mRNA_Ecto-sp13_S_contig12148.1816.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12148.1816.1
Unique NamemRNA_Ecto-sp13_S_contig12148.1816.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12148.1816.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 9.580e-71
Identity = 129/134 (96.27%), Postives = 133/134 (99.25%), Query Frame = 1 
Query:  154 RSSEISVDPFPNTASANASGGGGVPGPSVPGATAAVVRGDIANGLDMFLECMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAERFFREM 555
            R SEISVDPFPNTA+ANASGGGGVPGPSVPGATAAVVRGDIANG++MFLECMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAM+ACQLRPTIVTFSTLISRAGACRRVRLAERFFREM
Sbjct:   22 RPSEISVDPFPNTANANASGGGGVPGPSVPGATAAVVRGDIANGVEMFLECMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREM 155
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BLAST of mRNA_Ecto-sp13_S_contig12148.1816.1 vs. uniprot
Match: A0A7S2D4Z0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D4Z0_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 5.010e-12
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:  379 CNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGI 570
            CN  LR LGD G ++  V  +EAMVA  +RPT VT+ TLISRAGA R+ +LA R +R+ML  G+
Sbjct:    2 CNKLLRVLGDGGHLEAMVGVFEAMVASGVRPTQVTYGTLISRAGAHRQPKLASRMYRDMLRRGL 65
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BLAST of mRNA_Ecto-sp13_S_contig12148.1816.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.570e-10
Identity = 41/66 (62.12%), Postives = 46/66 (69.70%), Query Frame = 1 
Query:  340 TAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAMVACQLRPTIVTFSTLISRAGACRRVRLAE 537
            TA+  P Q  V  CN FLR LGD+GR+ D V AYEAMV   L PTIVTFSTLISRAGA  +  LA+
Sbjct:  114 TASKRPPQ--VRDCNRFLRVLGDSGRLQDAVQAYEAMVKAGLMPTIVTFSTLISRAGAAGKTALAQ 177
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BLAST of mRNA_Ecto-sp13_S_contig12148.1816.1 vs. uniprot
Match: A0A482S411_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S411_9ARCH)

HSP 1 Score: 57.0 bits (136), Expect = 1.080e-5
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:  379 CNVFLRALGDAGRIDDCVAAYEAMV--ACQLRPTIVTFSTLISRAGACRRVRLAERFFREM 555
            CNV LR LGD G +  C   ++ M+  + +L P++VT+STLISRAG  +RV LA  FF  M
Sbjct:  138 CNVLLRVLGDQGALSFCTQIFQLMLTHSPRLSPSLVTYSTLISRAGTWQRVDLARYFFDHM 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12148.1816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSJ6_ECTSI9.580e-7196.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2D4Z0_9EUKA5.010e-1254.69Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A836CEM1_9STRA4.570e-1062.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482S411_9ARCH1.080e-549.18Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12148contigEcto-sp13_S_contig12148:924..4840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score252.7
Seed ortholog evalue2.5e-64
Seed eggNOG ortholog2880.D8LSJ6
Model size1044
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Exons5
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
Cds size1044
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462645.6147947-CDS-Ecto-sp13_S_contig12148:923..12161681462645.6147947-CDS-Ecto-sp13_S_contig12148:923..1216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12148 924..1216 +
1681462645.6308806-CDS-Ecto-sp13_S_contig12148:2077..22871681462645.6308806-CDS-Ecto-sp13_S_contig12148:2077..2287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12148 2078..2287 +
1681462645.6420841-CDS-Ecto-sp13_S_contig12148:3071..32131681462645.6420841-CDS-Ecto-sp13_S_contig12148:3071..3213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12148 3072..3213 +
1681462645.6499636-CDS-Ecto-sp13_S_contig12148:3840..40321681462645.6499636-CDS-Ecto-sp13_S_contig12148:3840..4032Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12148 3841..4032 +
1681462645.6582515-CDS-Ecto-sp13_S_contig12148:4633..48401681462645.6582515-CDS-Ecto-sp13_S_contig12148:4633..4840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12148 4634..4840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12148.1816.1prot_Ecto-sp13_S_contig12148.1816.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12148 924..4840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12148.1816.1

>prot_Ecto-sp13_S_contig12148.1816.1 ID=prot_Ecto-sp13_S_contig12148.1816.1|Name=mRNA_Ecto-sp13_S_contig12148.1816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=348bp
QLSRQRQRQRRRRRPFSPALSQERSNGPPPHREAAAINTATTTMALSSSN
TRSSEISVDPFPNTASANASGGGGVPGPSVPGATAAVVRGDIANGLDMFL
ECMSRRRLKLAAATAAASPKQGGVPACNVFLRALGDAGRIDDCVAAYEAM
VACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSL
INAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQ
VFSRLSHAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRV
TYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGK
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mRNA from alignment at Ecto-sp13_S_contig12148:924..4840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12148.1816.1 ID=mRNA_Ecto-sp13_S_contig12148.1816.1|Name=mRNA_Ecto-sp13_S_contig12148.1816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3917bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12148:924..4840+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTATCCCGACAGCGTCAGCGGCAACGGCGGCGGCGACGGCCGTTTTC
TCCGGCACTATCCCAAGAACGGTCCAACGGACCGCCGCCTCACAGAGAAG
CGGCCGCTATCAACACCGCGACCACCACCATGGCCTTGTCCAGCAGCAAC
ACCAGGTCGTCGGAGATCTCGGTGGACCCCTTTCCCAACACGGCTAGCGC
CAACGCCTCCGGCGGTGGTGGTGTTCCAGGGCCCAGCGTGCCGGGCGCGA
CGGCCGCTGTGGTCCGGGGGGACATCGCGAACGGGTTGGACATGTGAGCC
GCCGTCATTCGTTCATGTGTATCCGCTGCGGTCGTGTTGTGATGCACGGA
CACGGTAACCATGTTCCACGCCCCCCCGTGGACGTTTGTTTATGATCAGT
CCACGATGAAGAGGATGCCAAAATCGAATGTTGCGTTTTTGGAAAGCGAG
GCGGCTCTAACGCTGCCATTTTCGGCACTGGCACTGGTAGTTTTTTTTTT
TATGCGGAGTAGTCGAGCTCTTGATCCCGTCGAGCGGGTGTGTGGTATCT
TATGCGGCCTACGGTTCGTGAAGTGGTCACGGTGTACAGCACGCACGAAG
CGGTGTACTAGTAGTTTGTCTCTCCGAAAACCAAGACTTCGGCGGTCATT
CTTCGTAGGGGGACGCAACTCAGAGTCCTCCGGGATGGTTGGAAACTCCC
AAACCCTTCCTTTTGGCTGCTGGGGCCTAAGATTTTGCTCTAGAAAACAT
GGGGCAACGACATTCTTCGACAGCGCTTCGATGATGGAATCGATTCTTAT
CGTTGTATATTTTTGAACTAGTGTTATGCCTCGTCTCAAAACTTAGGTGC
GCCATTCAATGCCTCCAACAATGTACGCCAACCGAAAAGTTCACGCAGAA
ATTCGGTCAGAACGTGGCATGCCCCGGCTGCTTCAGCCCATTGTTGAGGA
AACCACGAGCATGCGTGACAGCATATAAGTAGAAGATCCTCCCTCACCGC
CTCCTTGGGGTTCAGTCGAAATGTGGCATGCTCCGTCCCATCTTCCCCCC
AGCTTCACCGGAATGCGAGTGCCGCTGGTTCTGTGAACCACGAGCACACA
TCACAGCAGTGTAGTTGGAAACCCTCCCTCGCTGCCCCCCCTTGGTTGCG
ACAGGTTCTTGGAATGCATGTCGCGGCGGCGCCTTAAGCTAGCGGCGGCG
ACAGCGGCAGCCTCGCCGAAGCAGGGAGGGGTGCCGGCCTGCAACGTGTT
CCTTCGCGCGCTGGGGGACGCCGGGAGGATCGACGACTGCGTCGCGGCCT
ACGAGGCCATGGTGGCGTGCCAGCTCCGCCCCACGATCGTCACGTTCTCC
ACCCTCATCTCCCGGTGAGCTTTGTGTGCTCTACGACGTTGCTAGGCATC
GGTTTGGGGTTTTCTGGAACAAGTTATCATGCCCAGGAAAATACGATATG
GGGCTTGGCGCAGGTTTGTGGGCTCTGTAGTTGGAGGTTTCAATCGGGAG
CTTGGTTCTAGTGTGCGTGCGCAGCATATCTCATTGGGCGCTCTGGTACG
CGCTCGCCCTTACGGCCCTCTCGAAGTCTAGCGTTTTCCGGTCGAACGAC
ATGGGTGCTGCGGTAGTTGGCGCTGTGGTGATCTTGAGTCCGAACCCGTA
CTCGAGTCAGTGGGCAACTCCTTCGAGTTTTATCTACTCAAACCCCGAGA
CACAATTTTGTATCGGTGACGTACCACGAACAACGTCCTGGTATCCTCAG
AGCTCCCAAGCTTGTTGTTCATTGTAATTTGTTTTACCCCTTATCTCATC
ACCACCGTCGCCCGCCTGTTTTCGCACGAGACATCCCCCCCCCCCCCTCG
AGATCGACAACCCCCGTACGACTCGAAGTATAGCAAGACAAGAAACTTGG
CAATCTGTCACACGTTCACGAGTGAGGTTCCCCGCGCCCCTACCCCACCG
TTCTCTGTGTAGTATCCATCGTTCGCAGGGTTTTATCGTTTTTTGTAATC
GTGTTCGATGAAGCATACAATCGGGGAGGTTGGAGTACGGCTCGGGTTGG
GGAGGAGGGTTAGCGTCCACCCTCCCTGTTCTGTTTCCTCACAAACTTAT
TGATTAATCGCGCGAAGGCGGTCCTCTCTGTGCCAACTCGATATACAGGG
CTGGGGCGTGTCGGAGGGTCCGTTTGGCGGAGAGATTTTTCAGGGAGATG
CTCGAGGCGGGAATTACCCCGGACGTTCAGGCCATCAATTCCCTCATCAA
CGCTTTTGCGAAGGCGGGCAGTCCGGATCAGGCACTTAAGGTAGATAGCG
CGCCGGGCGGGGGGGGGTTCCTACCGTGCGAACTTGCCGGCCGGCCGGCT
ATTCCGTCTTGCATCGTGCATTTTCTATATTTTCGATTTTGTTTTTTCCG
GGTGATCTGCTGTCCAATGCGCTGGTGCTTGTGCTTCTCGGGTCGGGTAC
CTGCGCGCATGTCTGCCCTCTTTGTGTTTTTTGGTTTTAAACCGCCGCTG
CCGTTGCTGCTGTTGAAGCCCGGCTTTTCAGTCTATGTACGCGATCTACT
CACCGTCCGTACCTACGCACGAGGCTGACGGAAGAGTAGGAAGGTTGCCC
TCTGATTAGGCACCGGCCTCGGCGGTAACTCATCAGGGCATGCACATCGA
CGGCCTGAAGCAACAAGGACCATATTTGCAATATGAAAATGGATGGCAAA
ACATCGATACAGGATGCCATCCTTTATTCCCAATTGACCGGTTTTCGCAC
CGTTATGTCCTCGTCACCCCCTGCATTGAGGACAGGACTTCGATCAGATT
CCTCGCTGCTGTCCACCACGGTCTCACCCACCCCTCCCTTTATCGTCCAA
CCCATCTTGACATTTTCTCGTCCTTTTTCTTACCCCAAAAATTCGTTGCG
CTCTTGGGACGTGGCAGGTTTTCGACCAGATGTCTCGCTACGGCGTGACC
CCTTCCGTGATCACGTTCAACACCCTAATCGACGCGTGCGGTAGAGCTGG
CGACATAGACCGGGCGCGGCAGGTGTTCTCCCGCCTCTCCCATGCGGGTC
TCAGCCCCAACGACAGGACGTTCTCGGCCTTGATCCACTCTCACGCCGTA
CAGGGACAGGTAGGGGGGGGGGAGTGTCCTCATGTAAACGCATGCCGTTG
TCGTTAGACCATTGACCTCGCGTCCCTACAATACCGAAACAGAGCAATGT
GCCGGGTTTTCGCCGGGGGGAGGGGTTGAGCGTGCGGTGATGACACAATC
TCGAGATGGTTGTATGGCTGCTTGAAAATCGATCGCCGATTGGTGTGTAC
CTCTAACTTGTCAAGGAGAGGCTCGCGTCATATGCGGCGCAGCCGCACAT
AATTTTTTCTGTTTGCGCTGCACTGATTTAAAGTGAATGAGAAAGTAAAT
AAAACATGAGAGCGGGGGTGGGTTCCGCTTCCCGTGTACCCTAACACGAC
AAGGATCGGGTTGACCCGTTGGCTTTACCCGAGATCGCGGTTCTTGCGCG
CTTTGCGCACATTTTTTGCGCGATTTAGAACCAAAAGCAAACCATTCGAC
TAGTCAGCGCGGATTTGTCTCGGTTTTCATTTCGGTTTCTGTAACAGTTG
CTTCTGGGTTTTGCAGTCGGCGAAAACGGGCACGAAAAAGAATCAAACCC
GATTCTCTCCGCCACCCTCCCCCTGTTTTCTTTTTCCGGCGTCTGAATGG
GGTTTCCAAGGTCGACGAGGCGTTCTCTTGGCTGCAGGAGATGCGGGCGA
GGGGGCTGGAACCCAACCGCGTCACGTACTCGGCGCTTATCAACGCGTGC
GGCCGGGCGGGGCAGCTCGCGAGGGCATTCCAGACCCTGGACGAGATGTT
TGGGACGGGGATTGAGCCCAACGTGGTCACGTGGACCACCCTCATCGACG
CGTGCGGGAAGGGAAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12148:924..4840+

>mRNA_Ecto-sp13_S_contig12148.1816.1 ID=mRNA_Ecto-sp13_S_contig12148.1816.1|Name=mRNA_Ecto-sp13_S_contig12148.1816.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1044bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12148:924..4840+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTATCCCGACAGCGTCAGCGGCAACGGCGGCGGCGACGGCCGTTTTC
TCCGGCACTATCCCAAGAACGGTCCAACGGACCGCCGCCTCACAGAGAAG
CGGCCGCTATCAACACCGCGACCACCACCATGGCCTTGTCCAGCAGCAAC
ACCAGGTCGTCGGAGATCTCGGTGGACCCCTTTCCCAACACGGCTAGCGC
CAACGCCTCCGGCGGTGGTGGTGTTCCAGGGCCCAGCGTGCCGGGCGCGA
CGGCCGCTGTGGTCCGGGGGGACATCGCGAACGGGTTGGACATGTTCTTG
GAATGCATGTCGCGGCGGCGCCTTAAGCTAGCGGCGGCGACAGCGGCAGC
CTCGCCGAAGCAGGGAGGGGTGCCGGCCTGCAACGTGTTCCTTCGCGCGC
TGGGGGACGCCGGGAGGATCGACGACTGCGTCGCGGCCTACGAGGCCATG
GTGGCGTGCCAGCTCCGCCCCACGATCGTCACGTTCTCCACCCTCATCTC
CCGGGCTGGGGCGTGTCGGAGGGTCCGTTTGGCGGAGAGATTTTTCAGGG
AGATGCTCGAGGCGGGAATTACCCCGGACGTTCAGGCCATCAATTCCCTC
ATCAACGCTTTTGCGAAGGCGGGCAGTCCGGATCAGGCACTTAAGGTTTT
CGACCAGATGTCTCGCTACGGCGTGACCCCTTCCGTGATCACGTTCAACA
CCCTAATCGACGCGTGCGGTAGAGCTGGCGACATAGACCGGGCGCGGCAG
GTGTTCTCCCGCCTCTCCCATGCGGGTCTCAGCCCCAACGACAGGACGTT
CTCGGCCTTGATCCACTCTCACGCCGTACAGGGACAGGTCGACGAGGCGT
TCTCTTGGCTGCAGGAGATGCGGGCGAGGGGGCTGGAACCCAACCGCGTC
ACGTACTCGGCGCTTATCAACGCGTGCGGCCGGGCGGGGCAGCTCGCGAG
GGCATTCCAGACCCTGGACGAGATGTTTGGGACGGGGATTGAGCCCAACG
TGGTCACGTGGACCACCCTCATCGACGCGTGCGGGAAGGGAAAG
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