prot_Ecto-sp13_S_contig10153.181.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10153.181.1
Unique Nameprot_Ecto-sp13_S_contig10153.181.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length212
Homology
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 1.620e-88
Identity = 163/178 (91.57%), Postives = 164/178 (92.13%), Query Frame = 0
Query:    1 MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGVKQELGGGGNNN-TGHYXXXXXXXXXXXXXXRDVKPKVANNPYGSSNKQANNPYAGG 177
            MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGP PKIGDPINFSEDSSA VK ELGGG NNN TGHY XX   XXXXXXXXRDVKPKVANNPYG+SNKQ     AGG
Sbjct:    1 MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPAPKIGDPINFSEDSSARVKPELGGGSNNNNTGHYGXXSKPXXXXXXXXRDVKPKVANNPYGASNKQXXXXXAGG 178          
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: D7FUU2_ECTSI (Rep-A_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU2_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 2.670e-76
Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 0
Query:   35 MTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGVKQELGGGG-NNNTGHYXXXXXXXXXXXXXXRDVKPKVANNPYGSSNKQANNPYAGG 177
            MTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGVKQELGGG  NNNTG+Y XXXXXXXXXXXXXRDVKPKVANNPYG++NKQANNPYAGG
Sbjct:    1 MTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGVKQELGGGSSNNNTGNYGXXXXXXXXXXXXXRDVKPKVANNPYGAANKQANNPYAGG 144          
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A7S3XQ94_HETAK (Replication protein A subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ94_HETAK)

HSP 1 Score: 122 bits (306), Expect = 1.280e-28
Identity = 62/115 (53.91%), Postives = 88/115 (76.52%), Query Frame = 0
Query:    1 MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFS 115
            MANL S G+I QI+ G     G  PT+QV+++KK+  AG DR+RL++SDGQ++AQ MLATQ N ++SS +L+ELCI+ L++Y+VN VQ +R++I L ++V SGP PK+GDP N S
Sbjct:    1 MANLTS-GSIQQIVNGEV--TGLTPTLQVINVKKVQGAGADRFRLIISDGQYYAQCMLATQLNHLVSSNELQELCIVKLTNYVVNNVQGRRIVIGLAVEVVSGPVPKVGDPQNSS 112          
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: I2FRR5_USTH4 (Replication protein A subunit n=1 Tax=Ustilago hordei (strain Uh4875-4) TaxID=1128400 RepID=I2FRR5_USTH4)

HSP 1 Score: 102 bits (254), Expect = 1.300e-21
Identity = 64/147 (43.54%), Postives = 95/147 (64.63%), Query Frame = 0
Query:    3 NLISRGAINQIMGGATGAAGY-NPTVQVVSLKKMTNAGT------DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTP-KIGDPINFSE--DSSAGVKQELGGG---GNNNTGH 136
            N +S+GAI Q++  A  A    NP  Q++S+KK+  + T      DR+R++LSDG H+AQSMLA+Q+  M+ SG+L++ C++ +S Y  N VQN+R++ILL L+V   PT  ++G P N  +   S  GVKQE G G   GN+N G+
Sbjct:    4 NDLSQGAIAQMIQTADPANSVQNPICQILSIKKIQASATSASNVGDRYRIILSDGVHYAQSMLASQKRSMVESGELEKHCLVRISQYASNSVQNRRILILLDLEVAHKPTADRLGSPTNVDDAIKSEGGVKQEGGAGNALGNSNLGN 150          
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A317XXN4_9BASI (Replication protein A subunit n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XXN4_9BASI)

HSP 1 Score: 101 bits (251), Expect = 3.270e-21
Identity = 60/136 (44.12%), Postives = 85/136 (62.50%), Query Frame = 0
Query:    5 ISRGAINQ-IMGGATGAAGYNPTVQVVSLKKMTNAGT------DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTP-KIGDPINFSEDSSAG-----VKQELG 127
            ++ GAI Q I    T     NP  Q++S+KK+    T      DR+R++LSDG H+AQ+MLA+Q+  M+ SG+L++ CI+ +  Y  N VQN+R++ILL L V SGP P ++G+PIN  E   AG     VKQE G
Sbjct:    6 LTHGAIAQMIQSSDTSNLVQNPVCQILSIKKIQATSTTAANVGDRYRIILSDGVHYAQAMLASQKRTMVESGELEKNCIVKVLQYAANSVQNRRILILLDLQVLSGPAPDRLGNPINVDEAQKAGGEAGPVKQESG 141          
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A835Z8X4_9STRA (Replication protein A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.520e-21
Identity = 54/112 (48.21%), Postives = 80/112 (71.43%), Query Frame = 0
Query:    5 ISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGT--DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINF 114
            +++GAI +I+  A+G  G+ P VQV+S+KKMT A    +R+R+V+SDGQH  QSML T QN++I+SG + E C+I L ++I+N +  K ++I+L+  V SG  PKIGDP  F
Sbjct:    6 VTQGAIQRIIT-ASGQDGFLPIVQVLSIKKMTAAAGQGERYRVVVSDGQHHQQSMLTTSQNDLITSGQMVEGCLICLDEFILNQIGAKSIVIILRASVLSGAMPKIGDPTAF 116          
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: R9P362_PSEHS (Replication protein A subunit n=1 Tax=Pseudozyma hubeiensis (strain SY62) TaxID=1305764 RepID=R9P362_PSEHS)

HSP 1 Score: 96.7 bits (239), Expect = 1.410e-19
Identity = 56/136 (41.18%), Postives = 90/136 (66.18%), Query Frame = 0
Query:    3 NLISRGAINQIMGGATGAAG--YNPTVQVVSLKKMTNAGT------DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTP-KIGDPINFSE--DSSAGVKQELG 127
            N +S+G+I Q++  A  A+    NP  Q++S+KK+  + T      DR+R++LSDG H+AQ+MLA+Q+  M+ SG+L++ C++ ++ +  N VQN+R++ILL LDV   PT  ++G+P N  E   +  GVKQE G
Sbjct:  122 NDLSQGSIAQMIQTADPASSSVQNPVCQILSIKKIQASATSASNVGDRYRIILSDGVHYAQAMLASQKRSMVESGELEKHCLVRITQFASNSVQNRRILILLDLDVVHKPTADRLGNPTNVDEAVKTEGGVKQEGG 257          
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A1A6A3J9_9TREE (Replication protein A subunit n=2 Tax=Kwoniella TaxID=490731 RepID=A0A1A6A3J9_9TREE)

HSP 1 Score: 93.2 bits (230), Expect = 2.060e-18
Identity = 52/143 (36.36%), Postives = 82/143 (57.34%), Query Frame = 0
Query:    1 MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGT---DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGV------------KQELGG 128
            MA+ ++ G    +   A    G  P +QV+S+KK+   G    DR+RL+LSDG+HF Q+M+ATQ N ++ S +L +  +I L+ Y+ N VQ ++L+I+L L++      KIG+P N  +  +AG             KQE+GG
Sbjct:    1 MASPLTAGFCELVFNSADAPEGVTPILQVLSVKKINAPGATGQDRYRLILSDGKHFIQAMIATQLNNLVDSKELDKNVVIKLTGYVTNAVQGRKLVIILNLEIVPWNGEKIGNPTNLEQQQNAGAGASTSAPAQAVPKQEVGG 143          
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A0D1CUI6_USTMA (Replication protein A subunit n=10 Tax=Ustilaginaceae TaxID=5268 RepID=A0A0D1CUI6_USTMA)

HSP 1 Score: 92.4 bits (228), Expect = 3.840e-18
Identity = 56/136 (41.18%), Postives = 89/136 (65.44%), Query Frame = 0
Query:    3 NLISRGAINQIMGGATGAAG--YNPTVQVVSLKKMTNAGT------DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTP-KIGDPINFSEDSSA--GVKQELG 127
            N +S+GAI Q++  +  A+    NP  Q++S+KK+  + T      DR+R++LSDG ++AQ+MLA+Q+  M+ SG+L++ C++ ++ +  N VQN+R++ILL LDV   PT  ++G P N  E   A  GVKQE G
Sbjct:    4 NDLSQGAIAQMIQTSDPASSSVQNPVCQILSIKKIQASATSAANVGDRYRIILSDGINYAQAMLASQKRSMVESGELEKNCLVRVTQFASNSVQNRRILILLDLDVVHKPTEDRLGHPTNVEEAVKAEGGVKQEGG 139          
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A7S2JN56_9EUKA (Replication protein A subunit n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JN56_9EUKA)

HSP 1 Score: 92.4 bits (228), Expect = 3.940e-18
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = 0
Query:   19 GAAGYNPTVQVVSLKKMTNAGT---DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSED--SSAGVKQELGGGGNNNTGHY 137
            G A   P +QV+ +K++ N G    DR+RL LSDG  F QSMLATQ N+++++G+L++ C++ L+++I NVVQN+++II L + V SGP P IG+P        +S GV       G NN G Y
Sbjct:   20 GHAEKQPLLQVLDVKRIGNPGAPQGDRYRLQLSDGVFFTQSMLATQLNDLVANGELQQHCVVQLTEHICNVVQNRKIIIALGMIVKSGPVPVIGNPRQLESPPITSDGVT------GGNNPGQY 137          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK0_9PHAE1.620e-8891.57Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
D7FUU2_ECTSI2.670e-7695.83Rep-A_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3XQ94_HETAK1.280e-2853.91Replication protein A subunit n=1 Tax=Heterosigma ... [more]
I2FRR5_USTH41.300e-2143.54Replication protein A subunit n=1 Tax=Ustilago hor... [more]
A0A317XXN4_9BASI3.270e-2144.12Replication protein A subunit n=1 Tax=Testicularia... [more]
A0A835Z8X4_9STRA4.520e-2148.21Replication protein A subunit n=1 Tax=Tribonema mi... [more]
R9P362_PSEHS1.410e-1941.18Replication protein A subunit n=1 Tax=Pseudozyma h... [more]
A0A1A6A3J9_9TREE2.060e-1836.36Replication protein A subunit n=2 Tax=Kwoniella Ta... [more]
A0A0D1CUI6_USTMA3.840e-1841.18Replication protein A subunit n=10 Tax=Ustilaginac... [more]
A0A7S2JN56_9EUKA3.940e-1843.55Replication protein A subunit n=1 Tax=Cyanoptyche ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 4..116
e-value: 9.3E-33
score: 114.5
NoneNo IPR availablePANTHERPTHR23273:SF4REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNITcoord: 25..182
NoneNo IPR availablePANTHERPTHR23273REPLICATION FACTOR A 1, RFA1coord: 25..182
IPR007199Replication factor-A protein 1, N-terminalPFAMPF04057Rep-A_Ncoord: 5..100
e-value: 9.9E-25
score: 86.5
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10153contigEcto-sp13_S_contig10153:984..5227 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10153.181.1mRNA_Ecto-sp13_S_contig10153.181.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10153 3..5227 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10153.181.1 ID=prot_Ecto-sp13_S_contig10153.181.1|Name=mRNA_Ecto-sp13_S_contig10153.181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp
MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGTDRWRLVLSDG
QHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDV
TSGPTPKIGDPINFSEDSSAGVKQELGGGGNNNTGHYGGGSKPNTGGYGA
GRDVKPKVANNPYGSSNKQANNPYAGGGNNNNYGGGGGNYGGGGGGGGGG
GPGRRSQQPLR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007199Rep_factor-A_N
IPR012340NA-bd_OB-fold