mRNA_Ecto-sp13_S_contig6950.17951.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6950.17951.1
Unique NamemRNA_Ecto-sp13_S_contig6950.17951.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.880e-31
Identity = 104/264 (39.39%), Postives = 129/264 (48.86%), Query Frame = 1
Query:  190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPV-PQEEHRLSKCTRARGVGSPGRSSWGEEARG-AWSFYDDDALCVRVDESSGVSGRPPLSHLAVSPSDSRQG*MSERMPN-RGSTPGRRSATPET---IWCWWW----------------------------------QGNNMGGLSTVPAGTTA--LRFEP*QPADRAAFEGSVGELQRGLLVFWAAQSSGRLALRG 855
            + RTLLA +CASP+LA S+LLEFN+ WNLRMM++NRGLPAA GG  N+YL   IQRDTAD +SS PV P+    +         G   RS WG E  G  W   D+DA C   D  S V+GR P+S L +S     +  M E MP  R  T GR           W   W                                  Q N+   L+ +P   TA  LR +  QP D AAFE SVG++Q   +    A ++GR ALRG
Sbjct:  665 YLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLE-RSLWGGERDGEVWGIADNDAFCTD-DGDSDVNGRTPMSDLTLSAKMYAKM-MGESMPETRVHTWGRMQLYQRVNFDAWAGKWNADCDQVQQGLAPFAKIYRKTAKQLEEYYGVLQRQANDT--LTLLPRRNTANALRADLQQPVDGAAFENSVGQIQPVPVALRTASAAGRSALRG 923          
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 2.230e-12
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDT 363
            + RTLLA +CASPALA S+LLEFN  WNL+MMV+NRGLPA  G   N++L  +IQR T
Sbjct:  709 YLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRAT 766          
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 3.450e-12
Identity = 51/125 (40.80%), Postives = 63/125 (50.40%), Query Frame = 1
Query:  205 LACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPV-PQEEHRLSKCTRARGVGSPGRSSWGEEARGAWSFYDDDALCVRVDESSGVSGRPPLSHLAVS 576
            LA + ASPALA S+LLEFN  WNL+MMV+NR                       D + S PV PQ +  +         G  GRS WG E   AW+    +A C  VD+   V+GR PLSHLA+S
Sbjct:  956 LASYSASPALAQSVLLEFNFRWNLKMMVKNR-----------------------DWDPSFPVFPQWQAAVDSVDTGERSGL-GRSLWGGENAKAWNGAGHEASCAEVDDVGDVNGRTPLSHLALS 1056          
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5KP32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP32_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.010e-11
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  202 LLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPVPQE 399
            LL+ +CASPALAHS+LLEFNH WN++M V+NR LP   GG  +++   +IQR+T   +   PV  E
Sbjct:   84 LLSTYCASPALAHSILLEFNHRWNIKMAVKNRNLPKEIGGCFDQFDIEIIQRETTSWDLDSPVFSE 149          
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.580e-11
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTA 366
            + R LL+ +CASPALAHS+LLEFN  WN+RM V+NRGLP   G   ++Y   +IQRDTA
Sbjct:   72 YLRRLLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQYETEIIQRDTA 130          
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5L7E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E8_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 9.680e-11
Identity = 32/51 (62.75%), Postives = 34/51 (66.67%), Query Frame = 1
Query:  244 MLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPVPQ 396
            MLLEFN  WNLRMMV+NRGLPAA GG  N Y G+LIQR         P PQ
Sbjct:    1 MLLEFNLGWNLRMMVKNRGLPAALGGHYNNYRGKLIQRAMGTGSRVAPSPQ 51          
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.880e-10
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPV 390
            + R LL+ +CASP+LAHS+LLEFN+ WN+RM V+NRGLP   G   +++   +IQR+TA      P+
Sbjct:  345 YVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPL 411          
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.350e-10
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPV 390
            + R LL+ +CASP+LAHS+LLEFN+ WN+RM V+NRGLP   G   +++   +IQR+TA      P+
Sbjct:  342 YLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPL 408          
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5K811_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K811_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.510e-10
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTAD 369
            + +TLLA FCASP + H++L+EFNH WN+   VENRG+ A  GG  ++Y+   IQR TA+
Sbjct:  419 YLKTLLAAFCASPEVCHTVLMEFNHRWNISRAVENRGMAAEIGGFSHQYMIDHIQRATAE 478          
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.340e-8
Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query:  190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTAD 369
            + +TLLA FCASP + H++L+EFNH WN+   VENRG+ A  G   ++Y+   IQR TA+
Sbjct:  748 YLKTLLAYFCASPEVCHTVLMEFNHRWNISRTVENRGMSAEIGRFSHQYMIDHIQRVTAE 807          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JRJ6_9PHAE2.880e-3139.393'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7G3Q9_ECTSI2.230e-1263.793'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K4M0_9PHAE3.450e-1240.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP32_9PHAE1.010e-1151.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U3_9PHAE1.580e-1159.32Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7E8_9PHAE9.680e-1162.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPK9_9PHAE2.880e-1049.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE3.350e-1049.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K811_9PHAE8.510e-1051.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG2_9PHAE2.340e-850.003'-5' exonuclease domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6950contigEcto-sp13_S_contig6950:4905..5763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size859
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463954.8254473-UTR-Ecto-sp13_S_contig6950:4904..51471681463954.8254473-UTR-Ecto-sp13_S_contig6950:4904..5147Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6950 4905..5147 +
1681463954.8472474-UTR-Ecto-sp13_S_contig6950:5504..57631681463954.8472474-UTR-Ecto-sp13_S_contig6950:5504..5763Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6950 5505..5763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463954.8369868-CDS-Ecto-sp13_S_contig6950:5147..55041681463954.8369868-CDS-Ecto-sp13_S_contig6950:5147..5504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6950 5148..5504 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6950.17951.1prot_Ecto-sp13_S_contig6950.17951.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6950 5148..5504 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6950.17951.1

>prot_Ecto-sp13_S_contig6950.17951.1 ID=prot_Ecto-sp13_S_contig6950.17951.1|Name=mRNA_Ecto-sp13_S_contig6950.17951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPVP
QEEHRLSKCTRARGVGSPGRSSWGEEARGAWSFYDDDALCVRVDESSGVS
GRPPLSHLAVSPSDSRQG*
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mRNA from alignment at Ecto-sp13_S_contig6950:4905..5763+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6950.17951.1 ID=mRNA_Ecto-sp13_S_contig6950.17951.1|Name=mRNA_Ecto-sp13_S_contig6950.17951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=859bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6950:4905..5763+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTAGAGCCTCTGTTTTATTTAGTTGATGTTTCTGGGCCCTTCATTTGCT CTTCAGGTTTTCAGATTGCATCCTTGGTAGGGCCTGTGCCCACGGATGGC ATCCCCATCAGTTGCACCACCAGTGAGGATGTTAGAAGGTTCGAAATTCA CGGCTGCCACCCCTGTTGTCGCATCCCAACCGCTGTTCATTCTCGCGGAC CCTGCTGGCCTGCTTCTGTGCATCTCCGGCACTAGCGCACTCGATGTTGC TGGAGTTCAACCACTGGTGGAACCTGAGGATGATGGTTGAGAACCGTGGC TTGCCCGCGGCGCCGGGAGGACGCTGCAACAAGTATCTTGGGAGGCTGAT CCAGCGGGACACGGCGGACAGGGAGTCGAGTTGCCCCGTCCCCCAGGAGG AGCATCGACTAAGTAAGTGCACACGGGCAAGAGGAGTTGGCTCTCCAGGA AGGAGCTCATGGGGGGAAGAGGCCCGGGGGGCATGGAGTTTTTACGATGA TGACGCGTTGTGTGTTCGTGTGGACGAAAGCAGTGGTGTCAGCGGCCGAC CGCCGCTGTCGCACTTGGCGGTTTCTCCGAGCGATTCACGGCAAGGATGA ATGAGCGAAAGAATGCCAAATCGAGGGTCCACACCAGGAAGGAGAAGCGC AACTCCAGAGACGATCTGGTGCTGGTGGTGGCAGGGGAACAACATGGGAG GACTATCAACAGTACCAGCCGGAACAACCGCTCTCCGTTTCGAACCTTAA CAGCCCGCAGACAGAGCTGCGTTCGAGGGCTCGGTTGGAGAGCTGCAGCG TGGTCTTCTAGTCTTTTGGGCGGCGCAATCTTCTGGAAGGCTGGCATTGC GGGGGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6950:4905..5763+

>mRNA_Ecto-sp13_S_contig6950.17951.1 ID=mRNA_Ecto-sp13_S_contig6950.17951.1|Name=mRNA_Ecto-sp13_S_contig6950.17951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6950:4905..5763+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGCTGGAGTTCAACCACTGGTGGAACCTGAGGATGATGGTTGAGAA
CCGTGGCTTGCCCGCGGCGCCGGGAGGACGCTGCAACAAGTATCTTGGGA
GGCTGATCCAGCGGGACACGGCGGACAGGGAGTCGAGTTGCCCCGTCCCC
CAGGAGGAGCATCGACTAAGTAAGTGCACACGGGCAAGAGGAGTTGGCTC
TCCAGGAAGGAGCTCATGGGGGGAAGAGGCCCGGGGGGCATGGAGTTTTT
ACGATGATGACGCGTTGTGTGTTCGTGTGGACGAAAGCAGTGGTGTCAGC
GGCCGACCGCCGCTGTCGCACTTGGCGGTTTCTCCGAGCGATTCACGGCA
AGGATGA
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