mRNA_Ecto-sp13_S_contig7032.18083.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7032.18083.1
Unique NamemRNA_Ecto-sp13_S_contig7032.18083.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7032.18083.1 vs. uniprot
Match: A0A6H5JRG5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRG5_9PHAE)

HSP 1 Score: 607 bits (1565), Expect = 2.210e-214
Identity = 392/405 (96.79%), Postives = 395/405 (97.53%), Query Frame = 1 
Query:    1 MRGTRFKPSGGMTTTIKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTSLSSNPDGCVADYDAAAGVDYFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYISIPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQDVIDNEALVNASVEVAFGDSLTTSWCENATMVHNGVAVVAYLESGEAVGLGRAETIKLFSLFYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTVAWFPFLPTDQDSLYYEAGSGWGEPTLDSYYGQAVNDTGGTMLDCGVVDGLMTDEEMLACFADADICVFAADYGEVELFFDADVLSQLRCIQNQTAYDVTLSGINAWFEAIWVEPHV 1215
            MRG RF P G MTTTIK  XXXXXXXXXXXXXXXXXXXXXXXXXXGS+ LSSNPDGCVADYDAAAGVDYFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYISIPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQD+IDNEALVNASVEVAFGDSLTTS CENATMVHNGVAVVAY ESGEAVGLGRAE IKLFSLFYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTVAWFPFLPTDQDSLYYEAGSGWGEPTLDSYYGQAVNDTGGTMLDCGVV+GLMTDEEMLACFADADICVFAADYGEVELFFDADVLSQLRCIQNQTAYDVTLSGINAWFEAIWVEPHV
Sbjct:    1 MRGKRFNPCGRMTTTIKLLXXXXXXXXXXXXXXXXXXXXXXXXXXGSSPLSSNPDGCVADYDAAAGVDYFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYISIPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQDIIDNEALVNASVEVAFGDSLTTSLCENATMVHNGVAVVAYQESGEAVGLGRAEAIKLFSLFYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTVAWFPFLPTDQDSLYYEAGSGWGEPTLDSYYGQAVNDTGGTMLDCGVVEGLMTDEEMLACFADADICVFAADYGEVELFFDADVLSQLRCIQNQTAYDVTLSGINAWFEAIWVEPHV 405
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BLAST of mRNA_Ecto-sp13_S_contig7032.18083.1 vs. uniprot
Match: A0A448ZPI8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPI8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.120e-18
Identity = 76/283 (26.86%), Postives = 126/283 (44.52%), Query Frame = 1 
Query:  412 TDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQDVIDNEALVNASVEVAFGDSLTTSWCENATMVHNGVAVVAYLESGEAVGLGRAETIKLFSLFYNEEARANELFDEIETVWFCTKT-----NAQGCSLELDESPTVAWFPFL------------PTDQDSLYYEAGSGWGEPTLDSYYGQAVNDTGGTMLDCGVVDGLMTDEEMLACFADADICVFA-ADYGEVELFFDADVLSQLRCIQNQTAYDVTLSGINAWFEAIWVE 1206
            T  +P +ELLG R+SIVAY G+   + SPC+  +++  T +     +    +++ID+    N    +  G S              G  V+    + E   +   + I  F+ FYN E  AN +   ++  + C+        A+   LE +E PT+ W  +L            PT   + Y E  +  G   L    G  VN T G+      V   + DEEML    DADI +++ +D+ E+    + + L++++ +QN   YDV   G +AW+E  + E
Sbjct:  140 TPQIPYVELLGLRESIVAYIGDPFYVTSPCMTHMMEGETPMIETVHNYSIQEELIDDFRERNPDAIIVSGPSNNVV----------GEQVIVSSATQERTNVATFDWISFFAAFYNMEGEANRITSNMQESYDCSSDVASFMAAEQRELEAEEGPTIMWANYLTYQNLGWSVGECPTWDHAYYCEYATHCGATVLTRPEGVGVNKTWGSP----TVYWYLNDEEMLDMGMDADILIYSGSDWNEIYALKN-ETLNKMKAVQNGQVYDVLGQGSSAWYEQRYAE 407
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BLAST of mRNA_Ecto-sp13_S_contig7032.18083.1 vs. uniprot
Match: A0A7S2VDN4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VDN4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.300e-14
Identity = 80/289 (27.68%), Postives = 118/289 (40.83%), Query Frame = 1 
Query:  376 ISIPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFD----TVCGQD---VIDNEALVNASVEVAFGDSLTTSWCENATMVHNGVAVVAYLESGEAVGLGRAETIKLFSLFYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTVAWFPFLPTDQDSLYYEAGSGWGEPTLDSYYGQ--------AVNDTGGTMLDCGVVDG--LMTDEEMLACFADADICVFAADYGEVELFFDADVLSQLRCIQNQTAYDVTLSGINAWFE 1191
            +S+PV NV    T  +  +E L +RD I A+  +   I SPC    V+ GT+    T +    ++ GQ+   V D  A       +AF                    VV   E+ E       E +K FS+F+N+E  AN++FD  E  + C K +A     +  E PT+ W           Y +   GW     D+YY +         ++ + G+  +   + G   MT EE +A   DAD          V      D L+Q + + NQ  YD    G NAWFE
Sbjct:  117 LSVPVENVGLTQTTDLTFMEQLNNRDKIRAFLTDPQYIWSPCFAADVEQGTIALLETREDGTPSLVGQNPPAVADMMAFAGKWDSLAFEQ------------------VVKVSENEEKTNAAIFEWVKFFSVFFNQEELANQVFDAAEYRFQCIKKSAAAAVSDA-EKPTLLW---------GRYSDYCKGWDVGECDNYYCEFADVCNVNILSSSEGSNTNASNLCGGPFMTTEEFVAFGKDADYWFIPDTTWNVSQTLFGDELAQFKSVMNQQVYDYQGQGQNAWFE 377
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BLAST of mRNA_Ecto-sp13_S_contig7032.18083.1 vs. uniprot
Match: A0A7S8E8D7_9CHLR (ABC transporter substrate-binding protein n=1 Tax=Phototrophicus methaneseepsis TaxID=2710758 RepID=A0A7S8E8D7_9CHLR)

HSP 1 Score: 82.8 bits (203), Expect = 1.240e-13
Identity = 58/205 (28.29%), Postives = 94/205 (45.85%), Query Frame = 1 
Query:  370 QYISIPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQDVIDNEALVNASVEVAFGDSLTTSWCENATMVHNGVAVVAYLESGEAVGLGRAETIKLFSLFYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTVAWFPFLPTDQDSLYYEAGSGWGEPTLDSYYGQAVNDTGG 984
            Q+I +P  N+ + TT  +P +  LG  D +V    ++  + +P V E  D G +V+  +  T      I+ E ++N   ++   +        +  ++  G+      E  EA  LG+AE IK  +LFYNEEARANE++DE+   +   +      S+  DE PTV W      D           W  P  +++ G  + D GG
Sbjct:  103 QFIEVPTGNLISLTTTELPFVTELGLLDHLVGVD-SIMFVSTPEVIERYDEGEIVEVGSGST------INLEQVLNTDPDLVITNGYNPDTDAHPVLLEAGIFTALLAEYREATPLGQAEWIKYTALFYNEEARANEVYDEVTASY--NEARELAASVPEDERPTVLWNALSTYDNT---------WSIPGAETFPGHLIQDAGG 289
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BLAST of mRNA_Ecto-sp13_S_contig7032.18083.1 vs. uniprot
Match: UPI0019B58EC6 (ABC transporter substrate-binding protein n=2 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019B58EC6)

HSP 1 Score: 73.6 bits (179), Expect = 1.410e-10
Identity = 71/268 (26.49%), Postives = 121/268 (45.15%), Query Frame = 1 
Query:  370 QYISIPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQDVIDNEALVNASVEVAFGDSL-TTSWCENATMVHNGVAVVAYLESGEAVGLGRAETIKLFSLFYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTVAWFPFLPTDQDSLYYEAGSGWGEPTLDSYYGQAVNDTGGTML--DCGVVDGLMTD-EEMLACFADADICVFAADY--GEVELFFDADVLSQLRCIQNQTAY 1155
            Q I +P+  + + +T  +P ++ LG  D++V        + +  V E + +G VV+      V G   ++ E  ++   +V   DS  +  + E+  ++  G++VV   +  E   LG AE +K  +LFYN EA+A  LFD++E  +          + ++ E PTV          D ++Y +G        DSY+ Q + D G   L  D   +  L  D E +L   ADAD  V A  +     ++  + +  +     QNQT Y
Sbjct:  108 QVIEVPIERIISMSTTFLPPLDSLGVADTLVGVD-ETDFVSTASVRERIVSGEVVE------VGGGADVNVELTLDLEPDVVMTDSFGSPEYDEHPKLLEAGLSVVMNGDWVETEPLGWAEWVKFMALFYNREAQATTLFDDVEAHY----NELVALAADVSERPTV----MTGIQYDGIWYTSGG-------DSYFAQILEDAGADYLWADDSTMGSLSLDLESVLERAADADYWVNANQFWFSLDDIAAEDERYTDFAPYQNQTIY 353
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BLAST of mRNA_Ecto-sp13_S_contig7032.18083.1 vs. uniprot
Match: UPI00165D0D55 (ABC transporter substrate-binding protein n=1 Tax=Sinomicrobium weinanense TaxID=2842200 RepID=UPI00165D0D55)

HSP 1 Score: 70.9 bits (172), Expect = 9.400e-10
Identity = 50/165 (30.30%), Postives = 85/165 (51.52%), Query Frame = 1 
Query:  373 YISIPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQDVIDNEALVNASVEVAFGDSLTTSWCENATMVHNGVAVVAYLESGEAVGLGRAETIKLFSLFYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTV 867
            ++++PV NV   +T H+P +E LG  D +  +  +   I S    + VD G V +      +   + I+ E L++   +V  G +L+ S     T+  +G+ VV   +  E   LG+AE IK F+ F+  EA+A+ +F+ IET +     NA+  +  + E PTV
Sbjct:   85 WVNVPVENVVVTSTTHIPALEALGVEDRLTGFP-DTRYISSEKTRKNVDLGRVKE------LGNNESINTEVLIDLQPDVVVGFALSGSNKTYETVQRSGIPVVFNGDWVEESPLGKAEWIKFFAPFFGREAKADSIFNHIETEYL----NARKLTENITEKPTV 238
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BLAST of mRNA_Ecto-sp13_S_contig7032.18083.1 vs. uniprot
Match: A0A7C7MLU3_9FLAO (ABC transporter substrate-binding protein n=3 Tax=Flavobacteriaceae TaxID=49546 RepID=A0A7C7MLU3_9FLAO)

HSP 1 Score: 69.3 bits (168), Expect = 3.030e-9
Identity = 50/187 (26.74%), Postives = 89/187 (47.59%), Query Frame = 1 
Query:  370 QYISIPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQDVIDNEALVNASVEVAFGDSLTTSWCENATMVHNGVAVVAYLESGEAVGLGRAETIKLFSLFYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTVAWFPFLPTDQDSLYYEAGSGW 930
            Q ++IP+  +   +T H+P +E LG  ++++ +  ++  I S    +L+  G V +      +   +  + E L+N + +V  G ++        T+  +G+ VV   +  E   LG+AE IK F  FYN+E +A E+F EIE  +   K  AQ    + +  P+V         +D  Y   G+ W
Sbjct:   87 QKVTIPIKKIVVTSTTHIPSLESLGQENTLIGFP-HLDYISSKKTRDLIQKGKVEE------IGENEHTNTEVLLNLNPDVVIGFAVEGGNKTFETVNKSGIPVVYNGDWTETDPLGKAEWIKFFGAFYNQEQKAEEIFTEIEQEYLSAKKLAQ----QAENQPSVLAGSMY---KDVWYLPYGNSW 259
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BLAST of mRNA_Ecto-sp13_S_contig7032.18083.1 vs. uniprot
Match: A0A1V5T216_9EURY (Periplasmic binding protein n=2 Tax=Euryarchaeota TaxID=28890 RepID=A0A1V5T216_9EURY)

HSP 1 Score: 68.6 bits (166), Expect = 5.730e-9
Identity = 64/209 (30.62%), Postives = 98/209 (46.89%), Query Frame = 1 
Query:  382 IPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQ----ALTFDTVCG-QDVIDNEALVNASVEVAFGDSLTTSWCENATMVHNGVAVVAYLESGEAVGLGRAETIKLFSLFYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTVAWFPFLPTDQDSLYYEAGSGWGEPTLDSYYGQAVNDTGGTML 993
            IP+ NV T     +P I  LG   SI  + G V L+  P   +LV  G +++    AL+ +T+   +D+I+ E   NA   VA G+     +  +  +   G+  +   E  E   LGRAE IK FSLFYN+E  AN++FD+++  ++ TK   +     + + PT+    F   D    +Y  G        +SY      D GG  L
Sbjct:   96 IPLENVVTLGVVQIPFISKLGEISSIKGHNG-VNLVHDPEFKKLVQQGDIIEVGSGALSMNTLLKMEDLIELEP--NAVFCVANGNK---EYDNHYKLQEAGLKPIISAEWMEDSPLGRAEWIKFFSLFYNKEKTANQVFDQVKQNYYETKEKVRN----ITQKPTL----FSGIDYQGSWYAPGG-------NSYVAAFFRDAGGNYL 283
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BLAST of mRNA_Ecto-sp13_S_contig7032.18083.1 vs. uniprot
Match: UPI001C59A303 (ABC transporter substrate-binding protein n=1 Tax=Mesonia sp. JHPTF-M18 TaxID=2796128 RepID=UPI001C59A303)

HSP 1 Score: 67.8 bits (164), Expect = 9.560e-9
Identity = 44/152 (28.95%), Postives = 78/152 (51.32%), Query Frame = 1 
Query:  376 ISIPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQDVIDNEALVNASVEVAFGDSLTTSWCENATMVHNGVAVVAYLESGEAVGLGRAETIKLFSLFYNEEARANELFDEIETVWFCTKTNAQ 831
            ++IP+  V   +T H+P +E LG   ++V +  ++  I S    +L++ G V +      +   + I+ E L+N + +V  G ++        T+  +G+ VV   +  E   LG+AE IK F  FYN+E +A+ +F+ IE  +   K  AQ
Sbjct:   87 VTIPIQRVVVTSTTHIPSLESLGQESTLVGFP-HLDYISSEKTRDLINKGKVEE------IGENEHINTEVLLNLNPDVVIGFAVEGGNKTLETVKKSGIPVVYNGDWTETNPLGKAEWIKFFGAFYNQEQKADSIFNRIEKEYLSAKKIAQ 231
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7032.18083.1 vs. uniprot
Match: A0A2H0GAK5_9FLAO (ABC transporter substrate-binding protein n=1 Tax=Flavobacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_32_9 TaxID=1974008 RepID=A0A2H0GAK5_9FLAO)

HSP 1 Score: 66.2 bits (160), Expect = 3.130e-8
Identity = 75/292 (25.68%), Postives = 130/292 (44.52%), Query Frame = 1 
Query:  373 YISIPVSNVSTGTTDHVPRIELLGHRDSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQ-DVIDNEALVNASVEV--AFGDSLTTSWCENATMVHNGVAVVAYLESGEAVGLGRAETIKLFSLFYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTVAWFPFLPTDQDSLYYEAGSGWGEPTLDSYYGQAVNDTGGTML--DCGVVDGLMTDEEMLACFA-DADICVFAADYGEVELFFDAD-VLSQLRCIQNQTAYDVTL----SGINAWFEAIWVEPHV 1215
            +I  P+ +++  +  H+  +E LG ++SIV  +G    + SP + E + N  + +        GQ +V++ E LVN + EV  A+G   T++   N  +   G+  V   E  E   LG+AE IK  + FYNEE +A+ +FD +E  +          + +    PTV  F  +P             W  P   S+  +   D G T L  D       +  +E++   A DAD  +    Y  ++   + D +L   + ++ Q  Y+  L    +  N ++E+  V PH+
Sbjct:   93 FIKTPIKSIACLSLTHIAFLEKLGLQNSIVGLSG-CNYVSSPAIKERIKNQFIKEV-------GQHEVVNYELLVNMNPEVIMAYGIDQTSATKIN-KLKTLGLTTVLNAEYMETHPLGQAEWIKFIAAFYNEEIKADSIFDYVEKEYL----QLVEIAAKTTNKPTV--FTGMPWS---------GAWYVPGGLSFQAKLFKDAGATYLWADNQEERSFIKSKEVILDEALDADFWLNVNAYHSIKEIVETDALLKNFKALKEQQIYNNNLRENAAAGNDYWESGVVHPHI 360
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7032.18083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRG5_9PHAE2.210e-21496.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A448ZPI8_9STRA3.120e-1826.86Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2VDN4_9STRA2.300e-1427.68Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S8E8D7_9CHLR1.240e-1328.29ABC transporter substrate-binding protein n=1 Tax=... [more]
UPI0019B58EC61.410e-1026.49ABC transporter substrate-binding protein n=2 Tax=... [more]
UPI00165D0D559.400e-1030.30ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A7C7MLU3_9FLAO3.030e-926.74ABC transporter substrate-binding protein n=3 Tax=... [more]
A0A1V5T216_9EURY5.730e-930.62Periplasmic binding protein n=2 Tax=Euryarchaeota ... [more]
UPI001C59A3039.560e-928.95ABC transporter substrate-binding protein n=1 Tax=... [more]
A0A2H0GAK5_9FLAO3.130e-825.68ABC transporter substrate-binding protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7032contigEcto-sp13_S_contig7032:1138..7500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score93.2
Seed ortholog evalue3e-16
Seed eggNOG ortholog44056.XP_009035531.1
Model size1239
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG OGs28PRB@1,2QWDR@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_003560.1
Cds size1239
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7032.18083.1prot_Ecto-sp13_S_contig7032.18083.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7032 1138..7500 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463964.8686855-CDS-Ecto-sp13_S_contig7032:1137..15721681463964.8686855-CDS-Ecto-sp13_S_contig7032:1137..1572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7032 1138..1572 +
1681463964.8809063-CDS-Ecto-sp13_S_contig7032:2463..26371681463964.8809063-CDS-Ecto-sp13_S_contig7032:2463..2637Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7032 2464..2637 +
1681463964.8905406-CDS-Ecto-sp13_S_contig7032:3458..36471681463964.8905406-CDS-Ecto-sp13_S_contig7032:3458..3647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7032 3459..3647 +
1681463964.9006195-CDS-Ecto-sp13_S_contig7032:5079..52711681463964.9006195-CDS-Ecto-sp13_S_contig7032:5079..5271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7032 5080..5271 +
1681463964.9108374-CDS-Ecto-sp13_S_contig7032:6284..63831681463964.9108374-CDS-Ecto-sp13_S_contig7032:6284..6383Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7032 6285..6383 +
1681463964.9216049-CDS-Ecto-sp13_S_contig7032:7350..75001681463964.9216049-CDS-Ecto-sp13_S_contig7032:7350..7500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7032 7351..7500 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7032.18083.1

>prot_Ecto-sp13_S_contig7032.18083.1 ID=prot_Ecto-sp13_S_contig7032.18083.1|Name=mRNA_Ecto-sp13_S_contig7032.18083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=413bp
MRGTRFKPSGGMTTTIKLLLGAAAAVGLLGGNNNNNVVLAQTTTSGSTSL
SSNPDGCVADYDAAAGVDYFPDKAVIEYAETFTVDYLPTYKVLTVSDGFS
DTVYVLYQCGTPVPDLDDTTVVQQYISIPVSNVSTGTTDHVPRIELLGHR
DSIVAYTGNVGLIGSPCVDELVDNGTVVQALTFDTVCGQDVIDNEALVNA
SVEVAFGDSLTTSWCENATMVHNGVAVVAYLESGEAVGLGRAETIKLFSL
FYNEEARANELFDEIETVWFCTKTNAQGCSLELDESPTVAWFPFLPTDQD
SLYYEAGSGWGEPTLDSYYGQAVNDTGGTMLDCGVVDGLMTDEEMLACFA
DADICVFAADYGEVELFFDADVLSQLRCIQNQTAYDVTLSGINAWFEAIW
VEPHVSYPTDVD*
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mRNA from alignment at Ecto-sp13_S_contig7032:1138..7500+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7032.18083.1 ID=mRNA_Ecto-sp13_S_contig7032.18083.1|Name=mRNA_Ecto-sp13_S_contig7032.18083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7032:1138..7500+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGGAACGCGGTTCAAGCCAAGTGGCGGCATGACGACCACGATCAA
ACTTCTGCTAGGGGCGGCCGCAGCCGTAGGCCTCCTCGGGGGCAACAACA
ACAACAACGTCGTCCTGGCCCAGACTACGACTAGCGGGTCGACGTCTCTT
TCGAGCAACCCGGACGGCTGCGTGGCCGACTACGACGCCGCGGCGGGCGT
GGACTACTTCCCGGACAAGGCCGTCATCGAGTACGCGGAGACGTTCACGG
TGGATTACTTGCCGACGTACAAGGTCCTCACGGTGTCGGATGGGTTCTCG
GACACGGTGTACGTCCTCTACCAGTGCGGCACGCCGGTGCCGGACCTCGA
CGACACGACCGTCGTGCAGCAGTACATCAGCATCCCCGTGTCGAACGTGT
CTACCGGAACCACAGACCACGTCCCGAGAATTGAGGTGCAGTCTTTTCGG
GCGTGTTGCGCGGTAATGTGGCCCCTCTTACCCACACTTTTCTTCTTGGC
AGCAAAAACACTCTTGTTCAATACACCAAGTGCTTCGCTTTAACTAGACT
GATTTGATGTCCCACGCTTCAGAATGGATCCGGTTCTGCTGTGTGGGCAT
GGAAGTAATATTGATTGATGGGGATGGAATGTGTTCTTGATGCCAGCAAT
CTCGGCGCTGCTCATGTATTGACCAGTCGGTACCCCTGCAATGTAAGGTT
TTTATCCTCTTGCTGTCTCCGTGTCTCCGTGTCTCCGTCTCCTTCTCGTC
TACGATAGTCCTCATGCGGTGTCGGGCCGCCTCCGGCTCCGGAAAACCAT
GGATCGGCCCGTTGACCTCCGGTATCGGCCCGTTGACCTCCGGTGCTATT
GGATTGCCGGTGGCACAATGTCCTCATCAACTCCCGGCACACAGCTAGCC
GTGGCTAACAGAAAAATTGTGGTTTCCAGTGATGCAGTTGTATTCCCAGC
AGTTGCATCTCAGCACCACAAGGGCCGCACTGCTGTGCCGGTGCTCAGGC
GGGAGATTCCCCCGTAAATATTCCCAATCTTGTTTATCTCTTCCGCCCGC
CCATAAAATGAAATAGAGGCAGGGCTAAAATGCTTTGTTTACCATGCATT
ACCTGGTGCGGTGGTGTCTCGCCGTTTGTGCGATCCTCTTCTTCGAAGTG
TAAGTGGCTGCGTGAAGAGAGCAAGCGGGCGTTACTTCTACTACTCCTAT
CGTAGCTAGAGGGTGGAGACCAAGTCACGTCTAAATCGGGAACGTGCTGC
ACGCCAACCGCCCCTCGTGCCCCCCCCCTCGCGTCTCGCGTGCTCACACA
CGAAAAACATATCGGATCGATCCCAGCTCCTGGGACACAGGGACAGCATC
GTGGCCTACACCGGCAACGTGGGGCTGATCGGTTCGCCATGCGTGGACGA
ACTTGTCGACAACGGGACTGTAGTTCAGGCCCTGACGTTCGACACCGTGT
GCGGCCAGGACGTCATCGACAACGAGGCCCTCGTCAACGCCTCGGTAGAG
GTGCGTTGGTGCATGCTTGCGAGCTTGGGAATGTTGGCAGGAAAAAAGAA
GAAGAAAAAACACCACTTGGTTCCGGTTGATGTTGTGTGATTTTCGGCAC
CGGTTTTATCGTGTTCGCATCCATGTGTACAAACGAAGCGGTACTACAGC
AGTACTATCACTCTTGTTCTTGTTCACAAGATCATGACGTCAGGAGGAAG
GCCCGGTGGAAAACATTGATAGCGGCATAATTTATCTATGTACCTCCTCG
TAAAACGGCTTCGGCAAGAGGGCTGATGGCGTTTCGACACCCAAGAGGCC
AGCCCCAACTCACCCCCGAACCGGTTCTCACCAAACATTGCCGCAAGCTA
AAATATCGCATGCATATGGTTGACCAAGCCACGCGTACGCTCGCTTCCTC
CTACCGGTACTCTCTAAGCAACAGCCTGGTGGGGCGGCGAACACACCCGC
TAGCTCAAGAGTTCGTACACATGTGACAACCGGTTACGGGACCTCCTCGC
GCGAACGGTTGTTTCTTTGTTGTTCGCCGTGCACTGCCGCAAAGTGTGCA
AGGTGCTCGGCCGTTTATTTTGCCACGCACAATTCTAGAACGCAAATACG
CACTGGCAACACAACGCCCCCCTCCCCCCCTCTCTCTCCGGACTGCCTTC
GGGAGGATTCCATTAAATATGAAATAGACGGTGGAGGGTTCGTACTCCTA
TCCCGAACCCCACCTACTAAAACGAAGGTTATTGCACTCTTGAAGGCTGC
TGCTCTCCCTCCGTCCCTGCAAAACAGTAGCGCTTCGAATCACAAAACGC
CTCTGGACCGAAAACACACAGGTGGCCTTCGGGGACTCTCTCACGACCTC
GTGGTGCGAGAACGCCACCATGGTGCACAACGGCGTGGCTGTCGTGGCGT
ACCTGGAGAGCGGGGAGGCTGTGGGGCTCGGCCGCGCGGAGACCATCAAG
CTCTTCTCGCTGTTCTACAACGAGGAGGCCAGGGCGAACGAGCTCTTCGA
CGAGATCGAGGTACAACAGTGGTCCCGATAAGTGATCGCCGTACCGAATA
GATCAAAACAGCAGTAGCCTAACACTAACTTTAACATGTTAGAGAAAGGA
TGCAAAGGATCGGCGAAGTTGGGTAATTGATAAGATCTGCATACCCCGTC
CCTGGTCCATATCCTCAAACACCTTAGTCACTCTCGAACGCGATCCTTCC
CCGATTTATCGCCGTAAAACTTCCTTGATACAACCTAAAACCTACTCAGT
TTGTACTCAGGGACCTTCCCCCAGTAGCACTGGTCCCGATAGAGCGCGTG
GTCTTTGTTTGTCACTACCAACACCGCGATACATATCGGGCAGTAATTTA
CACACATACGTCGGCGAGCGGCGTACCTTCCTTAACGATGGCCGCTACTG
CTCCTGCTTGACGCCCGTGTTGGGCGTGGTCTGAATGAACCTGCCGTAGT
TTCGTTGGTACCGCTTCACGGCGTGTACATACCTTTCGCCAGTTCTACGC
TTTCGGAACATTTTTTTGTAGAAAAACCAAACTCGCATCGGCTGTTGACT
GAGACTCTCTGGCTATTTTTTGTGTTATATTTCTTGTACCGTGTTTTTGC
GGGGTTTTCTTCCTCTCGCACTTGCAGGTGTAGAGACTACCGTAGGCGAC
AAAAGATGTCACGCCCCGTGAACGAGTTCTCAAAAAAGCTCGTTTACTCC
AGGGCAACAAATAGAGTGACGGTGTTATAAACGAAAGTGTTCGAACCGCC
TTGTCGAGAGCTTGCCGAAAACGTACCCTTACTGATTCATACATCTTGTT
CGTCGTGGATTCTTGGACTTTTGACGAACAGTTCCGGGGGGATTGACACA
ACTTAGCGTGGCTCTCACGGTATCCCTTTGCATTGACATGAGACATGCCT
CGTTCGTCAACCCTCGCTTGTTGAGACTCCCCCCAGAAAACAAGTGCAGG
GAGATGTTTGAGGCATGGGATAGCGAGGGGAAGACGTTAGCTGTACTGGG
GCATATGAAGTGGGTTGAAAAAAGGCGGGAAGTGATATCGGTCGGATAGA
TAGAGTAGGATAGACATTTTGGAGCCACCGTTGGCAAAGTAGCAAGGAGC
GATTGGCCATCTGTGATCGGTCCTGTGGGAACAATGTTACGTCCTCTCGA
AGACCCGTGGTCAATGATCAAAATGCTATGGCGTGCAAAATACAGGAATA
CCCCCCCTCCATCCCCCGACCTTCTGGTTTACCCTTATAAAACGTATATA
GCCTGGGGCGGCTAAAACTCGGCATATCGCAATGTCCCACCGTTGCAGGG
ATGCGAGGCCAATGCTCCAACGACTACGGCATGAAATTACACTAGTACCC
CCCCCACCCACACCTTGCTGGTACTCCCCAAAAACCTGGCCATTTATCCT
CTCGCGCCCGACTCGCACCCCACACGCCACGCGGCCCTGCAGACGGTGTG
GTTCTGCACGAAGACCAACGCTCAAGGGTGCAGCCTCGAGCTGGACGAGT
CACCCACCGTGGCTTGGTTCCCTTTCCTCCCGACGGACCAGGACTCGCTG
TACTACGAGGCCGGCTCGGGTTGGGGCGAGCCCACCTTGGACTCTTACTA
CGGTCAGGCCGTCAACGATACGGGAGGGACTATGGTGAGTTGGGTTGCTC
GGGCGGTTTTCCGCCATTTAGATGCAGGACCTAACCAATCGGGTTTAGCG
CAGCACAGCAGCTTTCGCGACGATATTGAGCTTGGTTGGAGTACAGTGTG
GAGTTGGTAGGGTGAGGGCTGGGAATACGAAACCCCCCTGTTCTGTTCCA
AACAGTAAAATCCTTGTGACGGCGGTCCGTTCGGCGAAGGGGGGCTAAAT
GTTCGTTATGAATTTCCCCAAACAAATCCCAAATTTCACGCTCCCACCAA
CTAGCGGAGGGGGGGGCGGGAAGGCACCCCCTACCAGAAGTTTATGTGTT
GATGTAGGTTGGAGTTTCGACAGGCACGGGGGAGGGGGCACGGTTGTTCT
TTGTGCACTGCCGTCTATCTTGCACCGGGTGTGGGAGTTATTTTGCAGAA
GAAGAGGAATTGTTGTGTTGGACGAGATTCTCCCTCAAGGGCGGCGACAT
GGCGGGCAGAATACAAACAAATTTTTTTTTCTCCGGCAAGCGTGTGGCCG
CGGTGCCCGTATGTTTTTTCCATGGTAGTGCGGCGGTCGTCAGACTACAG
CGGTATCCACCCCCGGTAAGTGTTGAGGTGGTGCATGATCTACCGCAAAT
ACCTGCAAGAGCGTGAAACAAAGATGCGGGTGTGTGTTGGCGAAAAAACG
AGAGGCATCCCTTCGACATCCATTCTCTAGCGAATACCCGACGCGTTACT
TGCTGTGGTACAGCATGCCCCCTTGCGGCATTTTTTACCGATGCCTCTCT
CTTTCCCTCATGCCCTCGTTACACGTGCCGTCCAATCGACGCGCGTATGG
CGTATGGCGTATTTCGTGGTAATACGCGTGCACGAGTTTGTTTGCTATTT
TGATCTATTTCCACCCTTTTCCTCCCTTGGCCGCTGCTTCTGACTGCTAG
TCTATCCGTCGGTCTGCTTGCCTGCCTGTCTGTCTGTCTGTGTTTGTTTG
TGTCCGCCGTTCTTTCTGCCTGTCATGTCTGTCTTTCTCGTGACCAGTTG
GATTGCGGTGTGGTCGATGGCTTGATGACGGATGAGGAGATGCTGGCCTG
CTTCGCAGATGCCGACATCTGCGTCTTCGCCGCCGACTACGGCGAGGTGT
GTAACGACGACACATCAAGACGTCCTCCATGACAGCAGCCCTTCCTGACG
CGTCTTGATTCCTTTGGTGAAGGATTGAAAGTATTGAATTTGAAAGGTAG
GTATATGCCTTCGACGTCATCAGAAATCTCTTTCAGGGGCGAAAACGAAA
ATAACAATCTCGCTGCAAAACTGAACCGTTTCGCCGGCGGTTGACTGCAG
CTTGGTGCGGGTACTTTTGTGAAGCACGCGCGGGGGAGCTTTGTGTGAAG
AACCGAAGGCCTGGACACGTGCTCTCAACTGTCAGCTTCCAGCCTTGAGT
GATTTTGCTTACAGCAGTGAGATCGAAATCGTGCGATCGCCTGCATTGGT
GACTTGATACATCTTGCGTGTATTGTACGCGCGTGTCCATGTCTTGTTGA
GTCGTTGTCATCTGTGAGACTCAAAGTGTGACGGACCTGAGCTATCCACC
AGTTTTGGGATTGAAATGGGCTCCTCGCATGCTTGCGTCTTTTTTCTTTC
TCCATGTTTTTGTCCTTTGTAACGGCCGTGGTCAGCGTGTGTTCGACTGC
AGTAGTAGTTGGAAGAAAGGCGCTTCTTCAGAGGCGGCGGCGGCGCGCTT
TGGCGGATCGAAAACGCCTGCCGGGTGAAAAGTGGTCGATCGCACGCACT
TCCATCACACTCAGTTCTCCTGTCCGACCCTATCTCGTTGACACCGCATG
AAAGTGCCGCATAGCGGCTTGTGTCTGCTTGCGTTGCAAGAAGAGTAGCC
TACTGCGACAGTAATGGATTTTTTGTACGTGGCTCAAGCTCCTGAGCTGG
TACATACCCTGCTGCTGACATGGTGGACGTGTAAATCAGGCTGCAGTGTG
GAAGTAACATTGTCGCACGTGATGCAGGCACGGCGGATAGTGGGTCCTCA
CGCTAGTCTCATGTTTCCGTGTTCGTCCTGCTGTACGGTTTGATCGGTTA
CGAATCGCCGCAGGTGGAGTTGTTCTTCGACGCCGACGTGCTGAGCCAGC
TCCGCTGCATCCAGAACCAGACGGCCTACGACGTCACCCTCTCCGGCATC
AACGCGTGGTTCGAGGCCATCTGGGTCGAGCCTCACGTGAGCTACCCTAC
CGATGTAGACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7032:1138..7500+

>mRNA_Ecto-sp13_S_contig7032.18083.1 ID=mRNA_Ecto-sp13_S_contig7032.18083.1|Name=mRNA_Ecto-sp13_S_contig7032.18083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7032:1138..7500+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGGAACGCGGTTCAAGCCAAGTGGCGGCATGACGACCACGATCAA
ACTTCTGCTAGGGGCGGCCGCAGCCGTAGGCCTCCTCGGGGGCAACAACA
ACAACAACGTCGTCCTGGCCCAGACTACGACTAGCGGGTCGACGTCTCTT
TCGAGCAACCCGGACGGCTGCGTGGCCGACTACGACGCCGCGGCGGGCGT
GGACTACTTCCCGGACAAGGCCGTCATCGAGTACGCGGAGACGTTCACGG
TGGATTACTTGCCGACGTACAAGGTCCTCACGGTGTCGGATGGGTTCTCG
GACACGGTGTACGTCCTCTACCAGTGCGGCACGCCGGTGCCGGACCTCGA
CGACACGACCGTCGTGCAGCAGTACATCAGCATCCCCGTGTCGAACGTGT
CTACCGGAACCACAGACCACGTCCCGAGAATTGAGCTCCTGGGACACAGG
GACAGCATCGTGGCCTACACCGGCAACGTGGGGCTGATCGGTTCGCCATG
CGTGGACGAACTTGTCGACAACGGGACTGTAGTTCAGGCCCTGACGTTCG
ACACCGTGTGCGGCCAGGACGTCATCGACAACGAGGCCCTCGTCAACGCC
TCGGTAGAGGTGGCCTTCGGGGACTCTCTCACGACCTCGTGGTGCGAGAA
CGCCACCATGGTGCACAACGGCGTGGCTGTCGTGGCGTACCTGGAGAGCG
GGGAGGCTGTGGGGCTCGGCCGCGCGGAGACCATCAAGCTCTTCTCGCTG
TTCTACAACGAGGAGGCCAGGGCGAACGAGCTCTTCGACGAGATCGAGAC
GGTGTGGTTCTGCACGAAGACCAACGCTCAAGGGTGCAGCCTCGAGCTGG
ACGAGTCACCCACCGTGGCTTGGTTCCCTTTCCTCCCGACGGACCAGGAC
TCGCTGTACTACGAGGCCGGCTCGGGTTGGGGCGAGCCCACCTTGGACTC
TTACTACGGTCAGGCCGTCAACGATACGGGAGGGACTATGTTGGATTGCG
GTGTGGTCGATGGCTTGATGACGGATGAGGAGATGCTGGCCTGCTTCGCA
GATGCCGACATCTGCGTCTTCGCCGCCGACTACGGCGAGGTGGAGTTGTT
CTTCGACGCCGACGTGCTGAGCCAGCTCCGCTGCATCCAGAACCAGACGG
CCTACGACGTCACCCTCTCCGGCATCAACGCGTGGTTCGAGGCCATCTGG
GTCGAGCCTCACGTGAGCTACCCTACCGATGTAGACTAG
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