPR+AN+ A
Sbjct:  130 IVKQGEIGNTFYVMKEGRAVVTRNDDKS----KILAQYERGGFFGERALLDDEPRAANIKA 186          
BLAST of mRNA_Ecto-sp13_S_contig71094.18201.1 vs. uniprot
Match: A0A5B8MQT7_9CHLO (cGMP-dependent protein kinase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MQT7_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 3.350e-10
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   16 VFPQGEVGDTFFILKEGRALVTQNGGKSGREVKRLRHMEEYSFFGERALLTREPRSANVIA 198
            +  QGE+G+TF+++KEGRA+VT+N  KS    K L   E   FFGERALL  EPR+AN+ A
Sbjct:  508 IVKQGEIGNTFYVMKEGRAVVTRNDDKS----KVLAQYERGGFFGERALLDDEPRAANIKA 564          
BLAST of mRNA_Ecto-sp13_S_contig71094.18201.1 vs. uniprot
Match: A0A7S4EWS5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EWS5_CHRCT)

HSP 1 Score: 63.2 bits (152), Expect = 6.290e-10
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 KPVYSVFPQGEVGDTFFILKEGRALVTQNGGKSGREVKRLRHMEEYSFFGERALLTREPRSANVIAETKVR 213
            KP   V  QGE GDTFFI+ +G+A+VT+    S +E +RL  +    +FGERAL+ + PR+ANVIA+ +++
Sbjct:  640 KPGDYVIRQGEQGDTFFIIMDGKAVVTKRDESSAQE-QRLMELAAGQYFGERALIEQAPRAANVIADGRLK 709          
BLAST of mRNA_Ecto-sp13_S_contig71094.18201.1 vs. uniprot
Match: A0A7S0V7R7_9CHLO (cGMP-dependent protein kinase n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0V7R7_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 1.590e-9
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   16 VFPQGEVGDTFFILKEGRALVTQNGGKSGREVKRLRHMEEYSFFGERALLTREPRSANVIAETKV 210
            V  +G+ GD F+I+KEG A+V QNG +  R+V    H+ +  FFGERALL+ EPR A V A T++
Sbjct:  213 VIVEGDKGDFFYIIKEGEAIVLQNGPQGPRKVN---HLFKADFFGERALLSDEPRMATVEASTRL 274          
BLAST of mRNA_Ecto-sp13_S_contig71094.18201.1 vs. uniprot
Match: C1MT08_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MT08_MICPC)

HSP 1 Score: 61.6 bits (148), Expect = 2.170e-9
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 KPVYSVFPQGEVGDTFFILKEGRALVTQNGGKSGR----EVKRLRHMEEYSFFGERALLTREPRSANVIA 198
            KP  +V  QGEVGD F+I+++G A+VT+    +G     +  R+ H+    FFGE+ALLTR+PR A V A
Sbjct:  185 KPGETVVTQGEVGDMFYIVRKGEAVVTKRSMSTGHLSFGDGSRVNHLFRGDFFGEKALLTRKPREATVTA 254          
BLAST of mRNA_Ecto-sp13_S_contig71094.18201.1 vs. uniprot
Match: UPI001939C8F2 (cGMP-dependent protein kinase 1-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939C8F2)

HSP 1 Score: 60.8 bits (146), Expect = 4.080e-9
Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   16 VFPQGEVGDTFFILKEGRALVT--QNGGKSGREVKRLRHMEEYSFFGERALLTREPRSANVIAETKV 210
            +  QGE GDTF+IL +G+  +T  ++G K   E   L +M+   FFGERALL  E R+ANVIA T V
Sbjct:  374 IIRQGESGDTFYILYDGKVKITKFEDGAKPEDEATFLSYMDRGKFFGERALLREEKRAANVIAYTDV 440          
BLAST of mRNA_Ecto-sp13_S_contig71094.18201.1 vs. uniprot
Match: A0A7V5PPU5_9BACT (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Caldithrix abyssi TaxID=187145 RepID=A0A7V5PPU5_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 9.900e-9
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   16 VFPQGEVGDTFFILKEGRALVTQNGGKSGREVKRLRHMEEYSFFGERALLTREPRSANVIAET 204
            +  +GEVGD  +I++EGR  V  N G    E+  L ++ +  +FGE AL+T EPRSA VIAET
Sbjct:   48 IISEGEVGDCLYIIREGRVKVVVNAGMGEDEIV-LSYLTDGDYFGEMALITGEPRSATVIAET 109          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71094.18201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF6_ECTSI4.940e-3191.04cGMP-dependent protein kinase n=2 Tax=Ectocarpus T... [more]
A0A836CDK6_9STRA7.040e-1758.21Cyclic nucleotide-binding-like protein (Fragment) ... [more]
A0A2R5G8C5_9STRA1.800e-1046.15cGMP-dependent protein kinase n=1 Tax=Hondaea ferm... [more]
A0A7S3CFT6_9CHLO3.300e-1054.10cGMP-dependent protein kinase n=1 Tax=Chloropicon ... [more]
A0A5B8MQT7_9CHLO3.350e-1054.10cGMP-dependent protein kinase n=1 Tax=Chloropicon ... [more]
A0A7S4EWS5_CHRCT6.290e-1046.48Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0V7R7_9CHLO1.590e-949.23cGMP-dependent protein kinase n=1 Tax=Polytomella ... [more]
C1MT08_MICPC2.170e-945.71Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
UPI001939C8F24.080e-949.25cGMP-dependent protein kinase 1-like n=1 Tax=Styel... [more]
A0A7V5PPU5_9BACT9.900e-947.62Cyclic nucleotide-binding domain-containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71094contigEcto-sp13_S_contig71094:471..686 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score122.9
Seed ortholog evalue6.3e-26
Seed eggNOG ortholog2880.D8LMF6
Model size216
KEGG koko:K07376,ko:K14803,ko:K19477
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04924,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04924,map04970
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
Exons1
EggNOG free text desc.cGMP-dependent protein kinase activity
EggNOG OGsCOG0631@1,COG0664@1,KOG0614@2759,KOG0698@2759
EC2.7.11.12,3.1.3.16
Cds size216
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01009,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463975.4500756-CDS-Ecto-sp13_S_contig71094:470..6861681463975.4500756-CDS-Ecto-sp13_S_contig71094:470..686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71094 471..686 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71094.18201.1prot_Ecto-sp13_S_contig71094.18201.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71094 471..686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71094.18201.1

>prot_Ecto-sp13_S_contig71094.18201.1 ID=prot_Ecto-sp13_S_contig71094.18201.1|Name=mRNA_Ecto-sp13_S_contig71094.18201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
KPVYSVFPQGEVGDTFFILKEGRALVTQNGGKSGREVKRLRHMEEYSFFG
ERALLTREPRSANVIAETKVR*
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mRNA from alignment at Ecto-sp13_S_contig71094:471..686-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71094.18201.1 ID=mRNA_Ecto-sp13_S_contig71094.18201.1|Name=mRNA_Ecto-sp13_S_contig71094.18201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71094:471..686- (Ectocarpus species13 EcNAP12_S_4_19m)
AAACCTGTCTACTCCGTTTTTCCGCAGGGGGAAGTGGGTGATACGTTTTT CATTTTGAAGGAGGGGCGCGCCTTGGTAACGCAGAACGGGGGCAAGTCCG GCCGGGAGGTGAAGCGCTTGCGGCACATGGAGGAGTACTCGTTCTTCGGG GAGAGGGCGTTGCTCACGAGGGAGCCGAGAAGCGCCAACGTTATCGCCGA GACAAAAGTGAGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71094:471..686-

>mRNA_Ecto-sp13_S_contig71094.18201.1 ID=mRNA_Ecto-sp13_S_contig71094.18201.1|Name=mRNA_Ecto-sp13_S_contig71094.18201.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71094:471..686- (Ectocarpus species13 EcNAP12_S_4_19m)
AAACCTGTCTACTCCGTTTTTCCGCAGGGGGAAGTGGGTGATACGTTTTT
CATTTTGAAGGAGGGGCGCGCCTTGGTAACGCAGAACGGGGGCAAGTCCG
GCCGGGAGGTGAAGCGCTTGCGGCACATGGAGGAGTACTCGTTCTTCGGG
GAGAGGGCGTTGCTCACGAGGGAGCCGAGAAGCGCCAACGTTATCGCCGA
GACAAAAGTGAGATAG
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