mRNA_Ecto-sp13_S_contig6982.17992.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6982.17992.1
Unique NamemRNA_Ecto-sp13_S_contig6982.17992.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6982.17992.1 vs. uniprot
Match: D7FI34_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI34_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 9.710e-29
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 MTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQ 165
            MTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTV+NFDGLTPQ
Sbjct:   99 MTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVSNFDGLTPQ 153
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BLAST of mRNA_Ecto-sp13_S_contig6982.17992.1 vs. uniprot
Match: A0A6H5JGS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS5_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 9.950e-28
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 MTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQ 165
            MTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQ
Sbjct:  472 MTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQ 526
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BLAST of mRNA_Ecto-sp13_S_contig6982.17992.1 vs. uniprot
Match: A0A1S3IJM5_LINUN (protein fem-1 homolog A n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IJM5_LINUN)

HSP 1 Score: 48.9 bits (115), Expect = 3.240e-5
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 MTRLLVEGGANLEAVDVNGNGVVHAAVCDSPA---VLAILIDHGADVTVANFDGLTPQ 165
            +  LL+E GA+LE VDV GN  +H A  + P    V+ +L++HGA + + N  G TP 
Sbjct:  347 VANLLMEVGASLEDVDVEGNTALHIAAANKPCKLDVMRVLLNHGAHLDMCNASGRTPM 404
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BLAST of mRNA_Ecto-sp13_S_contig6982.17992.1 vs. uniprot
Match: A0A1S3IJB5_LINUN (protein fem-1 homolog C-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IJB5_LINUN)

HSP 1 Score: 48.9 bits (115), Expect = 3.260e-5
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 MTRLLVEGGANLEAVDVNGNGVVHAAVCDSPA---VLAILIDHGADVTVANFDGLTPQ 165
            +  LL+E GA+LE VDV GN  +H A  + P    V+ +L++HGA + + N  G TP 
Sbjct:  523 VANLLMEVGASLEDVDVEGNTALHIAAANKPCKLDVMRVLLNHGAHLDMCNASGRTPM 580
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BLAST of mRNA_Ecto-sp13_S_contig6982.17992.1 vs. uniprot
Match: F0SF75_RUBBR (DUF4253 domain-containing protein n=1 Tax=Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / IAM 15109 / NBRC 103401 / IFAM 1448) TaxID=756272 RepID=F0SF75_RUBBR)

HSP 1 Score: 47.8 bits (112), Expect = 8.380e-5
Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    7 RLLVEGGANLEAVDVNGNGVVH-AAVCDSPAVLAILIDHGADVTVANFDGLTP 162
            R L++ GAN+EAVDV G G++H AA+ D PA L + ++   D+     +G+TP
Sbjct:  419 RTLIQAGANVEAVDVLGFGLLHLAAMSDKPAALEVALETRVDLHAEAMEGMTP 471
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6982.17992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FI34_ECTSI9.710e-2998.18Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JGS5_9PHAE9.950e-28100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1S3IJM5_LINUN3.240e-541.38protein fem-1 homolog A n=1 Tax=Lingula unguis Tax... [more]
A0A1S3IJB5_LINUN3.260e-541.38protein fem-1 homolog C-like n=1 Tax=Lingula ungui... [more]
F0SF75_RUBBR8.380e-543.40DUF4253 domain-containing protein n=1 Tax=Rubinisp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6982contigEcto-sp13_S_contig6982:7189..7353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score110.9
Seed ortholog evalue1.9e-22
Seed eggNOG ortholog2880.D7FI34
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Cds size165
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463957.1543102-CDS-Ecto-sp13_S_contig6982:7188..73531681463957.1543102-CDS-Ecto-sp13_S_contig6982:7188..7353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6982 7189..7353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6982.17992.1prot_Ecto-sp13_S_contig6982.17992.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6982 7189..7353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6982.17992.1

>prot_Ecto-sp13_S_contig6982.17992.1 ID=prot_Ecto-sp13_S_contig6982.17992.1|Name=mRNA_Ecto-sp13_S_contig6982.17992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFD
GLTPQ
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mRNA from alignment at Ecto-sp13_S_contig6982:7189..7353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6982.17992.1 ID=mRNA_Ecto-sp13_S_contig6982.17992.1|Name=mRNA_Ecto-sp13_S_contig6982.17992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6982:7189..7353+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCGCCTGCTAGTGGAGGGGGGAGCGAACCTGGAGGCGGTGGACGT
GAACGGCAACGGGGTGGTCCACGCTGCGGTCTGCGACTCCCCCGCTGTCC
TGGCCATCCTCATCGACCACGGGGCAGATGTGACCGTGGCTAACTTCGAC
GGACTCACGCCACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6982:7189..7353+

>mRNA_Ecto-sp13_S_contig6982.17992.1 ID=mRNA_Ecto-sp13_S_contig6982.17992.1|Name=mRNA_Ecto-sp13_S_contig6982.17992.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6982:7189..7353+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCGCCTGCTAGTGGAGGGGGGAGCGAACCTGGAGGCGGTGGACGT
GAACGGCAACGGGGTGGTCCACGCTGCGGTCTGCGACTCCCCCGCTGTCC
TGGCCATCCTCATCGACCACGGGGCAGATGTGACCGTGGCTAACTTCGAC
GGACTCACGCCACAG
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