mRNA_Ecto-sp13_S_contig6950.17951.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE) HSP 1 Score: 133 bits (334), Expect = 2.880e-31 Identity = 104/264 (39.39%), Postives = 129/264 (48.86%), Query Frame = 1
Query: 190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPV-PQEEHRLSKCTRARGVGSPGRSSWGEEARG-AWSFYDDDALCVRVDESSGVSGRPPLSHLAVSPSDSRQG*MSERMPN-RGSTPGRRSATPET---IWCWWW----------------------------------QGNNMGGLSTVPAGTTA--LRFEP*QPADRAAFEGSVGELQRGLLVFWAAQSSGRLALRG 855
+ RTLLA +CASP+LA S+LLEFN+ WNLRMM++NRGLPAA GG N+YL IQRDTAD +SS PV P+ + G RS WG E G W D+DA C D S V+GR P+S L +S + M E MP R T GR W W Q N+ L+ +P TA LR + QP D AAFE SVG++Q + A ++GR ALRG
Sbjct: 665 YLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSSHPVFPEWPAAIDSVDTGERFGLE-RSLWGGERDGEVWGIADNDAFCTD-DGDSDVNGRTPMSDLTLSAKMYAKM-MGESMPETRVHTWGRMQLYQRVNFDAWAGKWNADCDQVQQGLAPFAKIYRKTAKQLEEYYGVLQRQANDT--LTLLPRRNTANALRADLQQPVDGAAFENSVGQIQPVPVALRTASAAGRSALRG 923
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 2.230e-12 Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query: 190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDT 363
+ RTLLA +CASPALA S+LLEFN WNL+MMV+NRGLPA G N++L +IQR T
Sbjct: 709 YLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRAT 766
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE) HSP 1 Score: 77.4 bits (189), Expect = 3.450e-12 Identity = 51/125 (40.80%), Postives = 63/125 (50.40%), Query Frame = 1
Query: 205 LACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPV-PQEEHRLSKCTRARGVGSPGRSSWGEEARGAWSFYDDDALCVRVDESSGVSGRPPLSHLAVS 576
LA + ASPALA S+LLEFN WNL+MMV+NR D + S PV PQ + + G GRS WG E AW+ +A C VD+ V+GR PLSHLA+S
Sbjct: 956 LASYSASPALAQSVLLEFNFRWNLKMMVKNR-----------------------DWDPSFPVFPQWQAAVDSVDTGERSGL-GRSLWGGENAKAWNGAGHEASCAEVDDVGDVNGRTPLSHLALS 1056
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5KP32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP32_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 1.010e-11 Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 202 LLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPVPQE 399
LL+ +CASPALAHS+LLEFNH WN++M V+NR LP GG +++ +IQR+T + PV E
Sbjct: 84 LLSTYCASPALAHSILLEFNHRWNIKMAVKNRNLPKEIGGCFDQFDIEIIQRETTSWDLDSPVFSE 149
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.580e-11 Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTA 366
+ R LL+ +CASPALAHS+LLEFN WN+RM V+NRGLP G ++Y +IQRDTA
Sbjct: 72 YLRRLLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQYETEIIQRDTA 130
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5L7E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E8_9PHAE) HSP 1 Score: 66.2 bits (160), Expect = 9.680e-11 Identity = 32/51 (62.75%), Postives = 34/51 (66.67%), Query Frame = 1
Query: 244 MLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPVPQ 396
MLLEFN WNLRMMV+NRGLPAA GG N Y G+LIQR P PQ
Sbjct: 1 MLLEFNLGWNLRMMVKNRGLPAALGGHYNNYRGKLIQRAMGTGSRVAPSPQ 51
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 2.880e-10 Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPV 390
+ R LL+ +CASP+LAHS+LLEFN+ WN+RM V+NRGLP G +++ +IQR+TA P+
Sbjct: 345 YVRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPL 411
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 3.350e-10 Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPV 390
+ R LL+ +CASP+LAHS+LLEFN+ WN+RM V+NRGLP G +++ +IQR+TA P+
Sbjct: 342 YLRRLLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETASWYPDSPL 408
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5K811_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K811_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 8.510e-10 Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTAD 369
+ +TLLA FCASP + H++L+EFNH WN+ VENRG+ A GG ++Y+ IQR TA+
Sbjct: 419 YLKTLLAAFCASPEVCHTVLMEFNHRWNISRAVENRGMAAEIGGFSHQYMIDHIQRATAE 478
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 2.340e-8 Identity = 30/60 (50.00%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 190 FSRTLLACFCASPALAHSMLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTAD 369
+ +TLLA FCASP + H++L+EFNH WN+ VENRG+ A G ++Y+ IQR TA+
Sbjct: 748 YLKTLLAYFCASPEVCHTVLMEFNHRWNISRTVENRGMSAEIGRFSHQYMIDHIQRVTAE 807 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6950.17951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6950.17951.1 >prot_Ecto-sp13_S_contig6950.17951.1 ID=prot_Ecto-sp13_S_contig6950.17951.1|Name=mRNA_Ecto-sp13_S_contig6950.17951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp MLLEFNHWWNLRMMVENRGLPAAPGGRCNKYLGRLIQRDTADRESSCPVPback to top mRNA from alignment at Ecto-sp13_S_contig6950:4905..5763+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6950.17951.1 ID=mRNA_Ecto-sp13_S_contig6950.17951.1|Name=mRNA_Ecto-sp13_S_contig6950.17951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=859bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6950:4905..5763+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6950:4905..5763+ >mRNA_Ecto-sp13_S_contig6950.17951.1 ID=mRNA_Ecto-sp13_S_contig6950.17951.1|Name=mRNA_Ecto-sp13_S_contig6950.17951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6950:4905..5763+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |