mRNA_Ecto-sp13_S_contig6983.17993.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6983.17993.1
Unique NamemRNA_Ecto-sp13_S_contig6983.17993.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6983.17993.1 vs. uniprot
Match: D7G3V3_ECTSI (Protein N-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3V3_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 2.670e-80
Identity = 129/139 (92.81%), Postives = 132/139 (94.96%), Query Frame = 1 
Query:    1 SNDELLQFYGFVEADCPADTYVLDDVAKSLGVPGAKGGAPTKEVVIRRGAEVVSAETLQYLRALLGAAEGGGGGDSAVWTALRTVCEAELSQVRPDAQGAAGDAGRTVRERLALAFRREKASVLDEAIRNLEKLEERAS 417
            SNDELLQFYGFVEADCPADT+VLDDVAKSLGVPGAKGGAPTKEVVIRRGAEVV+AETL+ LRALLGA EG GGGDS VWTALRTVCEAELS VRPDAQG AGDAGRTVRERLALAFRREKASVLDEAIRNLEKLEE AS
Sbjct:   19 SNDELLQFYGFVEADCPADTFVLDDVAKSLGVPGAKGGAPTKEVVIRRGAEVVNAETLEDLRALLGAEEGAGGGDSTVWTALRTVCEAELSHVRPDAQGTAGDAGRTVRERLALAFRREKASVLDEAIRNLEKLEEGAS 157
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BLAST of mRNA_Ecto-sp13_S_contig6983.17993.1 vs. uniprot
Match: A0A6H5KDV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV2_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 2.660e-77
Identity = 133/139 (95.68%), Postives = 134/139 (96.40%), Query Frame = 1 
Query:    1 SNDELLQFYGFVEADCPADTYVLDDVAKSLGVPGAKGGAPTKEVVIRRGAEVVSAETLQYLRALLGAAEGGGGGDSAVWTALRTVCEAELSQVRPDAQGAAGDAGRTVRERLALAFRREKASVLDEAIRNLEKLEERAS 417
            SNDELLQFYGFVEADCPADTYVLDDVAKSLGVPGAKGGAPTKEVVIRRGAEVVSAETL+ LRALLGAAEG GGGDSAVWTALRTVCEAELSQVRPDAQGAAGDAGRTVRERLA AFRREKASVLDEAIRNLEKLE  AS
Sbjct:  378 SNDELLQFYGFVEADCPADTYVLDDVAKSLGVPGAKGGAPTKEVVIRRGAEVVSAETLENLRALLGAAEGPGGGDSAVWTALRTVCEAELSQVRPDAQGAAGDAGRTVRERLASAFRREKASVLDEAIRNLEKLEGGAS 516
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BLAST of mRNA_Ecto-sp13_S_contig6983.17993.1 vs. uniprot
Match: A0A7S4T5D2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4T5D2_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 2.510e-6
Identity = 50/137 (36.50%), Postives = 62/137 (45.26%), Query Frame = 1 
Query:    1 SNDELLQFYGFVEADCPADTYVLDDVAKSLGVPGAKGGAPTKEVVIRRGAEVVSAETLQYLRALLGAAEGGGGGDSAV-----WTALRTVCEAELS--------QVRPDAQGAAGDAGRTVRERLALAFRREKASVL 372
            SND LLQ+YGFVE DCP D Y +D +A  L    A  G   +  + R G +  S + L  L A    ++GG    SA      W A+   CEAEL         ++  D  G AG A R         FR EK  VL
Sbjct:  390 SNDALLQYYGFVERDCPHDVYCMDLLAH-LDSEAASAGDTLEVELSRTGPDQKSMDELCQLLA----SDGGESPTSAATEALAWKAVALACEAELQRLPAGEAHELAMDVPGPAGVAAR---------FRAEKEKVL 512
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BLAST of mRNA_Ecto-sp13_S_contig6983.17993.1 vs. uniprot
Match: A0A7S0AKD2_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AKD2_9DINO)

HSP 1 Score: 53.5 bits (127), Expect = 2.970e-6
Identity = 36/96 (37.50%), Postives = 48/96 (50.00%), Query Frame = 1 
Query:    1 SNDELLQFYGFVEADCPADTYVLDDVAKSLGVPGAKGGAPTKEVVIRRGAEVVSAETLQYLRALLGAAEGGGGGDSAV-WTALRTVCEAELSQVRP 285
            SND LLQ+YGFVE DCP D Y +D + + L    +  G      + R G +  S + L  L A  G  E       A+ W A+   CEAEL ++ P
Sbjct:   42 SNDTLLQYYGFVERDCPHDVYSMD-ILQHLDPEASSAGTTLWVELSRTGPDRRSMDELCLLLADAGEDEASSPLTEALAWRAVALACEAELQRLPP 136
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6983.17993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G3V3_ECTSI2.670e-8092.81Protein N-methyltransferase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KDV2_9PHAE2.660e-7795.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4T5D2_9DINO2.510e-636.50Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S0AKD2_9DINO2.970e-637.50Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6983contigEcto-sp13_S_contig6983:3..2524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size420
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionprotein N-methyltransferase
Ec32 orthologEc-01_004400.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463957.2518656-CDS-Ecto-sp13_S_contig6983:2..711681463957.2518656-CDS-Ecto-sp13_S_contig6983:2..71Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6983 3..71 +
1681463957.2694278-CDS-Ecto-sp13_S_contig6983:258..3341681463957.2694278-CDS-Ecto-sp13_S_contig6983:258..334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6983 259..334 +
1681463957.279327-CDS-Ecto-sp13_S_contig6983:1164..12591681463957.279327-CDS-Ecto-sp13_S_contig6983:1164..1259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6983 1165..1259 +
1681463957.2886956-CDS-Ecto-sp13_S_contig6983:1511..16361681463957.2886956-CDS-Ecto-sp13_S_contig6983:1511..1636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6983 1512..1636 +
1681463957.2985961-CDS-Ecto-sp13_S_contig6983:2469..25241681463957.2985961-CDS-Ecto-sp13_S_contig6983:2469..2524Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6983 2470..2524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6983.17993.1prot_Ecto-sp13_S_contig6983.17993.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6983 3..2524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6983.17993.1

>prot_Ecto-sp13_S_contig6983.17993.1 ID=prot_Ecto-sp13_S_contig6983.17993.1|Name=mRNA_Ecto-sp13_S_contig6983.17993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
SNDELLQFYGFVEADCPADTYVLDDVAKSLGVPGAKGGAPTKEVVIRRGA
EVVSAETLQYLRALLGAAEGGGGGDSAVWTALRTVCEAELSQVRPDAQGA
AGDAGRTVRERLALAFRREKASVLDEAIRNLEKLEERAS*
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mRNA from alignment at Ecto-sp13_S_contig6983:3..2524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6983.17993.1 ID=mRNA_Ecto-sp13_S_contig6983.17993.1|Name=mRNA_Ecto-sp13_S_contig6983.17993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6983:3..2524+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAACGACGAGTTACTCCAGTTCTACGGCTTCGTGGAGGCAGATTGTCC
GGCGGACACCTACGTGTTGGTGAGGTTGCAGCCGCGCCTGTGTGTGTGTG
TGTGCGTGTGCTGTGTGTAGTTTGTGCTCGTTTTTCGGGGGCTGGGCTTG
GGCGGCGTTGATGGAATTTTGGTAGGTGGGCGGGCACCCATTTGTGCCTG
CGAGAAACTTAGCGAAATTTCCCCCCTTCTTTCTCTTGTGTTCTCTAACC
CCGAAGGACGACGTCGCGAAAAGCCTAGGCGTGCCTGGTGCTAAGGGTGG
CGCACCCACGAAAGAAGTCGTCATCCGAAGAGGTGAGCATTTTCTTTCTC
TACCGGCGTGGCAAGCATCAACGCGTACCGGTGGTGATCAGCGTGTGAGC
TTCAAAAAGAAGCGCCTCGCCAGGGCGTAGGGCCGGGGAGGCAGGCGGCG
GGGTTGATGTGCGTACCTTGTACCGCGAAATGTCACGACGCGCCATCTCA
TTGCGCACCTTGTGCGACAACGTGCGAGGTTTTGGCAACGCCCTACCTTG
AGAATCATTTTCAACAACAACAACCCACGCGGGCACGTTTGAGCTTCAAA
AACGCTTACAATCACTCAGGGGTAGCACCTTGCACGGTATTCGGGGACGC
ACCCGGAGCCAAACACCACCGATCGGGAGGGTTGTACGGTGTACGCTTGC
GAATGAGCGGGGTAGGTACGGCTAAGGTTCGGCGGCGAGTGGCCGAACGA
ACGACCGTGCCTTCCTCTCTCTCTGGCGGCCCGCTCCGAGCTCCGCCCTT
TCGACGCATTAGAGGCAACGCTTGCCAGGAAAGCGAGGTGCAATTGTAAT
TGTTTTTGGTGTTGCGGGAGGTTTGTTCTCTGAGCGAGCGGGATCGATCT
CCCTTTTTCTGTTCGGCCGAAGCTCAGCCTCTCTCCCCCGCTGGCTGTTA
CATACAAGGCATGCGTGCCTCCAAGCATCCGTGTATCTGGATATATCCCA
TGACGAAGATGTCAATGTTGACCGTGCCTCCCCCCCCCCCCCCTCCCGCC
TTCCCCGCACACAAGTACTTCTTCTGCTGCATTTCTCGTGGTACGTTTTC
CGCCGCCGGTACCAACGGTTTCTCCGCCCCGCTGCGCGACAACGCATGGT
TGATGTTGACAGGAGCCGAGGTTGTGAGTGCGGAGACGCTTCAATACCTG
CGCGCTTTGCTTGGCGCGGCGGAGGGGGGGGGAGGAGGGGACAGCGCCGT
GTGGACGGTAAGGCTTCTACCAAACGACTGGTACCATAATTGTTTCGTCG
CTCAGAAAACCATGCTCTAGATGGTTCCCAACCATCGTTCTTCTACCTCG
TACCGCTGAGTAAGCACCATTACCTGGAAAAAGTCTTAAGCAACATGTGT
GCGCATCCAGTCACTTTTCGCGGGAAAACACGGTAGATGATTACCCGCAT
CCAATCACTTCGTCCCTCTCTGTCGTTTGTGTGCGATATGATTTTCTTGC
TGTTTCCAGGCGCTTCGCACCGTGTGCGAAGCGGAGCTGTCTCAGGTGCG
GCCCGACGCGCAGGGTGCGGCCGGCGACGCCGGGAGGACCGTGCGCGAGC
GGTTGGCGTTGGCGTTCAGGAGAGAAAAGGCTAGGTGAGTCAAGGCAGCA
AGTCCAGATCTCCCTGGTCGTCGTTTGGCGGGGGGTTTCAACATGCTCTT
TCCCCCTCGAGAATTCTACCTGTGGTTGGGTAGGTTGTGGCGGTTGTGCG
TATGTTTTTTGGTGTTGTTTCTCCAGGTGTACCTTGTCCATGTGCGAGTG
TCATCAAAGCTTGTACTCGAGGAAAAAAAAATGGAAGAAGTATTTTAGCA
GCCAAGAGACAGAGAGAGATACAGACAGACAGACAGACAGACAGACAGAC
AGACAGACAGATAGACAGAGAGAGAGAGAGAGAGAGAGAGAGACGTGGCC
ATCCGCAAGTAGCCGAAACGGTTTATGGCAAGCTCCAAACGTTCCTGAGT
AGTGAGGGAGGCAGACCCTTGCACCCCTTGGTGAGATACACAAATGAGAT
AGTCACTAACAATGACGTGTCACACAGAAAAGCCGGTACACAATCCCAGC
CCGGCCTCTCAATGCGTTCTTCATCCTGAGCGCCAAGAATTAATTCGCAA
CTGTCTCGTCAACTTATTTCATACAAGTACATGGTAGCTTCATTGTGATG
CCCTCAGTTGTTGAGGTGTGCCACCAGCACCGTGCATGTAGCTCGCCGAA
CACAAACCTAATGGCGCTTGGTTCGTGCATTGTGCATTGACGATGACGTC
GACGGCGAAGCCACGTGTACTTGTCCCGTGCTTTTGTGCGAAAGTTACGG
TACGTCTTGCTCTCTGGGCCATATGGATGGTACTGCAACCCCCCCCCCCG
TCCCTCCGTCACCATGTCCCCGCACCGTCCATCCATTTGGTTTGTCTTGA
TGTGGTCGTCTCCGCAGCGTGTTGGACGAGGCCATCCGAAACTTGGAGAA
GCTCGAAGAGAGGGCGTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6983:3..2524+

>mRNA_Ecto-sp13_S_contig6983.17993.1 ID=mRNA_Ecto-sp13_S_contig6983.17993.1|Name=mRNA_Ecto-sp13_S_contig6983.17993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6983:3..2524+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAACGACGAGTTACTCCAGTTCTACGGCTTCGTGGAGGCAGATTGTCC
GGCGGACACCTACGTGTTGGACGACGTCGCGAAAAGCCTAGGCGTGCCTG
GTGCTAAGGGTGGCGCACCCACGAAAGAAGTCGTCATCCGAAGAGGAGCC
GAGGTTGTGAGTGCGGAGACGCTTCAATACCTGCGCGCTTTGCTTGGCGC
GGCGGAGGGGGGGGGAGGAGGGGACAGCGCCGTGTGGACGGCGCTTCGCA
CCGTGTGCGAAGCGGAGCTGTCTCAGGTGCGGCCCGACGCGCAGGGTGCG
GCCGGCGACGCCGGGAGGACCGTGCGCGAGCGGTTGGCGTTGGCGTTCAG
GAGAGAAAAGGCTAGCGTGTTGGACGAGGCCATCCGAAACTTGGAGAAGC
TCGAAGAGAGGGCGTCGTGA
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