mRNA_Ecto-sp13_S_contig6958.17970.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6958.17970.1
Unique NamemRNA_Ecto-sp13_S_contig6958.17970.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6958.17970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6958contigEcto-sp13_S_contig6958:6690..7784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size243
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.8441758-CDS-Ecto-sp13_S_contig6958:6689..68501681463955.8441758-CDS-Ecto-sp13_S_contig6958:6689..6850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6958 6690..6850 +
1681463955.8560767-CDS-Ecto-sp13_S_contig6958:7704..77471681463955.8560767-CDS-Ecto-sp13_S_contig6958:7704..7747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6958 7705..7747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463955.870504-UTR-Ecto-sp13_S_contig6958:7747..77841681463955.870504-UTR-Ecto-sp13_S_contig6958:7747..7784Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6958 7748..7784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6958.17970.1prot_Ecto-sp13_S_contig6958.17970.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6958 6690..7747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6958.17970.1

>prot_Ecto-sp13_S_contig6958.17970.1 ID=prot_Ecto-sp13_S_contig6958.17970.1|Name=mRNA_Ecto-sp13_S_contig6958.17970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
DRIVCRAFCVLPSSSRDEDLRVIWFWTARKGDWCFAVHDVHSAVFQKIFQ
MWQSRPSRLVRFVVASL*
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mRNA from alignment at Ecto-sp13_S_contig6958:6690..7784+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6958.17970.1 ID=mRNA_Ecto-sp13_S_contig6958.17970.1|Name=mRNA_Ecto-sp13_S_contig6958.17970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1095bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6958:6690..7784+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGAATTGTGTGCCGTGCTTTTTGTGTTCTTCCCAGTTCTTCGCGTGA
TGAAGACCTACGCGTGATTTGGTTTTGGACAGCCCGAAAGGGCGATTGGT
GTTTTGCGGTGCATGATGTACATAGTGCTGTTTTTCAGAAGATTTTTCAA
ATGTGGCAATCGCGTCCTAAGGCGCCTCCCAAGCCCGTCAATATCCGATG
TTGTGTTCTTGTTGGATACGTGAGCAATGAGCGGACTTCGTCGTCTGCAT
TCTCATTCCATAGACATTGGAGAGTCACGCACATATGGTTCCCTCCTCCC
CCCTCTTCTGTGCTTGTCCTTGCTCCCCCCCCCCCCCGCCGTGCAGCTCG
CCCCCCTATCCCACCTCCTCCCCCCCCGCCGCCGCCGCCGCCATCGTGAG
GTTGGTCGAGAGCGCCTAGCCGAAAGTTCTGGTCGGCAAAACAAGTATTG
GGGGTGTGTGATGACGACGGATTTTGTGTTCGGTAGCCAGTCATTGGTCG
GCTTTTCAGGCCTTTTTTGTCCGAACTTCAAAGGCTTACGCGCCGGGAGC
CGGGGGTGGGTAGGTGGGTGGGTAGGCAAGGGGAGAACTCTTGACGAATA
TGGAGCTGTCGTGGTGCGTTGTTTGGCACGTGTAGGGTGTTCACACATGA
TTCTTTCGCTCACCTTGGCAGGCATCCATTGCCGCAGGAGGTGGATGAGC
AGTAGGGTGGCTTGGCCGTCGCAGGTGGCGTACACGTGTGGATCGGTTGA
TATTTTGGTTAGCTCTTTCTTGTGTCTGTTAACCCTTGTCGCCGAAGAAG
TAGGTGTAAGTGGCAATCAAAGAGGAGTTTCGCGGACGTCCTTGAAATCT
TGGAGTGCTTTGCTGCCGAGCGCACTTTGAGCGGTGCATCCCCGGCAGGT
TAATTCTATTGTTTTTAGGCCGGGCGTAAGATATGCTGATTATTGCTTGG
GACGAGCGAGAAAGCAAGATCGTGGCCATTGCTTTCATTCTGTCAGTTTT
TGGTTGCCGGAGGAGGCGACCTTCACGTCTTGTCAGGTTCGTGGTTGCTT
CGCTTTGACCATCGAAACAATGTTTAAGGGACGGTTAATGCTTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6958:6690..7784+

>mRNA_Ecto-sp13_S_contig6958.17970.1 ID=mRNA_Ecto-sp13_S_contig6958.17970.1|Name=mRNA_Ecto-sp13_S_contig6958.17970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6958:6690..7784+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGAATTGTGTGCCGTGCTTTTTGTGTTCTTCCCAGTTCTTCGCGTGA
TGAAGACCTACGCGTGATTTGGTTTTGGACAGCCCGAAAGGGCGATTGGT
GTTTTGCGGTGCATGATGTACATAGTGCTGTTTTTCAGAAGATTTTTCAA
ATGTGGCAATCGCGACCTTCACGTCTTGTCAGGTTCGTGGTTGCTTCGCT
TTGA
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