mRNA_Ecto-sp13_S_contig10153.182.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10153.182.1
Unique NamemRNA_Ecto-sp13_S_contig10153.182.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10153.182.1 vs. uniprot
Match: A0A6H5JP76_9PHAE (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP76_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 7.300e-70
Identity = 124/131 (94.66%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:    1 VHDQSSSRGGVDIMDRHQLHRYDAESRRTLRKGVSHFLSPQLQVLIKEKPRIALAEKADFAELLSEERSGRRIEELSMDLMRRSFMIRKRVATGSAAGGLAEDXXXXXXVPPDMPAALQTTNKLSPAFAKK 393
            +HDQSSSRGGVDIMDRHQLHRYDAESRRTLRKG+SHFLSPQLQVLIKEKPRIALAEKA FAELLSEERSGRRIEELSMDLMRRSFMIRKRVA GSAAGGLA  XXXXXXVPPDMPAALQTTNKLSPAFA+K
Sbjct:    1 MHDQSSSRGGVDIMDRHQLHRYDAESRRTLRKGISHFLSPQLQVLIKEKPRIALAEKAYFAELLSEERSGRRIEELSMDLMRRSFMIRKRVAPGSAAGGLAXXXXXXXXVPPDMPAALQTTNKLSPAFARK 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10153.182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP76_9PHAE7.300e-7094.66Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10153contigEcto-sp13_S_contig10153:5534..5926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score221.5
Seed ortholog evalue2.4e-55
Seed eggNOG ortholog2880.D7FUU3
Model size393
KEGG koko:K10523
KEGG Pathwayko04340,ko04341,map04340,map04341
KEGG ModuleM00384
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000302,GO:0001101,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0006355,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007275,GO:0007623,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009266,GO:0009409,GO:0009553,GO:0009555,GO:0009611,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009723,GO:0009725,GO:0009733,GO:0009734,GO:0009737,GO:0009738,GO:0009739,GO:0009743,GO:0009751,GO:0009753,GO:0009755,GO:0009756,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010035,GO:0010167,GO:0010182,GO:0010200,GO:0010243,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0014070,GO:0016020,GO:0019005,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0023052,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031461,GO:0031625,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033993,GO:0042221,GO:0042493,GO:0042542,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046677,GO:0048229,GO:0048511,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051246,GO:0051252,GO:0051338,GO:0051347,GO:0051603,GO:0051716,GO:0051972,GO:0051973,GO:0060255,GO:0065007,GO:0065009,GO:0070887,GO:0071215,GO:0071229,GO:0071310,GO:0071322,GO:0071365,GO:0071396,GO:0071495,GO:0071704,GO:0080090,GO:0097305,GO:0097306,GO:0098588,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901701,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2000278,GO:2000573,GO:2001141
Exons1
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1778@2759
Cds size393
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462511.3610592-CDS-Ecto-sp13_S_contig10153:5533..59261681462511.3610592-CDS-Ecto-sp13_S_contig10153:5533..5926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10153 5534..5926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10153.182.1prot_Ecto-sp13_S_contig10153.182.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10153 5534..5926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10153.182.1

>prot_Ecto-sp13_S_contig10153.182.1 ID=prot_Ecto-sp13_S_contig10153.182.1|Name=mRNA_Ecto-sp13_S_contig10153.182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
VHDQSSSRGGVDIMDRHQLHRYDAESRRTLRKGVSHFLSPQLQVLIKEKP
RIALAEKADFAELLSEERSGRRIEELSMDLMRRSFMIRKRVATGSAAGGL
AEDGGGGPPVPPDMPAALQTTNKLSPAFAKK
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mRNA from alignment at Ecto-sp13_S_contig10153:5534..5926+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10153.182.1 ID=mRNA_Ecto-sp13_S_contig10153.182.1|Name=mRNA_Ecto-sp13_S_contig10153.182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10153:5534..5926+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCACGACCAATCAAGTTCGCGCGGTGGCGTGGACATCATGGATCGCCA
CCAGCTACACCGCTACGACGCAGAGAGTCGGCGCACACTACGGAAGGGCG
TCTCGCACTTCCTGTCCCCTCAGCTGCAGGTTCTCATCAAGGAGAAGCCG
CGCATTGCTCTGGCGGAGAAGGCGGACTTCGCGGAGCTGCTGAGCGAGGA
ACGGTCCGGGAGGCGCATCGAGGAGCTGTCGATGGACTTGATGCGACGAT
CATTCATGATTCGGAAGAGGGTTGCTACAGGCTCCGCGGCGGGCGGCCTG
GCGGAAGACGGGGGGGGAGGGCCGCCGGTGCCGCCGGACATGCCGGCGGC
GCTTCAAACCACGAACAAGCTTTCCCCTGCGTTTGCAAAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10153:5534..5926+

>mRNA_Ecto-sp13_S_contig10153.182.1 ID=mRNA_Ecto-sp13_S_contig10153.182.1|Name=mRNA_Ecto-sp13_S_contig10153.182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10153:5534..5926+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCACGACCAATCAAGTTCGCGCGGTGGCGTGGACATCATGGATCGCCA
CCAGCTACACCGCTACGACGCAGAGAGTCGGCGCACACTACGGAAGGGCG
TCTCGCACTTCCTGTCCCCTCAGCTGCAGGTTCTCATCAAGGAGAAGCCG
CGCATTGCTCTGGCGGAGAAGGCGGACTTCGCGGAGCTGCTGAGCGAGGA
ACGGTCCGGGAGGCGCATCGAGGAGCTGTCGATGGACTTGATGCGACGAT
CATTCATGATTCGGAAGAGGGTTGCTACAGGCTCCGCGGCGGGCGGCCTG
GCGGAAGACGGGGGGGGAGGGCCGCCGGTGCCGCCGGACATGCCGGCGGC
GCTTCAAACCACGAACAAGCTTTCCCCTGCGTTTGCAAAGAAG
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