mRNA_Ecto-sp13_S_contig7022.18071.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7022.18071.1
Unique NamemRNA_Ecto-sp13_S_contig7022.18071.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7022.18071.1 vs. uniprot
Match: D7G4V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4V6_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.380e-7
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    1 PLTKARVTVSSGRVQFYSSSINITPQVGAAE 93
            PLTKARVTVSSGRVQFYSSSINITPQV   E
Sbjct:  186 PLTKARVTVSSGRVQFYSSSINITPQVPEGE 216
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BLAST of mRNA_Ecto-sp13_S_contig7022.18071.1 vs. uniprot
Match: A0A6H5JEL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL4_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.720e-6
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1 
Query:    1 PLTKARVTVSSGRVQFYSSSINITPQV 81
            PLTKARVTVSSGRVQFYSSSINITPQ+
Sbjct:  266 PLTKARVTVSSGRVQFYSSSINITPQL 292
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7022.18071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4V6_ECTSI4.380e-790.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEL4_9PHAE3.720e-696.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7022contigEcto-sp13_S_contig7022:833..1144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size314
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.5953465-CDS-Ecto-sp13_S_contig7022:832..9671681463963.5953465-CDS-Ecto-sp13_S_contig7022:832..967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7022 833..967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.6069996-UTR-Ecto-sp13_S_contig7022:967..11441681463963.6069996-UTR-Ecto-sp13_S_contig7022:967..1144Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7022 968..1144 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7022.18071.1prot_Ecto-sp13_S_contig7022.18071.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7022 833..967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7022.18071.1

>prot_Ecto-sp13_S_contig7022.18071.1 ID=prot_Ecto-sp13_S_contig7022.18071.1|Name=mRNA_Ecto-sp13_S_contig7022.18071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
PLTKARVTVSSGRVQFYSSSINITPQVGAAEGPVRFLLLPSTLP*
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mRNA from alignment at Ecto-sp13_S_contig7022:833..1144+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7022.18071.1 ID=mRNA_Ecto-sp13_S_contig7022.18071.1|Name=mRNA_Ecto-sp13_S_contig7022.18071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7022:833..1144+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTTGACAAAAGCGAGAGTGACCGTGTCGAGTGGTCGCGTACAGTTCTA
CAGCTCCTCGATCAACATCACTCCGCAGGTAGGTGCTGCGGAAGGGCCAG
TCAGATTTTTGTTGTTGCCATCGACGTTGCCCTGATGACTTTTGTTGTCC
CTGTGTGGCCAGGGTGGTCAGGTGCGACCCTCTACGTTCGATTTTGGAAG
TGAGGAAAACACCGCTTTGAGTGGCGCTGTCTTCTGTGCAATTCGGTGCC
GGGAAACTCCGATACTCACGAAATCGTACCAACAAACTCCGATACCCCTG
AGCTGCTGAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7022:833..1144+

>mRNA_Ecto-sp13_S_contig7022.18071.1 ID=mRNA_Ecto-sp13_S_contig7022.18071.1|Name=mRNA_Ecto-sp13_S_contig7022.18071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7022:833..1144+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTTGACAAAAGCGAGAGTGACCGTGTCGAGTGGTCGCGTACAGTTCTA
CAGCTCCTCGATCAACATCACTCCGCAGGTAGGTGCTGCGGAAGGGCCAG
TCAGATTTTTGTTGTTGCCATCGACGTTGCCCTGA
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