mRNA_Ecto-sp13_S_contig10153.181.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE) HSP 1 Score: 283 bits (723), Expect = 1.410e-87 Identity = 163/178 (91.57%), Postives = 164/178 (92.13%), Query Frame = 1 Query: 1 MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGVKQELGGGGNNN-TGHYXXXXXXXXXXXXXXRDVKPKVANNPYGSSNKQANNPYAGG 531
MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGP PKIGDPINFSEDSSA VK ELGGG NNN TGHY XX XXXXXXXXRDVKPKVANNPYG+SNKQ AGG
Sbjct: 1 MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPAPKIGDPINFSEDSSARVKPELGGGSNNNNTGHYGXXSKPXXXXXXXXRDVKPKVANNPYGASNKQXXXXXAGG 178
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: D7FUU2_ECTSI (Rep-A_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU2_ECTSI) HSP 1 Score: 237 bits (605), Expect = 2.140e-75 Identity = 138/144 (95.83%), Postives = 141/144 (97.92%), Query Frame = 1 Query: 103 MTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGVKQELGGGG-NNNTGHYXXXXXXXXXXXXXXRDVKPKVANNPYGSSNKQANNPYAGG 531
MTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGVKQELGGG NNNTG+Y XXXXXXXXXXXXXRDVKPKVANNPYG++NKQANNPYAGG
Sbjct: 1 MTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGVKQELGGGSSNNNTGNYGXXXXXXXXXXXXXRDVKPKVANNPYGAANKQANNPYAGG 144
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A7S3XQ94_HETAK (Replication protein A subunit n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ94_HETAK) HSP 1 Score: 122 bits (306), Expect = 6.720e-28 Identity = 62/115 (53.91%), Postives = 88/115 (76.52%), Query Frame = 1 Query: 1 MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGTDRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFS 345
MANL S G+I QI+ G G PT+QV+++KK+ AG DR+RL++SDGQ++AQ MLATQ N ++SS +L+ELCI+ L++Y+VN VQ +R++I L ++V SGP PK+GDP N S
Sbjct: 1 MANLTS-GSIQQIVNGEV--TGLTPTLQVINVKKVQGAGADRFRLIISDGQYYAQCMLATQLNHLVSSNELQELCIVKLTNYVVNNVQGRRIVIGLAVEVVSGPVPKVGDPQNSS 112
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: I2FRR5_USTH4 (Replication protein A subunit n=1 Tax=Ustilago hordei (strain Uh4875-4) TaxID=1128400 RepID=I2FRR5_USTH4) HSP 1 Score: 102 bits (254), Expect = 5.850e-21 Identity = 64/147 (43.54%), Postives = 95/147 (64.63%), Query Frame = 1 Query: 7 NLISRGAINQIMGGATGAAGY-NPTVQVVSLKKMTNAGT------DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTP-KIGDPINFSE--DSSAGVKQELGGG---GNNNTGH 408
N +S+GAI Q++ A A NP Q++S+KK+ + T DR+R++LSDG H+AQSMLA+Q+ M+ SG+L++ C++ +S Y N VQN+R++ILL L+V PT ++G P N + S GVKQE G G GN+N G+
Sbjct: 4 NDLSQGAIAQMIQTADPANSVQNPICQILSIKKIQASATSASNVGDRYRIILSDGVHYAQSMLASQKRSMVESGELEKHCLVRISQYASNSVQNRRILILLDLEVAHKPTADRLGSPTNVDDAIKSEGGVKQEGGAGNALGNSNLGN 150
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A317XXN4_9BASI (Replication protein A subunit n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XXN4_9BASI) HSP 1 Score: 101 bits (251), Expect = 1.460e-20 Identity = 60/136 (44.12%), Postives = 85/136 (62.50%), Query Frame = 1 Query: 13 ISRGAINQ-IMGGATGAAGYNPTVQVVSLKKMTNAGT------DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTP-KIGDPINFSEDSSAG-----VKQELG 381
++ GAI Q I T NP Q++S+KK+ T DR+R++LSDG H+AQ+MLA+Q+ M+ SG+L++ CI+ + Y N VQN+R++ILL L V SGP P ++G+PIN E AG VKQE G
Sbjct: 6 LTHGAIAQMIQSSDTSNLVQNPVCQILSIKKIQATSTTAANVGDRYRIILSDGVHYAQAMLASQKRTMVESGELEKNCIVKVLQYAANSVQNRRILILLDLQVLSGPAPDRLGNPINVDEAQKAGGEAGPVKQESG 141
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A835Z8X4_9STRA (Replication protein A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X4_9STRA) HSP 1 Score: 100 bits (250), Expect = 2.020e-20 Identity = 54/112 (48.21%), Postives = 80/112 (71.43%), Query Frame = 1 Query: 13 ISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGT--DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINF 342
+++GAI +I+ A+G G+ P VQV+S+KKMT A +R+R+V+SDGQH QSML T QN++I+SG + E C+I L ++I+N + K ++I+L+ V SG PKIGDP F
Sbjct: 6 VTQGAIQRIIT-ASGQDGFLPIVQVLSIKKMTAAAGQGERYRVVVSDGQHHQQSMLTTSQNDLITSGQMVEGCLICLDEFILNQIGAKSIVIILRASVLSGAMPKIGDPTAF 116
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: R9P362_PSEHS (Replication protein A subunit n=1 Tax=Pseudozyma hubeiensis (strain SY62) TaxID=1305764 RepID=R9P362_PSEHS) HSP 1 Score: 96.7 bits (239), Expect = 6.200e-19 Identity = 56/136 (41.18%), Postives = 90/136 (66.18%), Query Frame = 1 Query: 7 NLISRGAINQIMGGATGAAG--YNPTVQVVSLKKMTNAGT------DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTP-KIGDPINFSE--DSSAGVKQELG 381
N +S+G+I Q++ A A+ NP Q++S+KK+ + T DR+R++LSDG H+AQ+MLA+Q+ M+ SG+L++ C++ ++ + N VQN+R++ILL LDV PT ++G+P N E + GVKQE G
Sbjct: 122 NDLSQGSIAQMIQTADPASSSVQNPVCQILSIKKIQASATSASNVGDRYRIILSDGVHYAQAMLASQKRSMVESGELEKHCLVRITQFASNSVQNRRILILLDLDVVHKPTADRLGNPTNVDEAVKTEGGVKQEGG 257
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A1A6A3J9_9TREE (Replication protein A subunit n=2 Tax=Kwoniella TaxID=490731 RepID=A0A1A6A3J9_9TREE) HSP 1 Score: 93.2 bits (230), Expect = 8.490e-18 Identity = 52/143 (36.36%), Postives = 82/143 (57.34%), Query Frame = 1 Query: 1 MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGT---DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSEDSSAGV------------KQELGG 384
MA+ ++ G + A G P +QV+S+KK+ G DR+RL+LSDG+HF Q+M+ATQ N ++ S +L + +I L+ Y+ N VQ ++L+I+L L++ KIG+P N + +AG KQE+GG
Sbjct: 1 MASPLTAGFCELVFNSADAPEGVTPILQVLSVKKINAPGATGQDRYRLILSDGKHFIQAMIATQLNNLVDSKELDKNVVIKLTGYVTNAVQGRKLVIILNLEIVPWNGEKIGNPTNLEQQQNAGAGASTSAPAQAVPKQEVGG 143
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A0D1CUI6_USTMA (Replication protein A subunit n=10 Tax=Ustilaginaceae TaxID=5268 RepID=A0A0D1CUI6_USTMA) HSP 1 Score: 92.4 bits (228), Expect = 1.580e-17 Identity = 56/136 (41.18%), Postives = 89/136 (65.44%), Query Frame = 1 Query: 7 NLISRGAINQIMGGATGAAG--YNPTVQVVSLKKMTNAGT------DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTP-KIGDPINFSEDSSA--GVKQELG 381
N +S+GAI Q++ + A+ NP Q++S+KK+ + T DR+R++LSDG ++AQ+MLA+Q+ M+ SG+L++ C++ ++ + N VQN+R++ILL LDV PT ++G P N E A GVKQE G
Sbjct: 4 NDLSQGAIAQMIQTSDPASSSVQNPVCQILSIKKIQASATSAANVGDRYRIILSDGINYAQAMLASQKRSMVESGELEKNCLVRVTQFASNSVQNRRILILLDLDVVHKPTEDRLGHPTNVEEAVKAEGGVKQEGG 139
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Match: A0A7S2JN56_9EUKA (Replication protein A subunit n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JN56_9EUKA) HSP 1 Score: 92.4 bits (228), Expect = 1.630e-17 Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = 1 Query: 55 GAAGYNPTVQVVSLKKMTNAGT---DRWRLVLSDGQHFAQSMLATQQNEMISSGDLKELCIITLSDYIVNVVQNKRLIILLKLDVTSGPTPKIGDPINFSED--SSAGVKQELGGGGNNNTGHY 411
G A P +QV+ +K++ N G DR+RL LSDG F QSMLATQ N+++++G+L++ C++ L+++I NVVQN+++II L + V SGP P IG+P +S GV G NN G Y
Sbjct: 20 GHAEKQPLLQVLDVKRIGNPGAPQGDRYRLQLSDGVFFTQSMLATQLNDLVANGELQQHCVVQLTEHICNVVQNRKIIIALGMIVKSGPVPVIGNPRQLESPPITSDGVT------GGNNPGQY 137 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10153.181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10153.181.1 >prot_Ecto-sp13_S_contig10153.181.1 ID=prot_Ecto-sp13_S_contig10153.181.1|Name=mRNA_Ecto-sp13_S_contig10153.181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp MANLISRGAINQIMGGATGAAGYNPTVQVVSLKKMTNAGTDRWRLVLSDGback to top mRNA from alignment at Ecto-sp13_S_contig10153:3..5227- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10153.181.1 ID=mRNA_Ecto-sp13_S_contig10153.181.1|Name=mRNA_Ecto-sp13_S_contig10153.181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10153:3..5227- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10153:3..5227- >mRNA_Ecto-sp13_S_contig10153.181.1 ID=mRNA_Ecto-sp13_S_contig10153.181.1|Name=mRNA_Ecto-sp13_S_contig10153.181.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10153:3..5227- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |