prot_Ecto-sp13_S_contig6975.17984.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig6975.17984.1
Unique Name	prot_Ecto-sp13_S_contig6975.17984.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	309

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6975.17984.1 vs. uniprot
Match: D8LGV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGV8_ECTSI)

HSP 1 Score: 442 bits (1138), Expect = 7.890e-150
Identity = 262/308 (85.06%), Postives = 269/308 (87.34%), Query Frame = 0

Query:    1 KAARSDQLEELENEHTKLFGDSLPLSTMPDSFNRAIRRALPALLPPAMAVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADRWRSDDGHDVGSALEVGFGGGGXXXXDGVGRDGKRRERGLETPVSAFQMFLGGSGGSGDVHAXXXXXXXXXXXXXXXPVGDSPGAAAPVAPPLTVQQVSTERQGFFSKPRQQHPQLKNTGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKEVESMRNELERASDDSRRXXXXXXXXXXXNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGEGNPSTQLSPA 308
            KAARSDQLEELENEHTKLFGDSLPLST+PDSFNRAIRRALP++LPPAMAVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADR RSDDGHDVGSALEVGFGGGG      VG +GKRRERG ETP             SG V AXXXX           P+GDS G  AP APPLTVQQVSTERQGFFSKPRQQHPQLK+TGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKEVESMRNELERASDDSRRXXXXXXXXXXXNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLG+GNPSTQLSPA
Sbjct:  307 KAARSDQLEELENEHTKLFGDSLPLSTLPDSFNRAIRRALPSVLPPAMAVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADRRRSDDGHDVGSALEVGFGGGGGVFGGSVGGEGKRRERGPETPXXXXXXXXXXXXXSGGVDAXXXXHGGDVDTRAGGPMGDSSGGVAPFAPPLTVQQVSTERQGFFSKPRQQHPQLKDTGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKEVESMRNELERASDDSRRXXXXXXXXXXXNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGQGNPSTQLSPA 614

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BLAST of mRNA_Ecto-sp13_S_contig6975.17984.1 vs. uniprot
Match: A0A6H5L0M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M1_9PHAE)

HSP 1 Score: 425 bits (1092), Expect = 2.800e-142
Identity = 266/358 (74.30%), Postives = 270/358 (75.42%), Query Frame = 0

Query:    1 KAARSDQLEELENEHTKLFGDSLPLSTMPDSFNRAIRRALPALLPPAMAVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADRWRSDDGHDVGSALEV---------------------------GFGGGGXXXXDGVGRDGKRRERGLETPVSAFQMFLGGSGGSGDVHAXXXXXXXXXXXXXXXPVGDSPGAAAPVAPPLTVQQVSTERQGFFSKPRQQHPQLKNTGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKE-----------------------VESMRNELERASDDSRRXXXXXXXXXXXNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGEGNPSTQLSPA 308
            KAAR DQLEELENEHTKLFGDSLPLSTMPDSFNRAIRRALPALLPPA+AVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADR RSDDGHDVGSALEV                           GFGGG XXXX      GKRRERG ETP+SAFQMFLGGSGGSG V A XXXXXXX       PVGDSPGA AP APP TV   STERQGFFSKPRQQ PQLK+TGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKE                       VESMR+ELERASDDSRR           NRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGEGNPSTQLSPA
Sbjct:  306 KAARPDQLEELENEHTKLFGDSLPLSTMPDSFNRAIRRALPALLPPALAVFLTVSMPAVILLLKGVGTTLVAVAKGYGKADRRRSDDGHDVGSALEVANQIVGLQLAHVCGWYPMDLGQEVAQVGFGGGXXXXXXXXXXXGKRRERGPETPLSAFQMFLGGSGGSGGVDAGXXXXXXXVDTKAGGPVGDSPGAVAPFAPPSTV---STERQGFFSKPRQQPPQLKDTGGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKEAECTRSWPFTKGGREKGKRDPPQVESMRSELERASDDSRRLTDKLCRLEEDNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGEGNPSTQLSPA 660

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6975.17984.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6975.17984.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LGV8_ECTSI	7.890e-150	85.06	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L0M1_9PHAE	2.800e-142	74.30	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 220..254
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..46
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 75..308
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 47..74
None	No IPR available	TMHMM	TMhelix		coord: 40..62

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6975	contig	Ecto-sp13_S_contig6975:3..4272 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6975.17984.1	mRNA_Ecto-sp13_S_contig6975.17984.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig6975 3..4272 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig6975.17984.1 ID=prot_Ecto-sp13_S_contig6975.17984.1|Name=mRNA_Ecto-sp13_S_contig6975.17984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
KAARSDQLEELENEHTKLFGDSLPLSTMPDSFNRAIRRALPALLPPAMAV
FLTVSMPAVILLLKGVGTTLVAVAKGYGKADRWRSDDGHDVGSALEVGFG
GGGVGVGDGVGRDGKRRERGLETPVSAFQMFLGGSGGSGDVHAGGSGHGG
DVDTRAGGPVGDSPGAAAPVAPPLTVQQVSTERQGFFSKPRQQHPQLKNT
GGGFAVGDDAMAAMAMAAMTQELTVMKHSLQKEVESMRNELERASDDSRR
LTDKLCRLEEDNRRLEAVVSRLGGQDARRLKAQLFSLLASPSMGQLGEGN
PSTQLSPA*