prot_Ecto-sp13_S_contig7075.18156.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7075.18156.1
Unique Nameprot_Ecto-sp13_S_contig7075.18156.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length340
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7075.18156.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 4.390e-57
Identity = 131/267 (49.06%), Postives = 165/267 (61.80%), Query Frame = 0 
Query:    1 MARLLVMYGSHDPDKLVVPARLPEYGPESVMSPDNIAEIAVTMQCSFGQVYPPPGIVGRFLAWSTKQVYRYEECWQHGAFLWYNYDRGKYRVLLFES-IDEEIREGKAVRIAGLMFCVQAPPAMAPTVLTALRASLQHLVADEAYGYPGLKCLMSFEDPAEVKSTLLRDLRALLDNRDDLVKAVDRXXXXXXXXXXXXXXX----SGVANQLVQQELLAASAERKEYPYPRLVILVPDGEAYGN--NERIQRVGWDRWRKAWESLSL 260
            M RLLVMY + D D LVVPARL EYG + +  PD +  + + ++CSFGQVYPPPGIVGRFLAWS +QV  Y ECWQHGAF  Y Y   +Y V L+ES ++E  ++G     AGL   +Q PP  A  VL  LR SL+ LV+D AYGYPGL   M F    E++S+LL  L ++LD           XXXXXXXXXX          G+  QL++Q+LL AS E+  YP  RLV++ P+ E   +  +ERIQR GWDRW KA   +  
Sbjct:  713 MERLLVMYTARDADNLVVPARLQEYGDQRI--PDRLTNMVLKIECSFGQVYPPPGIVGRFLAWSAQQVADYGECWQHGAFFSYKYQYARYDVFLYESEVEEAHQDGTVDMFAGLTLGIQGPPPQAAEVLEELRKSLESLVSDSAYGYPGLVGPMYFRPAEEIESSLLVRLGSVLDXXXXXXXXXXXXXXXXXXXXXSLEETVRKLGGIVTQLLEQDLLPASDEQSAYP--RLVLVRPELETAEDMTHERIQRAGWDRWTKALSEMGF 975
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7075.18156.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKS5_ECTSI4.390e-5749.06LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7075contigEcto-sp13_S_contig7075:3819..5096 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7075.18156.1mRNA_Ecto-sp13_S_contig7075.18156.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7075 3270..6163 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7075.18156.1 ID=prot_Ecto-sp13_S_contig7075.18156.1|Name=mRNA_Ecto-sp13_S_contig7075.18156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=340bp
MARLLVMYGSHDPDKLVVPARLPEYGPESVMSPDNIAEIAVTMQCSFGQV
YPPPGIVGRFLAWSTKQVYRYEECWQHGAFLWYNYDRGKYRVLLFESIDE
EIREGKAVRIAGLMFCVQAPPAMAPTVLTALRASLQHLVADEAYGYPGLK
CLMSFEDPAEVKSTLLRDLRALLDNRDDLVKAVDRLGKTVDRLEVTASKL
SGVANQLVQQELLAASAERKEYPYPRLVILVPDGEAYGNNERIQRVGWDR
WRKAWESLSLPDVGTMWPRRAWIPYRAAEGLGQAVRSFDEGVAVDLAGGS
WHRVKCGPAPERSAGSCCEGNRCRSAGGGGHRGPQLCRQ*
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