prot_Ecto-sp13_S_contig1215.1819.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1215.1819.1
Unique Nameprot_Ecto-sp13_S_contig1215.1819.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length392
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1215.1819.1 vs. uniprot
Match: A0A6H5K2Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y8_9PHAE)

HSP 1 Score: 543 bits (1400), Expect = 1.460e-191
Identity = 330/390 (84.62%), Postives = 341/390 (87.44%), Query Frame = 0 
Query:    2 MERGQSLKRRRGWLLAGCSLLAAPVQAAAWPSWGTLWPSLPPAPQSSRNQAAEPSRQNXXXXXXXXXXXXXXXEKPPSLRGGRSSPLRQLRAGEVKKHRTIPLPSRALEVAIAVQGRHGDWDACSAETCTQTRLVFCETVDSRIVVSNDLCGDELPAAERECTGADIDAVCGGRENSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKKTADTHSPVVSNSQKGKEAPSAIPRGGKSAXXXXXXXXXXXXXXXXXXXXXXXPALKGSASRDDAADKSSRQQDETPTAPSTNESAHILAAKQQSAISRMGGPGRNRAQYRFWLVMAIGAGAVGSFLAVVVFAVGQYRKERHRLRGIMALNEFPQDNYINPFAKQLSSDLSDDDRSAFKL 391
            MERGQSLKRRRGWLLAGCSLLAAPVQAAAWPSWGTLWPSLP +PQSSRNQAAEPSRQN XXXXXXXXXXXXXX    SLRGGR SP RQLRAG+VKKHRTIPLPSR LEVAIAVQGRHGDW+ACSAETCTQTRLVFCET+DSRIVVSNDLCGDELPAAERECTGADID VCGGR++SA         XXXXXXX               +KT DTHSPVVSNSQKGKE PSAIPRGG++   XXXXXXXXXXXXXXXX     PALKGSASRDDAAD+SSR QDE P A STNESAHILAAKQQSA+SRMGGPGRNRAQYRFWLVMAIGAGAVGSFLAVVVFAVGQYRKERHRLRGIM LNEFPQDNYINPFAKQLSSDLSDDDRSAFKL
Sbjct:    1 MERGQSLKRRRGWLLAGCSLLAAPVQAAAWPSWGTLWPSLPLSPQSSRNQAAEPSRQNHXXXXXXXXXXXXXXXXX-SLRGGRRSPSRQLRAGKVKKHRTIPLPSRVLEVAIAVQGRHGDWNACSAETCTQTRLVFCETLDSRIVVSNDLCGDELPAAERECTGADIDEVCGGRDSSARGGPTQQQTXXXXXXXADSTTLAENAGGSNGQKTGDTHSPVVSNSQKGKEVPSAIPRGGETTASXXXXXXXXXXXXXXXX-----PALKGSASRDDAADRSSRPQDEIPAAASTNESAHILAAKQQSAMSRMGGPGRNRAQYRFWLVMAIGAGAVGSFLAVVVFAVGQYRKERHRLRGIMPLNEFPQDNYINPFAKQLSSDLSDDDRSAFKL 384
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BLAST of mRNA_Ecto-sp13_S_contig1215.1819.1 vs. uniprot
Match: D7FU42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU42_ECTSI)

HSP 1 Score: 468 bits (1203), Expect = 1.760e-161
Identity = 319/393 (81.17%), Postives = 330/393 (83.97%), Query Frame = 0 
Query:    1 MMERGQSLKRRRGWLLAGCSLLAAPVQAAAWPSWGTLWPSLPPAPQSSRNQAAEPSRQNXXXXXXXXXXXXXXXEKP-PSLRGGRSSPLRQLRAGEVKKHRTIPLPSRALEVAIAVQGRHGDWDACSAETCTQTRLVFCETVDSRIVVSNDLCGDELPAAERECTGADIDAVCGGRENSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKKTADTHSPVVSNSQKGKEAPSAIP-RGGKSAXXXXXXXXXXXXXXXXXXXXXXXPALKGSASRDDAADKSSRQQDETPTAPSTNESAHILAAKQQSAISRMGGPGRNRAQYRFWLVMAIGAGAVGSFLAVVVFAVGQYRKERHRLRGIMALNEFPQDNYINPFAKQLSSDLSDDDRSAFKL 391
            MMERGQSLKRRRGWLLAGCSLLAAPVQAAAWPSWGTLWP+LPPAPQSSRNQAAEPSRQNXXXXXXXXXXXXXXX    PSLRGGRSSP RQLRAG+VKKHRTIPLPSR LEVAIAVQGRHGDWDACS ETCTQTRLVFCET++SRIVVSNDLCGDELP+AERECTGADIDA CGGR+NSA         XXXXXXXXXXXXXXXXXXXXX  KT DT SPVVSNSQKGKEAPSA+P       XXXXXXXXXXXXXXXXXXXXXXX                                AHILAAK+QS +SRMGGPGR+RAQYRFWLVMAIG  AVGSFLAVVVFAVGQYRKERHRLRGIMALNEFPQDNYINPFAKQLSSDLSD+DRSAFKL
Sbjct:    1 MMERGQSLKRRRGWLLAGCSLLAAPVQAAAWPSWGTLWPALPPAPQSSRNQAAEPSRQNXXXXXXXXXXXXXXXXXXXPSLRGGRSSPSRQLRAGKVKKHRTIPLPSRVLEVAIAVQGRHGDWDACSPETCTQTRLVFCETLNSRIVVSNDLCGDELPSAERECTGADIDAACGGRDNSARGGPTQQQRXXXXXXXXXXXXXXXXXXXXXXXKTGDTRSPVVSNSQKGKEAPSAVPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHILAAKEQSPMSRMGGPGRDRAQYRFWLVMAIGGVAVGSFLAVVVFAVGQYRKERHRLRGIMALNEFPQDNYINPFAKQLSSDLSDEDRSAFKL 393
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1215.1819.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2Y8_9PHAE1.460e-19184.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU42_ECTSI1.760e-16181.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 347..391
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..322
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..23
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 323..346
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.693
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 324..346

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1215contigEcto-sp13_S_contig1215:10927..14833 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1215.1819.1mRNA_Ecto-sp13_S_contig1215.1819.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1215 10746..16348 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1215.1819.1 ID=prot_Ecto-sp13_S_contig1215.1819.1|Name=mRNA_Ecto-sp13_S_contig1215.1819.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=392bp
MMERGQSLKRRRGWLLAGCSLLAAPVQAAAWPSWGTLWPSLPPAPQSSRN
QAAEPSRQNHHGTTDASAAAAAAVEKPPSLRGGRSSPLRQLRAGEVKKHR
TIPLPSRALEVAIAVQGRHGDWDACSAETCTQTRLVFCETVDSRIVVSND
LCGDELPAAERECTGADIDAVCGGRENSAGGGPTQQQGSGGKKSGAGSTT
LAENAGGSNEKKTADTHSPVVSNSQKGKEAPSAIPRGGKSAGGETTASSK
TGEEAGKEEEEVGGPALKGSASRDDAADKSSRQQDETPTAPSTNESAHIL
AAKQQSAISRMGGPGRNRAQYRFWLVMAIGAGAVGSFLAVVVFAVGQYRK
ERHRLRGIMALNEFPQDNYINPFAKQLSSDLSDDDRSAFKL*
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